mRNA_Ecto-sp6_S_contig111.1508.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig111.1508.1
Unique NamemRNA_Ecto-sp6_S_contig111.1508.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 557 bits (1436), Expect = 1.860e-196
Identity = 280/317 (88.33%), Postives = 286/317 (90.22%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLLARRQRVPQVANPDGAHQVPAERERSPLFEEAGERAEGRGMLLRHSEGPLQDPEARHGVPRAGAHRQRVFHVLHLAQHAAHLRRNGRAGGKHALGQQCRGGDHVGDRAGGGL 1217
            P   FLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYD+HIYLPSEQNGELDHVMKQYDRLGFS AMGSMDVTH+ W+K PYNL RSYTGKEGVPTIG  V VNHAGRA AVTEGF GSTNDKTIVCWDA VE+IRTDKQYTEKTFDV NEDGTTTTLKG  L       +     GAHQVPAERERSPLFEEAGERAEGRGMLLRH E PLQDPEARHGVPRAGAHRQRV HVLHLAQHAAHLRRNGRAGGKHA+GQQCRGGDHVGDRAGGGL
Sbjct:   90 PCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQCRGGDHVGDRAGGGL 406          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 408 bits (1049), Expect = 5.790e-137
Identity = 218/315 (69.21%), Postives = 229/315 (72.70%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLLARRQRVPQVAN------------------------PDGAHQVPAERERSPLFEEAGERAEGRGMLLRHSEGPLQDPEARHGVPRAGAHRQRVFHVLHLAQHAAHLRRNG 1139
            P   FLRL ALVKSK+WF T+GCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSA T                           N ELDHVM+QYDRLGFS +MGSMDVTH+GWSK PYNLARSYTGKEGVP IG  VMV+HAGRAIAVTEGF  STNDKTIVCWDA VE+IRTDKQYTEKTFDV NEDGTTTTLKG  L       ++ N                        PDG HQVPAERER  LFE AGERA+GRG+LLRH EG LQDPEARHGVPR GAHRQRVF  LHLAQHAAHLRRNG
Sbjct:  126 PYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKT---------------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAERERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHLRRNG 413          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 4.830e-122
Identity = 178/206 (86.41%), Postives = 185/206 (89.81%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLL 884
            P   FLRLVALVKSK+WF T+GCDAA RQSHPVEHKVLAWLTILGRGNCFASIYQ+SWMSA TVQ MFH FCKHFAREMYD+HIYLPSEQNGELDHVMKQYDRLGFS AMGSMDVTH+GWSK PYNLARSYTGKEGVPT+G  V VNHAGRAIAVTEGF  STNDKT VCWDA VE+IRTD QYTEKTFDV NEDGTTTTLKG  L
Sbjct:   63 PDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYL 268          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 1.020e-103
Identity = 163/234 (69.66%), Postives = 178/234 (76.07%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYT----------------------------EKTFDVCNEDGTTTTLKGVLL 884
            P  +FLRLVALVKSKNWF+TA  DA G  SHPVEHKVLAWLTILGRGNCFASIYQMSWMSA TVQ MFH FC+HFAREMYD+ I+LP+E++G+LDHVMKQYDRLGF+ A+GSMDVTH+ WS+ PYN ARSYTGKEG PTI   V V+HAGRAIAVTEGF GSTNDKTIVCWD  VE+I TDK YT                            EKTFDV NEDGTTTTLKG  L
Sbjct:   50 PYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYL 283          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.640e-93
Identity = 137/152 (90.13%), Postives = 140/152 (92.11%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRA 722
            P   FLRLVALVKSKNWF TAGCD AGR SHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFH FCKHFAREMYD+HIYLPSEQNGELDHVMKQYDRLGFS AMGSMDVTH+GWSK PYNLARSYTGKEGVPT+G  V VNHAGRA
Sbjct:   90 PYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRA 241          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 3.950e-93
Identity = 144/206 (69.90%), Postives = 161/206 (78.16%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLL 884
            P   FLRLV LVK K+WFAT   DA GR+ HPVEHKVLA LTILGRGN F SIY +SWMS  TVQ +FH FC+HFA EMYD+HI+LPSE+NGELD VM QY++LGF  AMGS DVTH+GWS+ PYN  RSYTGKEG PT+G  V VNHAGR +AVTEGF GSTNDKTI+C D  V+ IRTDKQY EK F V  +DGTT TLKG  L
Sbjct:   92 PYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYL 297          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 3.380e-89
Identity = 146/206 (70.87%), Postives = 154/206 (74.76%), Query Frame = 3
Query:  267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLL 884
            P   FLRL ALVKSK+WF T+GCDAAGRQSH VEHKVLAWLTILGRGNCFASIYQMSWMS  TVQ MFH F KHFAREMYD+HIYLPSEQNGELDHVM+Q DRLGF  AM SM VT                             VNHAGRAI VTEGF GSTNDKTI+CWDA VE+IRTDKQY ++TFDV NEDGTTTTLKG  L
Sbjct:  122 PYSFFLRLGALVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFAREMYDEHIYLPSEQNGELDHVMEQCDRLGFLGAMSSMGVT-----------------------------VNHAGRAIVVTEGFTGSTNDKTIICWDAAVEKIRTDKQYPKQTFDVYNEDGTTTTLKGCYL 298          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 8.180e-81
Identity = 195/404 (48.27%), Postives = 227/404 (56.19%), Query Frame = 1
Query:   28 ALLPATALAVALVALDEVQRNDLSQE---EEDTAPDLTRPRLSRTQRQRKDVETCAWAQMLEDKDLEDSNSRTSEQFRLDFRVPYAFSCGSWLWSRARTGSPLRAAMQQVGKATQWSTRCWPG*PYSAGATALQAYIRCRG*ALRPCRRCSTCSASTSHGKCTMITSTSRRNRTASWTTS*SSTTG-LAFRSRWGPWM*LIWVGASAPTT*PVRTRARRGFPRSGNRSWLITLAVQLP*LRASSAR----RTTRPSSAGMPRWRKFGRTSSTRRRPSTCATRMARRRRSKGCYLLVDNGYHKWQILMEPTKYRLSENDLLFSKRLESVRKDVECFFGILKGRFRIQKLAMAYHEQERIDNVFFTCCILHNMLHTFDGMDELVENTHWVSSAGVGTTLATEPEAD 1215
            ALLPA ALAVALVA+DEVQRNDLSQ+   EED A DL   RL+R+QRQRKDVETCAWAQ+LEDKDLEDS S T++QFR+DFRVPY F        +++    L AA   VG+A+          P      A    +  R        + S  SA T  G          R+         +  +G L    R G      WV    P         + GFP         T+A Q+  +    A     RT +  +          +T        T  T        KG YLLVDNGYHKWQIL+EP+KY LSENDLLFSKRL+SVR+D     GILKGRFRI KLAMAY  QERID+VFFTCCI+HNMLHTFDGMD+LVENT  VSSAGVG TLATE EAD
Sbjct:   54 ALLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWF-LAAATDAVGRASH---------PVEHKVLAWLTILG-RNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVRSG------WV-YGCPYNQARSYTGKEGFP---------TIAYQVVTIVCWDAAVEKIRTDKQYTE---------KTFDVYNEDGTTTT-------LKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEAD 414          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.350e-71
Identity = 184/425 (43.29%), Postives = 216/425 (50.82%), Query Frame = 1
Query:   19 GDDALLPATALAVALVALDEVQRNDLSQE---EEDTAPDLTRPRLSRTQRQRKDVETCAWAQMLEDKDLEDSNSRTSEQFRLDFRVPYAFSCGSWLWSRARTGSPLRAAMQQVGKATQWSTRCWPG*PYSAGATALQAYIRCRG*ALRPCRRCSTCSASTSHGKCTMITS-----------TSRRNRTASWTTS*SSTTGLAFRSRWGPWM*LIWVGASAPTT*PVRTRARRGFPRSGNRSWLITLAVQLP*LRASSARRTTRPSSAGMPRWRKFGRTSSTRRRPSTCATRMARRRRSKGCYLLVDNG------------YHKWQILMEPTKYRLSENDLLFSKRLESVRKDVECFFGILKGRFRIQKLAMAYHEQERIDNVFFTCCILHNMLHTFDGMDELVENTHWVSSAGVGTTLATEPEAD 1215
            G DALLPATALAVALVA+DE QRNDLSQ+   EED A DL R RL+R+Q QRKDVETCAWAQ+LEDKDLEDS S T++QF ++FRV     C      R R+G     A Q  G A            Y+ G     +  +            S  SA T  G    +             TS R R ASWTT     T +A++      + +   G +   T         GF  S N   +      +  +R                  +   +T        T  T        KGCYLLVDNG            +  WQIL+EP+K  LSENDLLFSKRLES             GR R  KLAM Y  QERIDNVFFTCCILHNMLHTFDG+D+LVENT+WVSSAGVG TLATEPE+D
Sbjct:    5 GMDALLPATALAVALVAIDEAQRNDLSQQYFLEEDPANDLPRERLTRSQTQRKDVETCAWAQLLEDKDLEDSTSITAKQFLVEFRV---LDCCD---GRRRSGKSPSGA-QDAGLAD-----------YTGGGNCFASIYQM-----------SWMSAKTVQGMFHKLCRHFAREMYDEHITSLRKRAASWTTQGGVPT-IAYQ------VTVDHAGRAIAVT--------EGFTGSTNDKTIFCWDAAVEKIRTDK---------------QYTDKTFDVYNEDGTTTT-------LKGCYLLVDNGTEPVFAFHLSVVFFHWQILIEPSKNPLSENDLLFSKRLES-------------GRVRTLKLAMVYQSQERIDNVFFTCCILHNMLHTFDGIDQLVENTNWVSSAGVGATLATEPESD 350          
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 3.000e-71
Identity = 118/168 (70.24%), Postives = 134/168 (79.76%), Query Frame = 3
Query:  372 KVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKG 875
            +VLAWLTILG+GNCFASI+QMSWMSA TVQ +FH FC+ FAREMYD+HI+LP+E++G+L HVMKQYDRLG                  PYN ARSYTGK+  PTI   V V+HA RAIAVTEGF GSTNDKTIVCWDA V++IRTDKQYTEKTFD+ NEDGTTTTLKG
Sbjct:   20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLGC-----------------PYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKG 170          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPI7_ECTSI1.860e-19688.33Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5KFR8_9PHAE5.790e-13769.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE4.830e-12286.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.020e-10369.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L642_9PHAE1.640e-9390.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE3.950e-9369.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL1_9PHAE3.380e-8970.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE8.180e-8148.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS2_9PHAE1.350e-7143.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE3.000e-7170.24DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig111contigEcto-sp6_S_contig111:28516..30893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.8
Seed ortholog evalue5e-21
Seed eggNOG ortholog2880.D7FSK2
Model size1220
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
Cds size522
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348805.8430338-CDS-Ecto-sp6_S_contig111:28515..288261682348805.8430338-CDS-Ecto-sp6_S_contig111:28515..28826Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig111 28516..28826 -
1682348805.853899-CDS-Ecto-sp6_S_contig111:29273..294841682348805.853899-CDS-Ecto-sp6_S_contig111:29273..29484Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig111 29274..29484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348805.8701346-UTR-Ecto-sp6_S_contig111:29484..298081682348805.8701346-UTR-Ecto-sp6_S_contig111:29484..29808Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig111 29485..29808 -
1682348805.8802269-UTR-Ecto-sp6_S_contig111:30519..308931682348805.8802269-UTR-Ecto-sp6_S_contig111:30519..30893Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig111 30520..30893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig111.1508.1prot_Ecto-sp6_S_contig111.1508.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig111 28516..29484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig111.1508.1

>prot_Ecto-sp6_S_contig111.1508.1 ID=prot_Ecto-sp6_S_contig111.1508.1|Name=mRNA_Ecto-sp6_S_contig111.1508.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=174bp
MVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNE
DGTTTTLKGVLLARRQRVPQVANPDGAHQVPAERERSPLFEEAGERAEGR
GMLLRHSEGPLQDPEARHGVPRAGAHRQRVFHVLHLAQHAAHLRRNGRAG
GKHALGQQCRGGDHVGDRAGGGL*
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mRNA from alignment at Ecto-sp6_S_contig111:28516..30893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig111.1508.1 ID=mRNA_Ecto-sp6_S_contig111.1508.1|Name=mRNA_Ecto-sp6_S_contig111.1508.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2378bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:28516..30893- (Ectocarpus species6 EcLAC_371)
ATGGCCGAGACCGGCGAGGGTGATGATGCCCTGCTGCCAGCGACTGCGCT TGCGGTGGCCTTGGTGGCCCTCGATGAGGTCCAACGCAACGACTTGTCGC AAGAGGAGGAGGATACTGCCCCCGACCTTACCCGCCCTAGACTCTCAAGA ACGCAGCGACAGAGAAAAGATGTGGAGACGTGCGCTTGGGCACAGATGTT GGAGGACAAAGACCTCGAGGACAGCAACAGCAGAACCTCCGAGCAGTTTC GCCTTGACTTCCGCGTCCCCTACGCATTTTCCTGCGGCTCGTGGCTTTGG TCAAGAGCAAGAACTGGTTCGCCACTGCGGGCTGCGATGCAGCAGGTCGG CAAAGCCACCCAGTGGAGCACAAGGTAAGCTGACGGCATGTATATCTAAC GGCATGTATGTCAGATTTGTACGAGTGCAGACTCTGCCCATACCTAGAAG AAGCTGCTGTTAAAACAAGCGGAGGAACTACAGTACGTGTATTGCAACTA ACCACAGCAGCAGTGCTTCCGCATATGCATACAGTCGAGCACCAGTGCTT CCGCATACAGCAGTCGAGCACAAGCATTCTGGAATATTACGGTACAGACG CTCTGTCCATAGCCTACAAGAAGGGGAGTTCTGCTGATGTAGTGTAGAGT TAATCACGCGTAGGAACCAGCGCATTTTTAGCACTGTTGTTCAGCTGCAT GCCGTCTCCCGTGGTACGTCCTAGCCGAGACGCGCTTGGTGACCGCTGGC CGAGCTCTCCAAATCTAGCAAAAAATTTCCCGCGGTCGCTCTGCTGTCGG GCATGGCAGCATATGCACTGCTTCTACATACACTGCTATGCCGTTGTTAC GTCACCTTGGGTTGAACTGGCGTCCGAGATATCGCAGGAGACGAGTCCTC CAGTCAGCGCGACATCGCTGAATAGGCTTAACTCACAGTCGTTGAGTTGT TTAACGCATGGCACAATAATCAGTCTCCCGCCCGTGAGATGCTTTCGCAA GGCTAATAGTACAGGCAACCACACCACATTACTAACAGAACCGCTGTATC CCGTGTGTACGTTCCTTGTTGCACTTGCTGTGCAGGTGCTGGCCTGGCTG ACCATACTCGGCCGGGGCAACTGCTTTGCAAGCATATATCAGATGTCGTG GATGAGCGCTGCGACCGTGCAGGCGATGTTCCACATGTTCTGCAAGCACT TCGCACGGGAAATGTACGATGATCACATCTACCTCCCGTCGGAACAGAAC GGCGAGCTGGACCACGTCATGAAGCAGTACGACCGGCTTGGCTTTTCGGT CGCGATGGGGTCCATGGATGTAACTCATATGGGTTGGAGCAAGCGCCCCT ACAACTTAGCCCGTTCGTACACGGGCAAGGAGGGGGTTCCCACGATCGGG TAATAGGTCATGGTTAATCACGCTGGCCGTGCAATTGCCGTGACTGAGGG CTTCATCGGCTCGACGAACGACAAGACCATCGTCTGCTGGGATGCCACGG TGGAGGAAATTCGGACGGACAAGCAGTACACGGAGAAGACCTTCGACGTG TGCAACGAGGATGGCACGACGACGACGCTCAAAGGGGTGCTACTTGCTCG TCGACAACGGGTACCACAAGGTGAATGAATAGAACGCGTCGTATTTTTGG TGCCCAACGGTAGTGTTTTGGAAGAGGTATGTGTCCGGCCTGAGAGGGAG AGAGAGGGAGAGAGAGGCAGAGAGAGATGGAGAGGCAGAGAACGAGAGGG AGAGATCGAGAGACAGAGAACGAGAGGGAGAGATCGAGAGAGCGCTGCCG AGTGAAGTATTTCTGATCTCGGGAAATCATACAGATAGTTTCGGACGTTT TCATCGCCAATCGTTCATGGTGCTGAAATCCGAAACGGAAAGGAAGCAGA ACCGAGGTGTTTCATTGGTGTTTTTGTCGCACCTCCCTTCGACCCCGAAG CCCCTGCTCCCCCGCATTTCAGAAGCTCCGAGAGCTGTAATTTCGTAGCT TGATAACAGCATAGAATCGAAACCTTCCTCCCCTTCTCCCTTCCCCTCTC GTCGTTTATTTTTGCAGTGGCAAATCCTGATGGAGCCCACCAAGTACCGG CTGAGCGAGAACGATCTCCTCTTTTCGAAGAGGCTGGAGAGCGTGCGGAA GGACGTGGAATGCTTCTTCGGCATTCTGAAGGGCCGCTTCAGGATCCAGA AGCTCGCCATGGCGTACCACGAGCAGGAGCGCATCGACAACGTGTTTTTC ACGTGCTGCATCTTGCACAACATGCTGCACACCTTCGACGGAATGGACGA GCTGGTGGAAAACACGCACTGGGTCAGCAGTGCCGGGGTGGGGACCACGT TGGCGACCGAGCCGGAGGCGGACTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig111:28516..30893-

>mRNA_Ecto-sp6_S_contig111.1508.1 ID=mRNA_Ecto-sp6_S_contig111.1508.1|Name=mRNA_Ecto-sp6_S_contig111.1508.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:28516..30893- (Ectocarpus species6 EcLAC_371)
ATGGTTAATCACGCTGGCCGTGCAATTGCCGTGACTGAGGGCTTCATCGG
CTCGACGAACGACAAGACCATCGTCTGCTGGGATGCCACGGTGGAGGAAA
TTCGGACGGACAAGCAGTACACGGAGAAGACCTTCGACGTGTGCAACGAG
GATGGCACGACGACGACGCTCAAAGGGGTGCTACTTGCTCGTCGACAACG
GGTACCACAAGTGGCAAATCCTGATGGAGCCCACCAAGTACCGGCTGAGC
GAGAACGATCTCCTCTTTTCGAAGAGGCTGGAGAGCGTGCGGAAGGACGT
GGAATGCTTCTTCGGCATTCTGAAGGGCCGCTTCAGGATCCAGAAGCTCG
CCATGGCGTACCACGAGCAGGAGCGCATCGACAACGTGTTTTTCACGTGC
TGCATCTTGCACAACATGCTGCACACCTTCGACGGAATGGACGAGCTGGT
GGAAAACACGCACTGGGTCAGCAGTGCCGGGGTGGGGACCACGTTGGCGA
CCGAGCCGGAGGCGGACTCTAG
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