mRNA_Ecto-sp6_S_contig110.1482.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig110.1482.1
Unique NamemRNA_Ecto-sp6_S_contig110.1482.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: D7G4K8_ECTSI (Leucine zipper transcription factor-like protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K8_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 4.500e-158
Identity = 249/253 (98.42%), Postives = 250/253 (98.81%), Query Frame = 1
Query:  106 MESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFKAPDKSETPPKEVLGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGDDAKQVEEADNVVAEGKD 864
            MESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQ ASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEAL+ARVAGLQQDCAILLRERDEEK EAANLRRKLRFKAPDKSETPPKEV GDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGDDAKQVEEADNVVAEGKD
Sbjct:    1 MESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQAASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALQARVAGLQQDCAILLRERDEEKAEAANLRRKLRFKAPDKSETPPKEVSGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGDDAKQVEEADNVVAEGKD 253          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A836C9F0_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.460e-40
Identity = 126/348 (36.21%), Postives = 173/348 (49.71%), Query Frame = 1
Query:   10 NSTFGCLTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGA-SLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAG----------------------------------------LQQDCAILLRERD--------------------------------EEKTEAANLRRKLRFKAPDKSETPPKEVLGDKGAADVEAARQEISALQA-LNE------RRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGD 813
            ++TF  LT  HE  +R YL+F+RAKRDIAL+ +++EF DI NDRL E MY Q +VE+ILD L   V  N+RQE+GA+  M+++L+KQ+LE AE +GA  L  +T  +ED+A+L+ +E+MR DG    ++  A RLVSIKDEHARL EE     A  +A +  V                                          LQ+ C  L  ER                                  EKTE     + L+ +A  K                 E  R+++  +Q  L+E      +RL +S QF +LK L+SSKS QVV+LRRRL RY+P+DGD
Sbjct:    2 STTFCTLTPEHEEQIRFYLRFMRAKRDIALQQLDNEFQDIKNDRLMEQMYPQDEVENILDDLSRLVRANVRQEIGALMGMTSILLKQLLEGAEAKGALQLEMNTGAIEDRAVLDAIEKMRTDGPVVPRAN-AGRLVSIKDEHARLMEERDKADAACKAAQLAVVSDLRERNSHVIRNKVXXXXXXXXXXXXXQHTCGAKRPDPPQLQERCQRLQAERILLALALISMSYGLRSLHQXXXXXXXXXATAALREKTELQAQFKALQLEAGGKXXXXXXXXXXXXXXXXXEDLRRQLVQVQRRLDEEEEEARKRLADSKQFHQLKALLSSKSDQVVALRRRLARYDPNDGD 348          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A7S2UVX7_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVX7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.660e-36
Identity = 91/274 (33.21%), Postives = 145/274 (52.92%), Query Frame = 1
Query:   22 GCLTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFKAPDKSETPPKEVLGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGDDAKQVEEADN 843
            G L+  H+  +R +++F R+KRD+AL++++++F+D+ NDRL EDMYSQ DV  IL+ L   V  N+RQE+    NM+ LL+KQ+ E A++QG  L+ DT  VED++LL+EVE MR+D     +     +L SIKDEH RL +E                                                        ++  D    ++ + + E+S   A  +RR+ E+ QFQ+L+ ++S ++ Q+  LRRRL +YE  D D+   +E+ D+
Sbjct:    5 GRLSGEHQEQIRKFMRFFRSKRDVALQALDTDFEDVRNDRLFEDMYSQDDVSDILESLNNMVKGNMRQELATTVNMTVLLLKQLFEGADEQGVHLSMDTGIVEDESLLKEVESMRLDVPAAVKRSGTGKLTSIKDEHQRLVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISADL-QNELSSLKAELSEANAAQDRRVMETRQFQQLRGMLSQRNSQLSDLRRRLAKYENMDDDNDAIIEDDDD 277          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A067CKY6_SAPPC (Leucine zipper transcription factor-like protein 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKY6_SAPPC)

HSP 1 Score: 125 bits (314), Expect = 9.100e-31
Identity = 93/278 (33.45%), Postives = 158/278 (56.83%), Query Frame = 1
Query:   13 STFGCLTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLS-EDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFKAPDKSETPPKEVLGDKGA-ADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGDDAKQVEEAD 840
            ST G + + H+  +  +LKF R++    L ++++EFDD  +DRLS +DMYSQ+DV  +L  L   +  N R E+    NM+ALL++Q+  +AE+    L  DT  VED+ +LE+VER+ V   +     +AS   +++ +  R  EE +++Q +N++L  R+  LQ DC+  L+++   + +   LR      +    +   KE+   + A A+ EA+ +E        E  ++++  F +LKK+V  K+  +  LRRRL +YEP+D DDAK  ++ D
Sbjct:    2 STKGGMNAHHQAEISKFLKFFRSRMATHLENIDAEFDDTRSDRLSSDDMYSQKDVTDVLTSLCFAIKANARSELQDTINMTALLLRQVFTEAEENQLRLELDTGIVEDKDMLEKVERLSV-AEWAGDEKRASAKKAVQPKAGRSDEEFESLQKENQSLRGRLEQLQVDCSRALKDKSRLQDDMDELRHAQTTSSGRHVDALEKELRAARDALAEYEASAKE-------EEDHISQTKPFLQLKKMVKDKNDLIQQLRRRLRKYEPED-DDAKAADDDD 270          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A7S3ME01_9STRA (Leucine zipper transcription factor-like protein 1 n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3ME01_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.850e-29
Identity = 86/272 (31.62%), Postives = 149/272 (54.78%), Query Frame = 1
Query:   19 FGCLTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFKAPDKSETPPKEVLGDKGAA-DVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPD-----DGDD 816
            F  L+  + + +R YL+F R K+D  +R +ESEF DI ND+L E M++++D+    D L   + +++  ++  + NM AL + Q+L +++ +G  L  +T+ +E+QALL+ V++M +D A  + + + + L S +DE   + E+T  ++  N  L+A V  L+Q                    R L+  A  K      + L  +  A  +E A++E       N +R+ E+ QFQ+++KL+ S+S ++  LR+RL RYEPD     DGDD
Sbjct:    4 FEDLSQDNHDQIRKYLRFFRQKKDGIIRDIESEFADIRNDKLEETMFTKEDMLEYTDFLSSAIKSHVSADIAGIINMGALAVNQLLVNSQDKGVELTLETAPLENQALLDAVDKMSLD-AMPKNAKRGTTLTSFRDESKAMREQTSRLEETNARLQAEVNSLRQ--------------RLGQADRTLQSVAESKHTDDESDRLAMRDLARSLEEAKEE-------NNKRIAETSQFQQMRKLMQSQSAKIRDLRKRLERYEPDSVKEDDGDD 253          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A1W0A2U6_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2U6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.300e-28
Identity = 91/273 (33.33%), Postives = 154/273 (56.41%), Query Frame = 1
Query:   28 LTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLS-EDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFKAPDKSETPPKEVLGDKGA-ADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPDDGDDAKQVEEAD 840
            + + H+  +  +LKF R++ +  L ++E+EF+D  +DRLS +D+YSQ+DV  +L  L   V  N R E     NM+ALL++Q+  +AE    +L  DT  VED+ +LE+VER+ V   +     ++S+ V+ K   +R  EE +++Q +N+ L  R+  LQ DC   L+E+   + +   LR      +    +   KE+   +   AD EA+ +E           ++++ QFQ+LKK+V+ K++ + SLRRRL +YE +D  D K  ++ D
Sbjct:    6 MNAHHQAELSKFLKFFRSRMNTHLENIEAEFEDTRSDRLSSDDVYSQKDVTDVLKSLCFAVKANARSEHQDTINMTALLLRQVFSEAEDNQLNLELDTGIVEDKDMLEKVERLSV-AEWAGDEKRSSKKVAAKP--SRTDEEFESLQKENQQLRGRLEQLQTDCTRALKEKTRLQDDMEELRHAQTTSSGRHIDALEKELKAARETIADYEASAKETDD-------HISQTKQFQQLKKMVTEKNEMIQSLRRRLQKYESED--DVKNADDDD 266          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A485LNL0_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNL0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.710e-28
Identity = 91/261 (34.87%), Postives = 152/261 (58.24%), Query Frame = 1
Query:   28 LTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLS-EDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRF-KAPDKSETPPKEVLGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPD 804
            L + H+  +  +LKF R++    + ++E+EFDD  +DRLS +D+YSQ+DV  +L  L   V  N R E+    NM+ALL++Q+  +A+    ++  DT  VED+ +LE+VER+ V      +  +A ++V+ K  H    EE +T+Q +N+ L  R+  LQ+DC+  L+E+   + +   LR+     +  D  E   KE      + D+  A  E SA +A   + + ++ QFQ+LKK+V+ K++ +  LR+RLL+YEPD
Sbjct:    5 LNTHHQQEISKFLKFFRSRLATHIENIEAEFDDTLSDRLSSDDVYSQKDVTDVLKSLCFAVKANARSELQDTINMTALLLRQVFHEAQDNRMTMELDTGIVEDKDMLEKVERLSVAEWAADERREAKKVVA-KPTHD---EEFETVQKENQNLRQRLEQLQKDCSKALKEKQRAQDDMDELRQAAHASRHVDALERELKE------SRDI-IAEYERSAKEA--NQHITQTKQFQQLKKMVAQKNESLKDLRKRLLKYEPD 252          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A6G0WSB8_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSB8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.520e-25
Identity = 83/265 (31.32%), Postives = 149/265 (56.23%), Query Frame = 1
Query:   28 LTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLS-EDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEE-TQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRR----KLRFKAPDKSETPPKEVLGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPD 804
            L + H+  +  +LK  R++    L ++E++F+D  +DRLS +DMYSQ+DV  +L  L   V  N R E+    NM+ALL++Q+  +A+    ++  DT T+ED+ +L++VER+ V      +     R  + K   A L +E  +T+Q +NE L  R+  LQ+DC+  L+++   + +   LR+         A +K     ++++     AD E + +E +       + + ++ QFQ+LKK+++ K++ V +LR+RLL+YE D
Sbjct:    5 LNAHHQQEISKFLKLFRSRLASHLENIEADFEDTLSDRLSSDDMYSQKDVTDVLKSLCFAVKANARSELQDTINMTALLLRQVFHEAQDNRINMELDTGTIEDKDMLDKVERLSV-----AEWASDERRATKKVAKAALNDEGIETLQKENENLRQRLEQLQRDCSKALKDKQRMQDDMEELRQASHASRHVDALEKELKESRDII-----ADYERSAKEAN-------QHITQTKQFQQLKKMIAQKNETVKALRKRLLKYEAD 252          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: W4GJ30_9STRA (Leucine zipper transcription factor-like protein 1 n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJ30_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.230e-22
Identity = 85/277 (30.69%), Postives = 148/277 (53.43%), Query Frame = 1
Query:   28 LTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLS-EDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVD--GAFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFK----APDKSETPPKEVLGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSSKSKQVVSLRRRLLRYEPD-DGDDAKQVEE 834
            L + H+  +  +LKF R++    + ++++EF+D  +DRLS +D+YSQ+DV  +L  L   V  N R E+    NM+ALL++Q+  +A+    ++  DT  VED+ +LE+VERM V    A  R+     +       H    EE + ++  N +L  RV  LQ+D A   +++   + +   LR+         A +K     ++++     AD E + +E +       + + ++ QFQ+LKK+V  K+  + +LR+RLL++EPD D DD    +E
Sbjct:    5 LNAHHQQEISKFLKFFRSRLATHIENIDAEFEDTLSDRLSSDDVYSQKDVTDVLKSLSFAVKANARSELQDTINMTALLLRQVFHEAQDNRLNIELDTGIVEDKDMLEKVERMSVAEWAADERRPDGKKQPTKPSRHHD---EEFEVLEKDNHSLRLRVEQLQKDVAKAAKDKQRAQDDMDELRQAAHASRHVDALEKELRESRDII-----ADYERSAKEAN-------QHITQTKQFQQLKKMVGQKNDALKALRKRLLKFEPDADIDDVDDDDE 266          
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Match: A0A7S1G303_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G303_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.050e-19
Identity = 61/174 (35.06%), Postives = 101/174 (58.05%), Query Frame = 1
Query:   34 SSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGASLAFDTSTVEDQALLEEVERMRVDG----AFRRQSGQASRLVSIKDEHARLAEETQTMQAQNEALEARVAGLQQDCAILLRERDE 543
            ++HE  V+ +LKF  +KRDI +  + S F++  + R+ EDMYS+ +VE +LD L G V    R+++   + M+AL+++Q++  A++ G  +  D S  ED++LL +V + R D     A   +    ++L S+KDEH RLA E++ M  Q   L+ R   +   C   LRE+ E
Sbjct:    2 AAHEQ-VQDFLKFFASKRDITVAEVGSLFEETRDTRVLEDMYSRDEVEELLDSLLGAVQDTARRDLEKASQMAALVLEQVIAQAKRAGVDVDVDMSKTEDESLLADVGKARDDSFGKEAEEERRATTTKLESLKDEHTRLASESEKMSEQVAQLQERNKTVMAQCTKALREKSE 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4K8_ECTSI4.500e-15898.42Leucine zipper transcription factor-like protein 1... [more]
A0A836C9F0_9STRA2.460e-4036.21Leucine zipper transcription factor-like protein 1... [more]
A0A7S2UVX7_9STRA8.660e-3633.21Leucine zipper transcription factor-like protein 1... [more]
A0A067CKY6_SAPPC9.100e-3133.45Leucine zipper transcription factor-like protein 1... [more]
A0A7S3ME01_9STRA9.850e-2931.62Leucine zipper transcription factor-like protein 1... [more]
A0A1W0A2U6_9STRA1.300e-2833.33Leucine zipper transcription factor-like protein 1... [more]
A0A485LNL0_9STRA8.710e-2834.87Leucine zipper transcription factor-like protein 1... [more]
A0A6G0WSB8_9STRA7.520e-2531.32Leucine zipper transcription factor-like protein 1... [more]
W4GJ30_9STRA2.230e-2230.69Leucine zipper transcription factor-like protein 1... [more]
A0A7S1G303_9STRA1.050e-1935.06Leucine zipper transcription factor-like protein 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:271955..277991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score119.0
Seed ortholog evalue3.6e-24
Seed eggNOG ortholog112098.XP_008613691.1
Preferred nameLZTFL1
Model size867
KEGG koko:K19400
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0032879,GO:0032880,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0050789,GO:0060341,GO:0065007,GO:1903564,GO:1903565,GO:1903567,GO:1903568,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905475,GO:1905476
Exons10
EggNOG free text desc.negative regulation of protein localization to ciliary membrane
EggNOG OGs28J4B@1,2QRGB@2759
Ec32 ortholog descriptionLeucine zipper domain protein
Ec32 orthologEc-07_000230.1
Cds size867
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1482.1prot_Ecto-sp6_S_contig110.1482.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig110 271955..277991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348802.9569254-CDS-Ecto-sp6_S_contig110:271954..2720591682348802.9569254-CDS-Ecto-sp6_S_contig110:271954..272059Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 271955..272059 -
1682348802.9658387-CDS-Ecto-sp6_S_contig110:272361..2724391682348802.9658387-CDS-Ecto-sp6_S_contig110:272361..272439Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 272362..272439 -
1682348802.9729657-CDS-Ecto-sp6_S_contig110:273020..2731231682348802.9729657-CDS-Ecto-sp6_S_contig110:273020..273123Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 273021..273123 -
1682348802.9801931-CDS-Ecto-sp6_S_contig110:273394..2734891682348802.9801931-CDS-Ecto-sp6_S_contig110:273394..273489Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 273395..273489 -
1682348802.9871747-CDS-Ecto-sp6_S_contig110:273955..2740421682348802.9871747-CDS-Ecto-sp6_S_contig110:273955..274042Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 273956..274042 -
1682348802.9944046-CDS-Ecto-sp6_S_contig110:274392..2744541682348802.9944046-CDS-Ecto-sp6_S_contig110:274392..274454Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 274393..274454 -
1682348803.0016966-CDS-Ecto-sp6_S_contig110:274878..2749871682348803.0016966-CDS-Ecto-sp6_S_contig110:274878..274987Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 274879..274987 -
1682348803.0088582-CDS-Ecto-sp6_S_contig110:275607..2756951682348803.0088582-CDS-Ecto-sp6_S_contig110:275607..275695Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 275608..275695 -
1682348803.015901-CDS-Ecto-sp6_S_contig110:276221..2763101682348803.015901-CDS-Ecto-sp6_S_contig110:276221..276310Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 276222..276310 -
1682348803.0229626-CDS-Ecto-sp6_S_contig110:277940..2779911682348803.0229626-CDS-Ecto-sp6_S_contig110:277940..277991Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 277941..277991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig110.1482.1

>prot_Ecto-sp6_S_contig110.1482.1 ID=prot_Ecto-sp6_S_contig110.1482.1|Name=mRNA_Ecto-sp6_S_contig110.1482.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=289bp
MTDNSTFGCLTSSHENLVRTYLKFVRAKRDIALRSMESEFDDINNDRLSE
DMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQGA
SLAFDTSTVEDQALLEEVERMRVDGAFRRQSGQASRLVSIKDEHARLAEE
TQTMQAQNEALEARVAGLQQDCAILLRERDEEKTEAANLRRKLRFKAPDK
SETPPKEVLGDKGAADVEAARQEISALQALNERRLNESPQFQELKKLVSS
KSKQVVSLRRRLLRYEPDDGDDAKQVEEADNVVAEGKD*
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mRNA from alignment at Ecto-sp6_S_contig110:271955..277991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig110.1482.1 ID=mRNA_Ecto-sp6_S_contig110.1482.1|Name=mRNA_Ecto-sp6_S_contig110.1482.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6037bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:271955..277991- (Ectocarpus species6 EcLAC_371)
ATGACTGACAATAGCACCTTCGGGTGTTTGACCTCCAGCCACGAGAATCT GGTGAGCGCCGCGATGTGTCAATAATTGCAGTAGGTCAGCGCCTCCTTGG GTTGTTCAGTGGTGCGCCACCATGCAGTGACCGGGGGAGAGGCGGCAGCC ACGTCTCTGTTTCCCGTAGACTACTTGTACATAAGTGCTGGTTTGGAAAA AATAACGGGTCAAACTGGATCATACGCACTACTTCCTACTGCTGTAGGGT GGCAACCTCATAGTGCCCGGCGAGAGGGGGGCAGCTCCCACGGAGGTCAC TGCCGAGCCTTGTTCCCCGAGCCCTAAGAATATCGTTCTGCATCAGATGG AGCAGCCCAAACACTCCACGTAGACGACTGCTCGTACACAGACAACAGTC GTATGGCTACTAATACGGCTGTACTCCTTGAGCGACGTAGACCCCGTACT TCGAAGTATAATGCAGTTGTACAGTAGTTGTCGCGTTTTGCCTACTCGCT CTGGAGGTATCGCAGGCGACTTCCCCCCACCTGAGACTGACCTCACGGGC ACATGCTAAACACGACAGCAGTGTATTGTCACAATTATTGAAGGCACGCC CCGTTTGGGGAAAGGCCGAGAGAAAAAAAAAAAAATACCTCCTCCAGTGT GACCTCGGGTGGTGCGCCGAACATACTGTTATCAAGAAATACACATAGAC TACGATCACTGCGAAACTCCCCGCTCGAAACATAGTCTAACCATAACATT CTGTGTACAATAGGCTGGGGCCCAGAATATATGGGGATGGAAATACAAAC ACATAGCACACACGACGACCTCCATATTCGCCTGCTGACACTGAAGTCTC TTCATTCGTCAGGCATTCAGCTCAGGGGATGCTGTTCAAAGAACACGCAC ATACTCATAATCTAGAGACTTCCATGCCTGGCGGATCCTGGACTTCCGGG TGGCTAAAATTTCACACCTCTCTCCCGCATGTTGGTATTCTCGCATCATG CAGAAGAGGGCGATACATGTCCTGAAGTTTGTTGCCCGTAGGTTTTGGCC ATCAGACCCGTTCCTCTGCCCGAGGCTCTCGTTGCGTTATTGTTGTTTTC ACGCTGAAAACCGCACCGATCCTGGGCGTTACTTTCTATCATCCGTACCG GTTCAAGCCGTGCCGATGCCTCCCGTAGACACAAGCTACCACCCCGACGA TGGGTACAAGTCGGAAAATATCTGAAGGAAATCAAACGGACCCAGGAAAA TCGCCATCAACGCGATATTAGAGTGGGTTTCAAAAGGTCCCAGACATACA GTCAGACGTCGCTAGTGACCTATCGGGCGCAGGAGATGAAAAATTACTGC TTCTAGCATATTGAACAGAACAGCCCCATTGCTTCCCGCTCGGGTGACCT ACCGATTGGTGATCGTACATCACCGGTACCTGTCTACCGTGCGCGGCTCT CGTGTGTAGACAATAATCTAGACCACGCGTGTTCTGGTGTTGCCCATGGA CATAGTCTATTGTTGATGGCAGTAAATTAAAAAAACACTGATGTTATGGT TAGTGGTGAAAGAGAAAACCGTTTTGTAGGGTTAGAGTCAAGAGGCGGAA AGGCAGGCGGGAACGTACAGACATGATATTGCTGCTGCATTCAACAAGGT GTGGCGCTAACCCATCTACCCCGCCCAAAAGGTACGCACCTATCTCAAGT TTGTCCGGGCGAAGCGAGACATTGCTCTGCGATCAATGGAGAGCGAGTTC GATGACATCAACAACGACAGGTGAACGGGAGTTTGAATTTTCTAGGAGCA AGGCGGCGGAATATTGTTACTGTACAGATCGTCCGGAGGGTAATCTAGAA ACGGTTGCAGACATCCTCTGCATCGAATCATGATCTTGGGCGGCCGCGGG TCTGTCGTTCTGTCCTCAAGTCATGCATGCATTCAGATGGAAAGCAAATC GTCGGCCGCGTCTCCATGTCGTAGAGCGGGCGTGGCGCGCTGTTCTACTC TGTCTGAAAACCCTGGGCCGTTGGCTTGTGAACGTACCTGTTCCATGTAC ACACGTGATCGTACGAGACGATGTCCCCAAACACGCGTAGTTGCACTTAG GGCCGCATGCACGTTCCGGGCGGCCTGGACAAGCATCAAAAATAGGTGCA GTAATAGACATCAGCCATCATCATGCTCGAGACGTGTAGCCGTATGGAGC GAAGGTGGGCTGTGTACGTTTATCCCGTTCTCCCCTACGTACAGCATCTT AACATCTTCCCGTAAATCTGCGCCTGCTTTCGATGCGCCCACCAAGGCTG TCGGAAGACATGTACAGCCAGCAAGACGTGGAAAGCATTCTAGATGGCTT GAGGGGCTGCGTGATCACAAACCTTCGTCAGGAGGTGGGGATTGGGTCAC GTCCCGCATGTCTACCGGGTTGAAACTGGTAGCCTTCAACACGTGAGAGT AACTATACAACCCGAAGAGATTGTGCGGCTAAGCATCGATGTGCAGCTTG CTCGGCCAATGAGATGCGGAAATTGTCGTAGAAAGCCTGAGGTAGTGCGT GGTCGCCCTTTGTGTTGCCTTCGCCTGGAGTACACACTCGTCTGAACTAC CGGAAAACGAGCAAGAGTACGAGGTTGTTCAGGACGGCGTGAATTGTGGC TCTGACTGTCATGCAAGTGTGCCCACTAAGCAACCGATGCTATTACGGTA GGTCAGGACCCGAACTGCTTGTAGATTCGTCCACTTCTTTTCTCGGTACG GTCCAGGTATGCCAGCCCTCTCCGTGGCACTGCGAACGCAAACAACAAAT ACAGCAGTTGCGTGCTGCGGGAAATCCTTCGTTAGACTACCAAAAAAACG AATGCAGCACCTAGGCGATTCTGGGGGCCCTGTGGTAGTCAGGTTTGCGT GGCCGGAGGGATACTAAAGCAAAAGTATGCAATTTTCCCGTCTAAGTGAA ACAGTAATGACGTGAGACCGATTTTGTCGGGGCGTCTTGGTTGTACGCAC GCAGGTAGGAGCGGTGGCAAACATGAGCGCCCTCTTGATGAAGCAGATGC TCGAGGATGCTGAGCAACAGGGAGCATCGCTGGCGTTCGACACCAGCACT GTTGAGGATCAAGGTACTCCCCTTTGCTTGTTCGCCAGTTGTACGGTAGA TACTTTCCATGATCTGCTGCGTTTTTCGTTTGCAATCGTGAGTACATGAG CAAGCCTCATCTACATAGCACTGATTGGTAATGGCGAACGGGAAAAGTAG TGTGGACCTTGATGTGGTGGTGCCCCCGCGAGAAATGTTTTGACCGGTTT TTCCTTGCATAAACACGACGGGTTAGGGTGGCAGCACCGGAAAAAGGGTG GGCAGAAGGAAAAAGGAAAGGATGAAGGAAAACGCACAAGGGAGGCAGAC ACTGTTTTTGCTGGTTGCTACAGCACGGGTGCTGTTCTCGTCGTTGATTC TAATTGGGTTAGTCTCACGAGGGCCAGCGTTACGCGCGTGGTGATTTTGA TGGGCCGCCTTCCGACTTGTGCATGTTTGAATTGCAGCCCTGTTGGAGGA GGTGGAGCGGATGCGTGTAGACGGAGCGTTCCGTCGCCAAAGTGGCCAGG TGAAGCACGGTTCACGACACTAACCCACCTGCTTGCTCTCCTGCTCGGTG CTTCGACAGCCAAAGTTGTTGTCGATGCTGATGTATTCTCCATAACCATA GTCATTCTGACCTTTACCCAGCGCCTTTGAGTGTACAATAGGCGACCATT GCTTTCCGCCGTCCGGAAGCTACCGCAGACTTATGAAGTAACCAATGCGA GGATGAGCTATTGATAACGCCGTTGCACGGTGGGGTAAAGTTAACGATTT TGCGTTACGCCATGGTCTTGACTACACAGTCCCAGACCGAAGAACCTCTC AGTGTGTCCACGTTTTGGGCTTTGCTTGTGGTTTGGGGCACGGCCGCAGG CCTCTCGCCTGGTCAGCATAAAGGACGAGCACGCCAGACTGGCAGAGGAG ACTCAGACCATGCAGGCACAGAACGAGGCTCTCGAGGTAAGCAACAGGGG GGGCTTGGTCGAGGTCTACTACGGTATGCGTGGTGGGACAGCAATCGGTG GTGCCTCCTGCTGGGGTTGAATTCAGTGCCTTTTTTTGCAGGTGCATGCA TTGTGGCCCAATCTCGTGTGTTTGTCATTCTTAGGAGGCTGGATAGCATA CTCGAGCCATAAAAGCCAGTGCCTGAGAAGAAAACAGTAATGGTTGACAC CGATACCGTGGAAGAGTATCGGTTAGCACCACTCAGGCTGCCGACTCCCA CGCATTGCGTCTACCACATAGAATAGAGAGAATACTGATGACCGGCTGTG CTCCCTGGGCGTAGACGCCGTGCAGAGCGTTTGAATCCCACGTTATGTTG GTCCAAATACTTGATCCACTGACTGCCCACAGATCGGTTTCGATATCGCA TCCTTCGTGATTGATAGTTGCCTTTTCCTGCCATGTTATGCATGTGGTGC AGGCGCGTGTGGCCGGGCTTCAGCAAGACTGTGCGATCTTGTTGAGGGAA AGAGACGAAGAGAAAACCGAGGCCGCAAATCTCCGACGCAAGCTCAGGTG CAGGCTCACGCTTCATTTAATCGTTCTTTTCAACCACGATTTGCTGTTGT TTTTCATTTTATCGTCAGAGCATGAATGTCACCCTCTGGAGGTTTTGCCT TCCATTACATTCACATGGGTATGTCGTGAGCAGTAGTAGCCATGCTCGGA CTCAGGCAACGAAGATGCCTGCTCTGTGTCAACGGTGAGCGTAAGCGATT CCGACTCTGCGGCGCTTGGTGCAATCCGCCAAACCAGACCATACATCCAT TGGCGGTCGGTTGTTCAGGTTCAAGGCTCCGGACAAGAGCGAAACGCCCC CGAAGGAGGTGTTGGGGGACAAGGGGGCCGCGGATGTGGAAGCCGCACGC CAGGAGATATCCGCGCTTCAGGTCTGCGTTTCGGGGTGGTGTTGCAGCAG TGGGTGTGCCTTTCGTGGTCATACGCAAACAATTCCTGACAGCAGACTAA TGGTGAACGGATTGATCATCAGGTTTTAGCACCTGCGAATGAATGAATAT CGAAGCACGAGCCAAAACTATCGACAACTTGAACGCCATGTGAGGGGAGA TGCATGTGACGCCATAGCGGGCAGCTCCCCCGGGTGTGGGACTCACAAAA ATCACGACAGGAGAGGTTACCTCGCTACACTACGCAGGAGGTCGTCTCTC CGAACGAAACCGATGGGAAAAGGTTTCTGTCTTGTAGCATGACCCCTGGT TTCTCCTGATTTCTCCCTGGGACGAAACGGTCGGGGTTTCGTCTCTTCTG TAACTGTGACACACCAGGGTAGAGCTTGGTGCGTGATCAGGAGATCATAG GAAGCCCAGTGGCGCTCGGAATAGCGGCGATGTTTACTTGGATGATATGC TGAAACAGAAAATAGTAGGGATAGCGATTCATTGATGATGTGAGGGCTGT GTTGATCTCTGCTCACGGAAACAAACACGTACGTCGTGCCGCAATCCACC AGGCTTTAAATGAAAGACGACTGAACGAGTCTCCGCAGTTCCAGGAGCTC AAGAAACTTGTCTCCTCCAAGAGTAAACAGGTGAGAACAAAGCCATGGAC AAGAAAAAAACCCTCACTACCCCTCATTTGCTTCCCATACAGACTTCCCA TACAGAAAAATGAACCAAAATTGCACAAGTAATCTGATGTCCACACAACA ACACACCCCGGTAGTGTGCGATCATTCAACTGAACCTTCGCGAGCGTAAC GAAATCTTCGATTTCTACGTATATCGTATATCAGCCCAAATTTATTTCCC CGCATTGTGCAATCCACGAACGAACCCAATCATTGCCGTGCCGCGGATAC CTGTTTCCTCACGACGCGTACGTATGTGACAGGTGGTGTCCTTAAGGAGA AGGCTTTTGCGGTACGAGCCAGACGATGGCGATGACGCCAAGCAAGTAGA GGAAGCCGATAACGTGGTCGCCGAGGGCAAAGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:271955..277991-

>mRNA_Ecto-sp6_S_contig110.1482.1 ID=mRNA_Ecto-sp6_S_contig110.1482.1|Name=mRNA_Ecto-sp6_S_contig110.1482.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:271955..277991- (Ectocarpus species6 EcLAC_371)
ATGACTGACAATAGCACCTTCGGGTGTTTGACCTCCAGCCACGAGAATCT
GGTACGCACCTATCTCAAGTTTGTCCGGGCGAAGCGAGACATTGCTCTGC
GATCAATGGAGAGCGAGTTCGATGACATCAACAACGACAGGCTGTCGGAA
GACATGTACAGCCAGCAAGACGTGGAAAGCATTCTAGATGGCTTGAGGGG
CTGCGTGATCACAAACCTTCGTCAGGAGGTAGGAGCGGTGGCAAACATGA
GCGCCCTCTTGATGAAGCAGATGCTCGAGGATGCTGAGCAACAGGGAGCA
TCGCTGGCGTTCGACACCAGCACTGTTGAGGATCAAGCCCTGTTGGAGGA
GGTGGAGCGGATGCGTGTAGACGGAGCGTTCCGTCGCCAAAGTGGCCAGG
CCTCTCGCCTGGTCAGCATAAAGGACGAGCACGCCAGACTGGCAGAGGAG
ACTCAGACCATGCAGGCACAGAACGAGGCTCTCGAGGCGCGTGTGGCCGG
GCTTCAGCAAGACTGTGCGATCTTGTTGAGGGAAAGAGACGAAGAGAAAA
CCGAGGCCGCAAATCTCCGACGCAAGCTCAGGTTCAAGGCTCCGGACAAG
AGCGAAACGCCCCCGAAGGAGGTGTTGGGGGACAAGGGGGCCGCGGATGT
GGAAGCCGCACGCCAGGAGATATCCGCGCTTCAGGCTTTAAATGAAAGAC
GACTGAACGAGTCTCCGCAGTTCCAGGAGCTCAAGAAACTTGTCTCCTCC
AAGAGTAAACAGGTGGTGTCCTTAAGGAGAAGGCTTTTGCGGTACGAGCC
AGACGATGGCGATGACGCCAAGCAAGTAGAGGAAGCCGATAACGTGGTCG
CCGAGGGCAAAGATTGA
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