mRNA_Ecto-sp6_S_contig11.1281.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1281.1
Unique NamemRNA_Ecto-sp6_S_contig11.1281.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1281.1 vs. uniprot
Match: D8LAX9_ECTSI (NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX9_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 9.320e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = -2 
Query:   48 AGVALDREEAFRVANLLQRCGFLSWVAKEQQWLVTVPADVEVLRRRRDETMMEELLTRCQEAGVPFEPTLAANLLWSKARR 290
            AGVALDREEAFRVANLLQRCGFLSWVAKEQQWLVTVPADVEVLRRRRDETMMEELLTRCQEAGVPFEPTLAANLLWSKARR
Sbjct:  273 AGVALDREEAFRVANLLQRCGFLSWVAKEQQWLVTVPADVEVLRRRRDETMMEELLTRCQEAGVPFEPTLAANLLWSKARR 353
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BLAST of mRNA_Ecto-sp6_S_contig11.1281.1 vs. uniprot
Match: A0A6H5JRN4_9PHAE (NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN4_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.250e-46
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = -2 
Query:   48 AGVALDREEAFRVANLLQRCGFLSWVAKEQQWLVTVPADVEVLRRRRDETMMEELLTRCQEAGVPFEPTLAANLLWSKARR 290
            AGVALDREEAFRVANLLQRCGFLSWVAKEQQWLVTVPADVEVLRRRRDETMMEELLTRCQEAGVPFEPTLAANLLWSKARR
Sbjct:  556 AGVALDREEAFRVANLLQRCGFLSWVAKEQQWLVTVPADVEVLRRRRDETMMEELLTRCQEAGVPFEPTLAANLLWSKARR 636
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX9_ECTSI9.320e-49100.00NYN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRN4_9PHAE1.250e-46100.00NYN domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:987286..987590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size305
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348772.571062-CDS-Ecto-sp6_S_contig11:987285..9875881682348772.571062-CDS-Ecto-sp6_S_contig11:987285..987588Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 987286..987588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1281.1prot_Ecto-sp6_S_contig11.1281.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 987286..987588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1281.1

>prot_Ecto-sp6_S_contig11.1281.1 ID=prot_Ecto-sp6_S_contig11.1281.1|Name=mRNA_Ecto-sp6_S_contig11.1281.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=101bp
VVFRITHEAAETILGYRRALDQSKLAARVGSKGTPASWHLVSSSSIMVSS
LLLRSTSTSAGTVTSHCCSFATHDRNPQRCRRLATRNASSRSRATPAPPL
P
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mRNA from alignment at Ecto-sp6_S_contig11:987286..987590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1281.1 ID=mRNA_Ecto-sp6_S_contig11.1281.1|Name=mRNA_Ecto-sp6_S_contig11.1281.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=305bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:987286..987590+ (Ectocarpus species6 EcLAC_371)
GTGGTATTCCGCATCACTCATGAAGCAGCAGAGACTATTCTTGGTTACCG
TCGCGCCTTGGACCAAAGCAAGTTGGCCGCCAGGGTGGGCTCGAAAGGGA
CCCCCGCCTCCTGGCACCTGGTGAGCAGCTCCTCCATCATGGTCTCATCC
CTCCTCCTCCGCAGCACCTCCACGTCCGCCGGCACGGTCACCAGCCACTG
CTGCTCCTTCGCCACCCACGACAGGAACCCGCAACGCTGCAGGAGGTTGG
CCACCCGAAACGCCTCCTCGCGGTCGAGGGCCACACCCGCCCCCCCGCTG
CCGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:987286..987590+

>mRNA_Ecto-sp6_S_contig11.1281.1 ID=mRNA_Ecto-sp6_S_contig11.1281.1|Name=mRNA_Ecto-sp6_S_contig11.1281.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:987286..987590+ (Ectocarpus species6 EcLAC_371)
GTGGTATTCCGCATCACTCATGAAGCAGCAGAGACTATTCTTGGTTACCG
TCGCGCCTTGGACCAAAGCAAGTTGGCCGCCAGGGTGGGCTCGAAAGGGA
CCCCCGCCTCCTGGCACCTGGTGAGCAGCTCCTCCATCATGGTCTCATCC
CTCCTCCTCCGCAGCACCTCCACGTCCGCCGGCACGGTCACCAGCCACTG
CTGCTCCTTCGCCACCCACGACAGGAACCCGCAACGCTGCAGGAGGTTGG
CCACCCGAAACGCCTCCTCGCGGTCGAGGGCCACACCCGCCCCCCCGCTG
CCG
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