mRNA_Ecto-sp6_S_contig111.1508.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 557 bits (1436), Expect = 1.860e-196 Identity = 280/317 (88.33%), Postives = 286/317 (90.22%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLLARRQRVPQVANPDGAHQVPAERERSPLFEEAGERAEGRGMLLRHSEGPLQDPEARHGVPRAGAHRQRVFHVLHLAQHAAHLRRNGRAGGKHALGQQCRGGDHVGDRAGGGL 1217
P FLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYD+HIYLPSEQNGELDHVMKQYDRLGFS AMGSMDVTH+ W+K PYNL RSYTGKEGVPTIG V VNHAGRA AVTEGF GSTNDKTIVCWDA VE+IRTDKQYTEKTFDV NEDGTTTTLKG L + GAHQVPAERERSPLFEEAGERAEGRGMLLRH E PLQDPEARHGVPRAGAHRQRV HVLHLAQHAAHLRRNGRAGGKHA+GQQCRGGDHVGDRAGGGL
Sbjct: 90 PCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQCRGGDHVGDRAGGGL 406
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE) HSP 1 Score: 408 bits (1049), Expect = 5.790e-137 Identity = 218/315 (69.21%), Postives = 229/315 (72.70%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLLARRQRVPQVAN------------------------PDGAHQVPAERERSPLFEEAGERAEGRGMLLRHSEGPLQDPEARHGVPRAGAHRQRVFHVLHLAQHAAHLRRNG 1139
P FLRL ALVKSK+WF T+GCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSA T N ELDHVM+QYDRLGFS +MGSMDVTH+GWSK PYNLARSYTGKEGVP IG VMV+HAGRAIAVTEGF STNDKTIVCWDA VE+IRTDKQYTEKTFDV NEDGTTTTLKG L ++ N PDG HQVPAERER LFE AGERA+GRG+LLRH EG LQDPEARHGVPR GAHRQRVF LHLAQHAAHLRRNG
Sbjct: 126 PYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKT---------------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAERERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHLRRNG 413
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 368 bits (944), Expect = 4.830e-122 Identity = 178/206 (86.41%), Postives = 185/206 (89.81%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLL 884
P FLRLVALVKSK+WF T+GCDAA RQSHPVEHKVLAWLTILGRGNCFASIYQ+SWMSA TVQ MFH FCKHFAREMYD+HIYLPSEQNGELDHVMKQYDRLGFS AMGSMDVTH+GWSK PYNLARSYTGKEGVPT+G V VNHAGRAIAVTEGF STNDKT VCWDA VE+IRTD QYTEKTFDV NEDGTTTTLKG L
Sbjct: 63 PDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYL 268
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 323 bits (827), Expect = 1.020e-103 Identity = 163/234 (69.66%), Postives = 178/234 (76.07%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYT----------------------------EKTFDVCNEDGTTTTLKGVLL 884
P +FLRLVALVKSKNWF+TA DA G SHPVEHKVLAWLTILGRGNCFASIYQMSWMSA TVQ MFH FC+HFAREMYD+ I+LP+E++G+LDHVMKQYDRLGF+ A+GSMDVTH+ WS+ PYN ARSYTGKEG PTI V V+HAGRAIAVTEGF GSTNDKTIVCWD VE+I TDK YT EKTFDV NEDGTTTTLKG L
Sbjct: 50 PYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYL 283
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 290 bits (741), Expect = 1.640e-93 Identity = 137/152 (90.13%), Postives = 140/152 (92.11%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRA 722
P FLRLVALVKSKNWF TAGCD AGR SHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFH FCKHFAREMYD+HIYLPSEQNGELDHVMKQYDRLGFS AMGSMDVTH+GWSK PYNLARSYTGKEGVPT+G V VNHAGRA
Sbjct: 90 PYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRA 241
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 296 bits (758), Expect = 3.950e-93 Identity = 144/206 (69.90%), Postives = 161/206 (78.16%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLL 884
P FLRLV LVK K+WFAT DA GR+ HPVEHKVLA LTILGRGN F SIY +SWMS TVQ +FH FC+HFA EMYD+HI+LPSE+NGELD VM QY++LGF AMGS DVTH+GWS+ PYN RSYTGKEG PT+G V VNHAGR +AVTEGF GSTNDKTI+C D V+ IRTDKQY EK F V +DGTT TLKG L
Sbjct: 92 PYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYL 297
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE) HSP 1 Score: 285 bits (728), Expect = 3.380e-89 Identity = 146/206 (70.87%), Postives = 154/206 (74.76%), Query Frame = 3
Query: 267 PLRIFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKGVLL 884
P FLRL ALVKSK+WF T+GCDAAGRQSH VEHKVLAWLTILGRGNCFASIYQMSWMS TVQ MFH F KHFAREMYD+HIYLPSEQNGELDHVM+Q DRLGF AM SM VT VNHAGRAI VTEGF GSTNDKTI+CWDA VE+IRTDKQY ++TFDV NEDGTTTTLKG L
Sbjct: 122 PYSFFLRLGALVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFAREMYDEHIYLPSEQNGELDHVMEQCDRLGFLGAMSSMGVT-----------------------------VNHAGRAIVVTEGFTGSTNDKTIICWDAAVEKIRTDKQYPKQTFDVYNEDGTTTTLKGCYL 298
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE) HSP 1 Score: 265 bits (676), Expect = 8.180e-81 Identity = 195/404 (48.27%), Postives = 227/404 (56.19%), Query Frame = 1
Query: 28 ALLPATALAVALVALDEVQRNDLSQE---EEDTAPDLTRPRLSRTQRQRKDVETCAWAQMLEDKDLEDSNSRTSEQFRLDFRVPYAFSCGSWLWSRARTGSPLRAAMQQVGKATQWSTRCWPG*PYSAGATALQAYIRCRG*ALRPCRRCSTCSASTSHGKCTMITSTSRRNRTASWTTS*SSTTG-LAFRSRWGPWM*LIWVGASAPTT*PVRTRARRGFPRSGNRSWLITLAVQLP*LRASSAR----RTTRPSSAGMPRWRKFGRTSSTRRRPSTCATRMARRRRSKGCYLLVDNGYHKWQILMEPTKYRLSENDLLFSKRLESVRKDVECFFGILKGRFRIQKLAMAYHEQERIDNVFFTCCILHNMLHTFDGMDELVENTHWVSSAGVGTTLATEPEAD 1215
ALLPA ALAVALVA+DEVQRNDLSQ+ EED A DL RL+R+QRQRKDVETCAWAQ+LEDKDLEDS S T++QFR+DFRVPY F +++ L AA VG+A+ P A + R + S SA T G R+ + +G L R G WV P + GFP T+A Q+ + A RT + + +T T T KG YLLVDNGYHKWQIL+EP+KY LSENDLLFSKRL+SVR+D GILKGRFRI KLAMAY QERID+VFFTCCI+HNMLHTFDGMD+LVENT VSSAGVG TLATE EAD
Sbjct: 54 ALLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWF-LAAATDAVGRASH---------PVEHKVLAWLTILG-RNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVRSG------WV-YGCPYNQARSYTGKEGFP---------TIAYQVVTIVCWDAAVEKIRTDKQYTE---------KTFDVYNEDGTTTT-------LKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEAD 414
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE) HSP 1 Score: 239 bits (609), Expect = 1.350e-71 Identity = 184/425 (43.29%), Postives = 216/425 (50.82%), Query Frame = 1
Query: 19 GDDALLPATALAVALVALDEVQRNDLSQE---EEDTAPDLTRPRLSRTQRQRKDVETCAWAQMLEDKDLEDSNSRTSEQFRLDFRVPYAFSCGSWLWSRARTGSPLRAAMQQVGKATQWSTRCWPG*PYSAGATALQAYIRCRG*ALRPCRRCSTCSASTSHGKCTMITS-----------TSRRNRTASWTTS*SSTTGLAFRSRWGPWM*LIWVGASAPTT*PVRTRARRGFPRSGNRSWLITLAVQLP*LRASSARRTTRPSSAGMPRWRKFGRTSSTRRRPSTCATRMARRRRSKGCYLLVDNG------------YHKWQILMEPTKYRLSENDLLFSKRLESVRKDVECFFGILKGRFRIQKLAMAYHEQERIDNVFFTCCILHNMLHTFDGMDELVENTHWVSSAGVGTTLATEPEAD 1215
G DALLPATALAVALVA+DE QRNDLSQ+ EED A DL R RL+R+Q QRKDVETCAWAQ+LEDKDLEDS S T++QF ++FRV C R R+G A Q G A Y+ G + + S SA T G + TS R R ASWTT T +A++ + + G + T GF S N + + +R + +T T T KGCYLLVDNG + WQIL+EP+K LSENDLLFSKRLES GR R KLAM Y QERIDNVFFTCCILHNMLHTFDG+D+LVENT+WVSSAGVG TLATEPE+D
Sbjct: 5 GMDALLPATALAVALVAIDEAQRNDLSQQYFLEEDPANDLPRERLTRSQTQRKDVETCAWAQLLEDKDLEDSTSITAKQFLVEFRV---LDCCD---GRRRSGKSPSGA-QDAGLAD-----------YTGGGNCFASIYQM-----------SWMSAKTVQGMFHKLCRHFAREMYDEHITSLRKRAASWTTQGGVPT-IAYQ------VTVDHAGRAIAVT--------EGFTGSTNDKTIFCWDAAVEKIRTDK---------------QYTDKTFDVYNEDGTTTT-------LKGCYLLVDNGTEPVFAFHLSVVFFHWQILIEPSKNPLSENDLLFSKRLES-------------GRVRTLKLAMVYQSQERIDNVFFTCCILHNMLHTFDGIDQLVENTNWVSSAGVGATLATEPESD 350
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 236 bits (601), Expect = 3.000e-71 Identity = 118/168 (70.24%), Postives = 134/168 (79.76%), Query Frame = 3
Query: 372 KVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDDHIYLPSEQNGELDHVMKQYDRLGFSVAMGSMDVTHMGWSKRPYNLARSYTGKEGVPTIG**VMVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEDGTTTTLKG 875
+VLAWLTILG+GNCFASI+QMSWMSA TVQ +FH FC+ FAREMYD+HI+LP+E++G+L HVMKQYDRLG PYN ARSYTGK+ PTI V V+HA RAIAVTEGF GSTNDKTIVCWDA V++IRTDKQYTEKTFD+ NEDGTTTTLKG
Sbjct: 20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLGC-----------------PYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKG 170 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig111.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig111.1508.1 >prot_Ecto-sp6_S_contig111.1508.1 ID=prot_Ecto-sp6_S_contig111.1508.1|Name=mRNA_Ecto-sp6_S_contig111.1508.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=174bp MVNHAGRAIAVTEGFIGSTNDKTIVCWDATVEEIRTDKQYTEKTFDVCNEback to top mRNA from alignment at Ecto-sp6_S_contig111:28516..30893- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig111.1508.1 ID=mRNA_Ecto-sp6_S_contig111.1508.1|Name=mRNA_Ecto-sp6_S_contig111.1508.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2378bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:28516..30893- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig111:28516..30893- >mRNA_Ecto-sp6_S_contig111.1508.1 ID=mRNA_Ecto-sp6_S_contig111.1508.1|Name=mRNA_Ecto-sp6_S_contig111.1508.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:28516..30893- (Ectocarpus species6 EcLAC_371)back to top |