mRNA_Ecto-sp6_S_contig8.16960.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 286 bits (731), Expect = 3.090e-97 Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1
Query: 55 SALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 483
+ALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGF+KTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR
Sbjct: 2 TALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 144
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE) HSP 1 Score: 222 bits (565), Expect = 4.460e-64 Identity = 114/143 (79.72%), Postives = 118/143 (82.52%), Query Frame = 1
Query: 58 ALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
ALVDARKRT V KWANAYDDRTSEYGGCDPDGCKAS TRD+SW+DESRWSCSEKLEDAQC ITY FEEPQDIVRIKI + FKK ITSSGTSS YETWDINTDETKWLSMEALNLDDDEWISITEVR+
Sbjct: 607 ALVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 1.580e-19 Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 55 SALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQD-ESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
+A+V+A TV A+ YD S GCDP GC A LTRD ESRWSC L DA +C+ITY + + I YKGDER RTL + + T TSSGT++ YET +++T +W+S+ + L+D EW+SI EV +
Sbjct: 23 AAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDT-MAQWISVVGV-LEDSEWLSIMEVEI 167
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 6.320e-18 Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 55 SALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRD-QSWQDESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
+A V+A V A YD R S GCDP GC A LTRD + ESRW+C L DA +C+ITY + + I YKGDER RTL++ + T TSSGT++ +ET +++T +W+S+ + L D EW+SI EV++
Sbjct: 5 AASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDT-MGRWISIVGV-LADSEWLSIMEVKI 149
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 8.360e-16 Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 1
Query: 37 AVLGTSSALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDA-------QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDIN----TDETKWLSMEALNLDDDEWISITEVRM 486
A T V+A + TTV NA+D RT + GC PDGC TRD D SRWSCS L +A +C++ ++ E Q + + + F KGD R RTL + + + +TS GT+S ET++++ L ME+ L DE++SI EV +
Sbjct: 239 AAAPTXXXAVEAGEVTTVTVTTNAFDARTDD-DGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEI 398
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 7.810e-15 Identity = 63/163 (38.65%), Postives = 87/163 (53.37%), Query Frame = 1
Query: 13 GLFALAFAAVLGTSSALVDARKRTTVNKWANAYDDR-TSEYGGCDPDGCKASLTRD-QSWQDESRWSCSEKLEDAQ--CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTI-TSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
GL A +A+V+A TV A YD T+ GGC P GC TRD + ESRWSC L DA C+ITY + + I YKGDER RTL++ D T+ TSSGT++ +ET +++T +W+ + + L+D EW+SI EV +
Sbjct: 9 GLLAAGAGPSSSALAAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEI-NIDNLPYTVWTSSGTTTDFETIEVDT-MGRWIDIVGV-LEDSEWLSIMEVEI 168
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 4.010e-11 Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 1
Query: 40 VLGTSSALVDARKRTTVNKWANAYDDRTSEYGG------CDPDGCKASLTRDQ-SWQDESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEV 480
+L + V+ +T V+ A AYD R G +GC + TRD S + ESRWSC+ K+ C+I Y F EPQDI IK+ F+ GDERVRTL++ DG S S + + ++ + +E+++L ++EWIS+ EV
Sbjct: 471 LLTVGTDAVEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVY-FDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: UPI0014728A14 (hypothetical protein n=1 Tax=Neobacillus soli TaxID=220688 RepID=UPI0014728A14) HSP 1 Score: 55.8 bits (133), Expect = 1.820e-7 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 262 PQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALN--LDDDEWISITEVRM 486
PQDI +I I F+ G R RTL + + + TITSSG + +ET+D+ TDETK L + + + D W+SITEV +
Sbjct: 1 PQDIEKIAIAFHLGTSRTRTLDVFNNHYYHSTITSSGKTDGFETFDLYTDETKELKLCVFDPKWNTDVWLSITEVEI 77 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig8.16960.1 >prot_Ecto-sp6_S_contig8.16960.1 ID=prot_Ecto-sp6_S_contig8.16960.1|Name=mRNA_Ecto-sp6_S_contig8.16960.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=164bp MHSFGLFALAFAAVLGTSSALVDARKRTTVNKWANAYDDRTSEYGGCDPDback to top mRNA from alignment at Ecto-sp6_S_contig8:18338..19292- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig8.16960.1 ID=mRNA_Ecto-sp6_S_contig8.16960.1|Name=mRNA_Ecto-sp6_S_contig8.16960.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=955bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:18338..19292- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:18338..19292- >mRNA_Ecto-sp6_S_contig8.16960.1 ID=mRNA_Ecto-sp6_S_contig8.16960.1|Name=mRNA_Ecto-sp6_S_contig8.16960.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:18338..19292- (Ectocarpus species6 EcLAC_371)back to top |