mRNA_Ecto-sp6_S_contig8.16958.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.16958.1
Unique NamemRNA_Ecto-sp6_S_contig8.16958.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: D7FXZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ0_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 4.700e-164
Identity = 235/241 (97.51%), Postives = 240/241 (99.59%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVEHDALRVDGEKWRETVATERGGDEGRGTEVAVGTPGDGRAFV 723
            MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQ+RLEEVIETFRRNALAKNLEEEIGK+HLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDG+GRFSEVSCG+QQQRQQRTTLRPGDYAVVNVR+TSGITLRGSAIARTTL EHDALRVDGEKWRETVATERGGDEGRGTEVAVGTPGDGRAFV
Sbjct:   14 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQRRLEEVIETFRRNALAKNLEEEIGKDHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGMGRFSEVSCGKQQQRQQRTTLRPGDYAVVNVRETSGITLRGSAIARTTLAEHDALRVDGEKWRETVATERGGDEGRGTEVAVGTPGDGRAFV 254          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A6H5KEL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL0_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 8.150e-130
Identity = 219/291 (75.26%), Postives = 224/291 (76.98%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLE------------EVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQR--------------------------------------TTLRPGDYAVVNVRQTSGITLRGSAIARTTLVEHDALRVDGEKWRETVATERGGDEGRGTEVAVGTPGDGRAFV 723
            MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLME VRYDQAFMYAYSLREKTRAARRL+DDVPPTVKQ+RLE            EVIETFRRNALAKNLEEEIGK+HLVLVEGRSRRW EEAPELTGRTDGNKRVVFPDRGV+ GLGRFS VSCGQQ                                            TTLRPGDYAVVNVR+TSGITLRGSAIARTTLVEHDALRVDGEK  E V TERGGDEGRGTEVA GT GD RAFV
Sbjct:  475 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMEIVRYDQAFMYAYSLREKTRAARRLEDDVPPTVKQRRLEVTSPHLFPLYMGEVIETFRRNALAKNLEEEIGKDHLVLVEGRSRRWREEAPELTGRTDGNKRVVFPDRGVVGGLGRFSGVSCGQQXXXXXXRVSGRARADYLMPAPCKCXXXXXXXXXXXXXXXXXXXXTTLRPGDYAVVNVRETSGITLRGSAIARTTLVEHDALRVDGEKSLEKVTTERGGDEGRGTEVAAGTSGDRRAFV 765          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A7S4FW59_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FW59_9EUGL)

HSP 1 Score: 216 bits (549), Expect = 2.780e-63
Identity = 117/202 (57.92%), Postives = 145/202 (71.78%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGL-GRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVEH 603
            M RGY+REAYL LVD AR  +PG++ISSDFI+GFCGET+ +HRDT+ LM  V++DQAFM+AYSLREKT AARR++DDVP  VK++RL+ VIETFR     KN  EEIGK  LVLVEG +++ + E P  TGRTD NKRVVF D  + DG  G+ +  +CG +          PGDY VV + Q  G TLRG AIART+L E+
Sbjct:  360 MRRGYTREAYLTLVDKARKIIPGLAISSDFITGFCGETDAEHRDTIDLMRAVQFDQAFMFAYSLREKTHAARRMEDDVPKDVKKERLQHVIETFREEVQRKNDVEEIGKCRLVLVEGPAKKSTPEHPMSTGRTDTNKRVVFEDHVIHDGWHGKVAPTACGGRS-----VQPNPGDYVVVQITQARGHTLRGIAIARTSLAEY 556          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A836CJ12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ12_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.870e-61
Identity = 118/202 (58.42%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFP-DRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVEH 603
            M RGY+REAYL L    R  +PGVS+SSDFISGFCGETEEDH+ TLSL+E VR+DQAFMYAYSLR+KT AARRL DDVP  VKQ+RL EVI TFRR A  +N   E+G+  +VLVEG SRR + E P LTGRTDGNKRVV   D  V   L   +  + G           + GDY +V V + +G TL G  +ARTTL EH
Sbjct:  323 MRRGYTREAYLELAQRVRRLIPGVSMSSDFISGFCGETEEDHQQTLSLIEEVRFDQAFMYAYSLRDKTHAARRLSDDVPADVKQRRLAEVIATFRRGAQERNRSVELGRCRVVLVEGASRRSTTERPLLTGRTDGNKRVVMNGDTAVPASLDAAARAAAGAPLPPSPLVLPQAGDYVLVRVEEATGHTLTGRVLARTTLREH 524          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: L8GNU8_ACACA (CDK5 regulatory subunit associated protein 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNU8_ACACA)

HSP 1 Score: 196 bits (498), Expect = 9.430e-56
Identity = 112/198 (56.57%), Postives = 136/198 (68.69%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTL 594
            M R Y+REAYL L+   R  +P V +SSDFISGFCGETEE H+DTLSL+  VR+DQAFM+AYS+REKT A R L+D+VP  VKQQRL+EVI+TF    LA+   EEIG+ HLVLVEG SRR S+   +L GRTD NK+VVFP+  V    G  +            +  +RPGDY VV V  T+GITL G  +ARTTL
Sbjct:  366 MRRFYTREAYLELIQRMREVIPNVGLSSDFISGFCGETEEHHQDTLSLLREVRFDQAFMFAYSMREKTNAHRTLQDNVPEEVKQQRLKEVIQTFFAT-LAEKSREEIGRRHLVLVEGTSRRSSD---DLMGRTDNNKKVVFPNMKVDAEYGGATTGGAAA------KVEVRPGDYVVVEVESTTGITLLGRPLARTTL 553          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: H3G704_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3G704_PHYRM)

HSP 1 Score: 189 bits (480), Expect = 1.290e-53
Identity = 106/200 (53.00%), Postives = 135/200 (67.50%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVE 600
            M RGYSREAYLALVD+ R  +PGV+ISSDFI+GFCGETEE+H DT+SLM  V YDQAFM+AYS+R +T AA R+ DDVP   K +RL EVI+TF      KN  E+  + H+VLV+G SRR ++E P LTG TD +KR VFP++ +   L  F++      Q  +      PGDY +V VR+    TL  + +ARTTL E
Sbjct:  311 MRRGYSREAYLALVDNMRTRIPGVAISSDFIAGFCGETEEEHADTISLMRQVCYDQAFMFAYSVRARTHAAHRMDDDVPQEDKLRRLREVIDTFSEVVTCKNHVEDSDRLHVVLVQGPSRRSTDEDPRLTGLTDTSKRCVFPNQEMPGSLRAFTK------QAGELAIRAAPGDYVLVRVREAGRHTLHATPVARTTLQE 504          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A7K4Z2R4_BUCAB (CK5P1 protein (Fragment) n=1 Tax=Bucorvus abyssinicus TaxID=153643 RepID=A0A7K4Z2R4_BUCAB)

HSP 1 Score: 189 bits (479), Expect = 4.700e-53
Identity = 109/205 (53.17%), Postives = 134/205 (65.37%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVEHDALR 615
            M RGY+REAYL LV H R  +PGVS+SSDFI+GFCGETEEDH+ T+SL+  VRY+  F++AYS+R+KTRA  RL+DDVP  VK++RLEE+I  FR  A AK  E  +G+  LVLVEG S+R    A EL GR DGN +V+FPD  + D        SCG           RPGDY +V V   S  TL+G  +ARTTL    A R
Sbjct:  367 MRRGYTREAYLELVRHVREAIPGVSLSSDFIAGFCGETEEDHQQTVSLLRAVRYNMGFLFAYSMRQKTRAYHRLQDDVPADVKKRRLEELIAVFREEA-AKANEAMVGQSQLVLVEGPSKR---SASELCGRNDGNIKVIFPDTELGDA------ASCGA------AVRARPGDYVLVQVTAASSQTLKGVLLARTTLSRATAAR 555          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A7L0WI17_ALELA (CK5P1 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L0WI17_ALELA)

HSP 1 Score: 187 bits (475), Expect = 5.100e-53
Identity = 105/198 (53.03%), Postives = 131/198 (66.16%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTL 594
            M RGY+REAYL L+ H R ++PGVS+SSDFI+GFCGETEEDH+ T+SL+  VRY+  F++AYS+R+KTRA RRL+DDVP  VK++RLEE+I  FR  A   N E  +G+  LVLVEG S+R    A EL GR DGN +V+FPD    D  GR +                RPGDY +V V   S  TLRG  + RTTL
Sbjct:  300 MQRGYTREAYLELIQHVRNSIPGVSLSSDFIAGFCGETEEDHQQTVSLLREVRYNVGFLFAYSMRQKTRAHRRLQDDVPKEVKRRRLEELIAVFREEAARAN-EAMVGQSQLVLVEGPSKR---SASELCGRNDGNIKVIFPDAETEDAAGRGALGRA------------RPGDYVLVKVTSASSQTLRGVLLCRTTL 481          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A091PSI6_LEPDC (CDK5 regulatory subunit-associated protein 1 (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A091PSI6_LEPDC)

HSP 1 Score: 186 bits (472), Expect = 1.330e-52
Identity = 105/198 (53.03%), Postives = 132/198 (66.67%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTL 594
            M RGY+REAYL LV H R ++PGVS+SSDFI+GFCGETEEDH+ ++SL+  VRY+  F++AYS+R+KTRA  RL+DDVP TVK++RLEE+I  FR  A   N E  +G+  LVLVEG S+R    A EL GR DGN +V+FPD  V D  G  + V              RPGDY +V V   S  TL+G  + RTTL
Sbjct:  297 MRRGYTREAYLELVQHVRESIPGVSLSSDFIAGFCGETEEDHQQSVSLLREVRYNVGFLFAYSMRQKTRAHHRLQDDVPATVKKRRLEELIAVFREEAARAN-EAMVGQSQLVLVEGPSKR---SAAELCGRNDGNIKVIFPDAEVGDAAGCRALVRA------------RPGDYVLVKVTAASSQTLKGVLLCRTTL 478          
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Match: A0A674J0R8_TERCA (CDK5 regulatory subunit associated protein 1 n=8 Tax=Durocryptodira TaxID=1579337 RepID=A0A674J0R8_TERCA)

HSP 1 Score: 186 bits (473), Expect = 1.490e-52
Identity = 106/205 (51.71%), Postives = 134/205 (65.37%), Query Frame = 1
Query:    1 MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLMETVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALAKNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGLGRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVEHDALR 615
            M RGY+REAYL L+ H R ++PGVS+SSDFI+GFCGETE+DH+ T+SL+  VRY+  F++AYS+R+KTRA  RL+DDVP  VK++RLEE+I  FR  A   N    +G+  LVLVEG S+R    A EL GR DGN RVVFPD  + DG G  + V              +PGDY +V V   S  TL+G  + RTTL E  A R
Sbjct:  320 MRRGYTREAYLELIQHVRDSIPGVSLSSDFIAGFCGETEDDHQQTMSLLRQVRYNVGFLFAYSMRQKTRAYHRLQDDVPAEVKRRRLEELISVFREEATRAN-GAMVGRSQLVLVEGPSKR---SAAELCGRNDGNIRVVFPDTEMEDGSGSGAVVRA------------QPGDYVLVKVTSASSQTLKGVLLRRTTLRESAAHR 508          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.16958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXZ0_ECTSI4.700e-16497.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEL0_9PHAE8.150e-13075.26Reverse transcriptase domain-containing protein n=... [more]
A0A7S4FW59_9EUGL2.780e-6357.92Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A836CJ12_9STRA4.870e-6158.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8GNU8_ACACA9.430e-5656.57CDK5 regulatory subunit associated protein 1, puta... [more]
H3G704_PHYRM1.290e-5353.00Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A7K4Z2R4_BUCAB4.700e-5353.17CK5P1 protein (Fragment) n=1 Tax=Bucorvus abyssini... [more]
A0A7L0WI17_ALELA5.100e-5353.03CK5P1 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]
A0A091PSI6_LEPDC1.330e-5253.03CDK5 regulatory subunit-associated protein 1 (Frag... [more]
A0A674J0R8_TERCA1.490e-5251.71CDK5 regulatory subunit associated protein 1 n=8 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:7758..11026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score466.5
Seed ortholog evalue7.8e-129
Seed eggNOG ortholog2880.D7FXZ0
Preferred nameCDK5RAP1
Model size726
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000373,GO:0000375,GO:0000377,GO:0000959,GO:0000963,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006450,GO:0006469,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008033,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0009451,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016070,GO:0016740,GO:0016782,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0030154,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0033673,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045595,GO:0045664,GO:0045727,GO:0045736,GO:0045786,GO:0045859,GO:0045903,GO:0045936,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050497,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051338,GO:0051348,GO:0051726,GO:0051960,GO:0060255,GO:0060284,GO:0060322,GO:0065007,GO:0065008,GO:0065009,GO:0070129,GO:0070131,GO:0070525,GO:0070900,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0090304,GO:0090646,GO:0098772,GO:0140053,GO:1900864,GO:1901360,GO:1904029,GO:1904030,GO:2000026,GO:2000112
Exons5
EggNOG free text desc.N6-isopentenyladenosine methylthiotransferase activity
EggNOG OGsCOG0621@1,KOG2492@2759
Ec32 ortholog descriptionRadical SAM, alpha/beta horseshoe
Ec32 orthologEc-19_002100.1
Cds size726
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350401.7942314-CDS-Ecto-sp6_S_contig8:7757..79821682350401.7942314-CDS-Ecto-sp6_S_contig8:7757..7982Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 7758..7982 -
1682350401.8060496-CDS-Ecto-sp6_S_contig8:9254..93931682350401.8060496-CDS-Ecto-sp6_S_contig8:9254..9393Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 9255..9393 -
1682350401.8159943-CDS-Ecto-sp6_S_contig8:9706..98041682350401.8159943-CDS-Ecto-sp6_S_contig8:9706..9804Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 9707..9804 -
1682350401.8257158-CDS-Ecto-sp6_S_contig8:10193..102891682350401.8257158-CDS-Ecto-sp6_S_contig8:10193..10289Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 10194..10289 -
1682350401.835619-CDS-Ecto-sp6_S_contig8:10858..110261682350401.835619-CDS-Ecto-sp6_S_contig8:10858..11026Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 10859..11026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.16958.1prot_Ecto-sp6_S_contig8.16958.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 7758..11026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.16958.1

>prot_Ecto-sp6_S_contig8.16958.1 ID=prot_Ecto-sp6_S_contig8.16958.1|Name=mRNA_Ecto-sp6_S_contig8.16958.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=242bp
MGRGYSREAYLALVDHARATVPGVSISSDFISGFCGETEEDHRDTLSLME
TVRYDQAFMYAYSLREKTRAARRLKDDVPPTVKQQRLEEVIETFRRNALA
KNLEEEIGKEHLVLVEGRSRRWSEEAPELTGRTDGNKRVVFPDRGVIDGL
GRFSEVSCGQQQQRQQRTTLRPGDYAVVNVRQTSGITLRGSAIARTTLVE
HDALRVDGEKWRETVATERGGDEGRGTEVAVGTPGDGRAFV*
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mRNA from alignment at Ecto-sp6_S_contig8:7758..11026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.16958.1 ID=mRNA_Ecto-sp6_S_contig8.16958.1|Name=mRNA_Ecto-sp6_S_contig8.16958.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3269bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:7758..11026- (Ectocarpus species6 EcLAC_371)
ATGGGGAGGGGCTACTCGCGTGAGGCCTACCTGGCCCTGGTGGACCACGC CAGGGCCACGGTTCCAGGGGTTTCGATCAGCTCGGACTTCATCTCGGGGT TCTGCGGGGAGACCGAGGAGGACCACCGGGACACGCTGTCTCTCATGGAG ACCGTGCGATACGACCAGGTACGTCGTCGTTTGCTATAGACGTGTCTAAA TAACACGGCGGATCGGGGCAATGTCTACAATAGTGAACAAGTAGAAGAGG TGGATTGTTTGCCTTGTGTGCCCACGTCGGCAAATTCGTGCCTCATTGTC ACGCTCTGCCCTCGCCCTGTGCGTGCTCTGCGTGTGGGTGTGGGTGTTTT GGCGGTAACGTTGGCAGCAACGCGCGCGGGCGCGCGCACACACCGGGTTG TTCATTCCAGAATCTAATGGTTTGCGTCTCGGCGTGATAGAGCGAGAGGA AGAACAGCGGTGGCGACTCTCCTTTCTGCACCTCAAGTCATGAAGTCTGT CGATTTTTGTACTAGTATCCAGAAACAAGCTTTGCTTGCGGCCTTTTGAG ATTGGTCGTCGGAGTAACCCTGCATCGGCCGTAGTACATCATATCGGTGT TTTCGTTTTTTATCATCTACTTCTTTGTTTTTGTTTCCCGCTTGTCCTAA CGTGCCGTGACAAACGCGCGCCTTTTCTCCCCTTTTCCGTATGGCATGTG TCCCTTCTCTGTTTTTTGTGTTGTTGCTGCCTGCAAGGCGTTCATGTACG CGTACTCGCTGAGGGAGAAGACACGGGCAGCGCGAAGACTTAAGGACGAC GTCCCGCCGACAGTGAAACAGCAGCGATTAGAGGTGACCCCTCCCCACCT TTTCCTTCTTACTTCGTGGCTGTACGTTTGCTTGCGTCAAAGCACATCTA GCAAATCACCAGCGTTTACAAGGCGAGCATCCGCGGTTTTGGTGGTATGA TGAGTTTCCTGCAGCGCAGCGGCGGTGGCGGTGGATGGACTGCTTGCCTT GTGTGCGTTAGCAACGCCAACAGTGGTCGGGGTGATTTTTGATCGTGTGC TCTTACGGTAGATCGCTGGGTCGAATCAGCACCTGCTGGCTATTCGTAGG CGCCGCGCGTGCAAGCATGGCCAGGATTCGCTTTTCTGCCCTCGACACCC CTCGTCTCTTCTCACGCCGTACACAACACTTTGTTTATGGTTCTGCTCCC GGGTGTCGTCTGCGTGGTGCAGGAGGTCATTGAGACGTTTAGGAGAAACG CCTTGGCCAAGAACCTGGAGGAAGAGATCGGGAAGGAACACCTTGTGCTT GTGGAAGGCCGCAGCCGCAGGTAATCCCCTATGATAGGCACACCTCGGTC GGTATTCCCCCGAGCCATTACCAGGTTTTAGAGAGGTTACCACTCCAGAA AGAGGTGACTGCTGATTATCGTGCGGTTGTGGCAGTCATGCGCACGAACT TGGTCAGTGGTGCCACTGCTGTTTATACCTTTTACTCAGAAAGGTCGAGG AGCCGAGAAATCATCGTCGTGATTTTCTATCTCTGGCACTGAAGCATCTG TAGCCGAAGAGTGTACACACGACCTCAAGCCGCGTTTTCGTTGTATTTTC TGCTCCGTGCGCACTAAATAAAATCCATGGCAGATGGAGTGAGGAGGCGC CCGAGCTAACCGGCCGCACGGACGGGAACAAACGCGTGGTGTTTCCCGAC AGAGGCGTCATCGATGGACTGGGCCGGTTCTCGGAGGTGTCTTGCGGGCA GCAGCAGCAGCGGCAGCAGAGAGTGAGTGGTCGTGCTCGCGCCGAATATG TTGATGCTTGCCCCTTTTGCAAGTGTTGTTGGTCGTCTGAAATGTCGAGC GGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGTGGG TGGTCGCGCTCGCGCCGGATATGTTGATGCTTGCCCCTTTTGCAAGTGTT GGTGGTGGTCTGAAATGTCAAGCAGACAGCAGCAGCAGCAGCGGCACCAG CAGAGAGTCAGTCTCGGTCGTGCTTTGCGCCGAACGTGTTGGTGCTTGCC CCTGTAAGCGTTGGTTATGGTCGTCTTTTGTCTATTCGGACGCTCCTCTC GCCATGTAGTGACGGTTTTGTTACGTTTGGCCTCTCCTGAAACCACGTGC GAGGAATTTCGCAAACCGGATAAGGAGTTGAGGTGTTGAGGGCGCGAGAT TCTTTTCTTCTCCCAACTAGGTCTTATCCATTCCTCAGCACACAATCATT ATCTCTGCAGCCAATCAACTGTTTTTTTTCCCAGGGGATTTTGGATCTTG TCCGAGTCTTGGCCTTGCGGAGCGGCATCCGGAAACAGCAGTGCTGCCCT CCGCCCCCTTCTAACCGAGGGGACTTGGCCTGATGACCGTGCCCACGCAT GAGCACCACCCCCACCCCTGCTCCCAGCCATGTGGACCCTTGCCACAGCG CTGCTTGGGTTGGGTTTTCCTCCCAGTAGTATGCAAGCCTGGATTCCCGT CCTTCCAGTACTTGTATCCTCGATCCAAGCAAGCGCTTGTAACGTAGTGA TGCAGGAGGAAAAATGGCACGATCCAAGTACAGTACTTGTATGATACTGA TGTAGGAGGAAGAATGGCCAAACCGTGGGCGGCATCGTTGACGTGGATGT CACTTTCCAGACGATCGCCTGGCTCACCCCCCTACCTAAGGACGCCTGTG CCTCCCTGGAAAGCGATCGTCTGATGTCGTATGCTAGGCTCCGTCCCTGG TAGGTAGGTTCGGAGGACCGTTCTGCGCCACCTTCCTGCTTTCGGTCGTA CACCGGCACGTACACCATGGTACAAGTGTATCTCAGAAGGGATCAGAGGT TGTGGACACACCAGAAAGCAAGGACCTACACAAACACCCCCCCCCCCCGT TTGTGACAACTATGGCATGCAAGAAATGAGCAAACAAATACCCCCCCGTT TGTGACAACTATGGCATGCAAGCCATGAAGACGCCCCCTCACCAACCTCC CGCCCCCCCTTCTTTTTTCAAACTGCGTCCCTCTTGGCCAAAAGACGACT CTGCGACCCGGAGACTACGCGGTGGTGAACGTGCGCCAGACTTCCGGGAT CACTCTGAGAGGGTCAGCGATCGCCCGCACAACCCTGGTCGAACACGACG CGCTTCGCGTCGACGGGGAGAAATGGCGCGAAACAGTCGCCACGGAGAGG GGCGGGGACGAGGGCAGAGGGACAGAAGTTGCCGTCGGGACCCCGGGAGA CGGGCGCGCTTTCGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:7758..11026-

>mRNA_Ecto-sp6_S_contig8.16958.1 ID=mRNA_Ecto-sp6_S_contig8.16958.1|Name=mRNA_Ecto-sp6_S_contig8.16958.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:7758..11026- (Ectocarpus species6 EcLAC_371)
ATGGGGAGGGGCTACTCGCGTGAGGCCTACCTGGCCCTGGTGGACCACGC
CAGGGCCACGGTTCCAGGGGTTTCGATCAGCTCGGACTTCATCTCGGGGT
TCTGCGGGGAGACCGAGGAGGACCACCGGGACACGCTGTCTCTCATGGAG
ACCGTGCGATACGACCAGGCGTTCATGTACGCGTACTCGCTGAGGGAGAA
GACACGGGCAGCGCGAAGACTTAAGGACGACGTCCCGCCGACAGTGAAAC
AGCAGCGATTAGAGGAGGTCATTGAGACGTTTAGGAGAAACGCCTTGGCC
AAGAACCTGGAGGAAGAGATCGGGAAGGAACACCTTGTGCTTGTGGAAGG
CCGCAGCCGCAGATGGAGTGAGGAGGCGCCCGAGCTAACCGGCCGCACGG
ACGGGAACAAACGCGTGGTGTTTCCCGACAGAGGCGTCATCGATGGACTG
GGCCGGTTCTCGGAGGTGTCTTGCGGGCAGCAGCAGCAGCGGCAGCAGAG
AACGACTCTGCGACCCGGAGACTACGCGGTGGTGAACGTGCGCCAGACTT
CCGGGATCACTCTGAGAGGGTCAGCGATCGCCCGCACAACCCTGGTCGAA
CACGACGCGCTTCGCGTCGACGGGGAGAAATGGCGCGAAACAGTCGCCAC
GGAGAGGGGCGGGGACGAGGGCAGAGGGACAGAAGTTGCCGTCGGGACCC
CGGGAGACGGGCGCGCTTTCGTCTGA
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