mRNA_Ecto-sp6_S_contig110.1473.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig110.1473.1 vs. uniprot
Match: A0A6H5JG15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG15_9PHAE) HSP 1 Score: 1323 bits (3424), Expect = 0.000e+0 Identity = 990/1218 (81.28%), Postives = 1018/1218 (83.58%), Query Frame = 1
Query: 1 MAAAVGTSCIPPPVSAGNPAAGTAADAGPEGXXXXXXXXXXXXXXXXXXXXXTALKGEGDCNGFNVNQQPPSATANGVGAAGGEAEVLRPEAGSSIAXXXXXXXXXNTASRRGSGDSEDRGDVADTCAPQTSAAVRPADGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTPTARGRTLVSLQLQKEELLPPPVLPPSACTTPAESPRNPDLVMDAFRSPAASPWPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SVDAFCVSPFSPRVSPRALMSSPVGIDGPARDGSFSLSSSPSSQRGAFAGSGRLEGSDWWKGLDLSPDRCGLPRWRESRKPVATASFLPSDDVSENDGGGETVVEMSSVSVAAGFHDGXXXXXGLLSPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGRATGEVSATEQAFQPLTLEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPADANSSNN--------AGTAVVASADDKSNASACRVKVEATGAAKTVKAAATAAT----SPRSRGVEGEGGGEAGAGMVNDGPLLSPRGRGYLARLVLEVCSEIEDSKKKAATEAKGKGGASTSAVTTRGEGITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLVGEPKTPARGDGSALRRTSSGSS--IKVVRTASAWDATPMIKMFTGGKPGKKAXXXXXXXATPHKNARETPLRTPRSGGAGGFFGAGDWLAAAFTPRGALAPDPDSPRAPASEVPKQXXXXXXXXXXXXXXXXVEQDEGIAPLAPSQPLSSSRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTERKVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESRLEESLRIQHSGGSNXXXXXXXXXXXXXXXXXXXXXXXXXXGELSLGNGSTSGKDENKXXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPGAASVPEILTAVARARGSGRKRR 3603
MAA VGTSCIPPPVS GNP AGTAADAGPEG A+ G GDCNGFNV QQPPSA ANGVG AG AEVLR EAGSSI XXXXXXXXX CA T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTPTA GRTLVSLQL+KEELLPPPVLPPSACTTPAESPRNPDLVMDAFRSP+ASPWPAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX SVDAFCVSP SPRVSPRALMSSPVGIDGPARDGSFSLSSSPSSQRGAFAGSGRLEGSDWWKGLDLSPDRCGLPRWRESRKP+A AS LPSD +E DGGG+T V M++ + A G HDG GL+SPT XXXXXXXXXXXXXXXXXXGVPGR EVSATEQAFQPLT+EGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPM ADANSS+N AGTAVVASA D SNAS CRVKVEATGAAKTVKAAA SP+SRGVEG+GGGEAGAGMVNDGPLLSPRGRGYLARLVLEVCSEIEDSKK AATEAK KGGAST+ V+TRGEGITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASER SGM+MSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRL+GEPKTPARGDGSALRRTSSGSS IKVVRTAS WDATPM K+ TGGK GKKA ATPH+NARETPL+TPRSGGAGGFFGAGDWLAAAFTPRGALAPDP+SPRAPASEVPKQXXXXXXXXXX VE+DEGIAPLAP+QP+SS RPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTER+VEEGGEEDVRHLT+ELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAES LEESLR+QHSGGSN XXXXXXXXXXXXXXXXX XXXXXXXXXXX EEEEANRTIAML GTAEFLKFSRLLLLLSEAISVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAPGAA PEILTAVARARGSGRKRR
Sbjct: 1 MAAVVGTSCIPPPVSTGNPTAGTAADAGPEGGGGPSTPSA------------AAVNGGGDCNGFNVKQQPPSAAANGVGTAGRGAEVLRREAGSSIXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XCA--TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTPTALGRTLVSLQLKKEELLPPPVLPPSACTTPAESPRNPDLVMDAFRSPSASPWPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRKSAWRPRXXXXXXXXXXSVDAFCVSPISPRVSPRALMSSPVGIDGPARDGSFSLSSSPSSQRGAFAGSGRLEGSDWWKGLDLSPDRCGLPRWRESRKPLAVASSLPSDIGTEKDGGGKTAVGMTAGAAATGLHDGGDGVRGLVSPTSSSSARMSRSYMTLXXXXXXXXXXXXXXXXXXGVPGRGAAEVSATEQAFQPLTVEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMIADANSSSNTESCRTGNAGTAVVASAGDNSNASPCRVKVEATGAAKTVKAAAAXXXXXXXSPKSRGVEGQGGGEAGAGMVNDGPLLSPRGRGYLARLVLEVCSEIEDSKK-AATEAKAKGGASTNTVSTRGEGITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERSSGMSMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLMGEPKTPARGDGSALRRTSSGSSGSIKVVRTASPWDATPMKKILTGGKQGKKAAAAAA--ATPHRNARETPLKTPRSGGAGGFFGAGDWLAAAFTPRGALAPDPESPRAPASEVPKQXXXXXXXXXX------VEKDEGIAPLAPAQPISSFRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTERRVEEGGEEDVRHLTQELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESVLEESLRLQHSGGSNSKSSRGCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXEEEEANRTIAMLEGTAEFLKFSRLLLLLSEAISVSNSVTSTNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VAPGAAGAPEILTAVARARGSGRKRR 1191
BLAST of mRNA_Ecto-sp6_S_contig110.1473.1 vs. uniprot
Match: D7G4K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K0_ECTSI) HSP 1 Score: 1131 bits (2926), Expect = 0.000e+0 Identity = 838/995 (84.22%), Postives = 846/995 (85.03%), Query Frame = 1
Query: 664 MDAFRSPAASPWPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDAFCVSPFSPRVSPRALMSSPVGIDGPARDGSFSLSSSPSSQRGAFAGSGRLEGSDWWKGLDLSPDRCGLPRWRESRKPVATASFLPSDDVSENDGGGETVVEMSSVSVAAGFHDGXXXXXGLLSPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGRATGEVSATEQAFQPLTLEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPADANSSNNA--------GTAVVASADDKSNASACRVKVEATGAAKTVKAAATAATS---PRSRGVEGEGGGEAGAGMVNDGPLLSPRGRGYLARLVLEVCSEIEDSKKKAATEAKGKGGASTSAVTTR---GEGITSRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLVGEPKTPARGDGSALRRTSSGSSIKVVRTASAWDATPMIKMFTGGKPGKKAXXXXXXX-ATPHKNARETPLRTPRSGGAGGFFGAGDWLAAAFTPRGALAPDPDSPRAPASEVPKQXXXXXXXXXXXXXXXXVEQDEGIAPLAPSQPLSSSRPPPEADALSFEGSTEEVLRYTIVAKSYLIRSKSKKHGESREASPIKSLFSPGGTERKVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVNDEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESRLEESLRIQHSGGSNXXXXXXXXXXXXXXXXXXXXXXXXXXGELSLGNGSTSGKDENKXXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPGAASVPEILTAVARARGSGRKRR 3603
MDAFRSPAASPWPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SVDAFCVSPFSPRVSPRALMSSPVGIDGPARDGSFSLSSSPSSQRGAFAGSGRLEGSDWWKGLDLSPDRCGLPRWRESRKPVATASFLPSDDV+ENDGGGETVVEM+SVS AAGFHDGXX GLLSPTR XXXXXXXXXXXXXXXXXXXXGVPGRATGEVSATEQA QPLT+EGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPAD NSS+NA GTAVVASADDKSNASACRVKVEATGAAKTVKAA P+SRGVEGEGGGEAGAG+VNDGPLLSPRGRGYLARLVLEVCSEIEDSKK AATEAK GEGI SRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLVGEPKTPARGDGSALRRTSSGSSIKVVRTASAWDATPMIKMFTGGKPGKKAXXXXXXX ATPHKNARETPLRTPRSGGAGGFFGAGDWLAAAFTPRGALAPDPD RAP P++ PS P SYLIRSKSKKHGESREASPIKSLFSPGGTERKVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVN EELRMIRAQVFEAIQRKRSELHTEAAAVLRAESRLEESLRIQHSGGSN XXXXXXXXXXXXXXXXXXX STSGKDE XXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAPGAA VPEILTAVARARGSGRKRR
Sbjct: 1 MDAFRSPAASPWPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG---SVDAFCVSPFSPRVSPRALMSSPVGIDGPARDGSFSLSSSPSSQRGAFAGSGRLEGSDWWKGLDLSPDRCGLPRWRESRKPVATASFLPSDDVTENDGGGETVVEMTSVSAAAGFHDGXXGVRGLLSPTRSSSARMSRSYMXXXXXXXXXXXXXXXXXXXXGVPGRATGEVSATEQASQPLTVEGRLRQLEAENLRLRFRVADLEGQVSVMEDELDRRGVARPMPADPNSSSNAESCRTGNAGTAVVASADDKSNASACRVKVEATGAAKTVKAAXXXXXXXXXPKSRGVEGEGGGEAGAGIVNDGPLLSPRGRGYLARLVLEVCSEIEDSKK-AATEAKXXXXXXXXXXXXXXXXGEGIASRPRSIPHSERLCKVLPKVMETAIRGVKDLDEQVFEQMMRTASERGSGMAMSMSSLSSPAHGGSLPLGTPARRLSSCVVARDGGGEFFAQSPAPGRPASFFRLVGEPKTPARGDGSALRRTSSGSSIKVVRTASAWDATPMIKMFTGGKPGKKAXXXXXXXXATPHKNARETPLRTPRSGGAGGFFGAGDWLAAAFTPRGALAPDPD--RAP----PRRFFG-----------------------TPSLP------------------------------SYLIRSKSKKHGESREASPIKSLFSPGGTERKVEEGGEEDVRHLTKELLDLKSRYMASTQHWLKTDIVNHEELRMIRAQVFEAIQRKRSELHTEAAAVLRAESRLEESLRIQHSGGSNSKSSRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSGKDEXXXXXXXXXXXXXLREEEEANRTIAMLAGTAEFLKFSRLLLLLSEAISVSNSVTSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VAPGAAGVPEILTAVARARGSGRKRR 931 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig110.1473.1 >prot_Ecto-sp6_S_contig110.1473.1 ID=prot_Ecto-sp6_S_contig110.1473.1|Name=mRNA_Ecto-sp6_S_contig110.1473.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1202bp MAAAVGTSCIPPPVSAGNPAAGTAADAGPEGGGGPSTPSAAAAAAAAAAAback to top mRNA from alignment at Ecto-sp6_S_contig110:189186..201698+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig110.1473.1 ID=mRNA_Ecto-sp6_S_contig110.1473.1|Name=mRNA_Ecto-sp6_S_contig110.1473.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=12513bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:189186..201698+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:189186..201698+ >mRNA_Ecto-sp6_S_contig110.1473.1 ID=mRNA_Ecto-sp6_S_contig110.1473.1|Name=mRNA_Ecto-sp6_S_contig110.1473.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3606bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:189186..201698+ (Ectocarpus species6 EcLAC_371)back to top |