mRNA_Ecto-sp6_S_contig11.1280.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 926 bits (2392), Expect = 0.000e+0 Identity = 483/543 (88.95%), Postives = 489/543 (90.06%), Query Frame = 1
Query: 34 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVSPPPPMARPTPAAGPDRFTFEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGAGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGTGADLQEMELVRRIRSFRQRR 1662
MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE VYHKIPTALLLGGCARGSPEDLLLA+RPLSDRLGDPGCVETRLV FRLE HISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDE+GLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCR A+TGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGV MA+PTPAAGPDRFT EGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWG GGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEG GADL+EMELVRRI+SFRQRR
Sbjct: 1 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE-------------------------------------------VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 500
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 898 bits (2321), Expect = 0.000e+0 Identity = 506/555 (91.17%), Postives = 513/555 (92.43%), Query Frame = 1
Query: 1 MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXX-AVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVSPPPPMARPTPAAGPDRFTFEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGAGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGTGADLQEMELVRRIRSFRQRR 1662
MMVRG PTAV MGAVAG EAA +RPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXX AV SVAD+TIDDHPSVYHKIPTALLLGGCARG PEDLLLARR LSDRLGDPGCVETRLVAFRLE HISAEEFAGRLGECRGQASPAAIAALC AVESAVSDN RISTPTVDVFVRENLFPDAISSSQERLAAAA DEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELP LSLEELSRRNVCR A TGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASG VHSQ SPPRRR GNGSWE+NTRRRVGGGG ADTSA+SGGGIG SEGVVRGRDGAWDNRGGS TWFHD+AS RT RREATSH V PPPPMARP PAAGPDRFT GADRRRYE TGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTG GAGGP GVPPTVMFGNEWGRKREWRRTGYTDDDIDP MGSCFFRTPANSTGVLRRSDLGEGTGADL+EMELVRRI+S RQRR
Sbjct: 260 MMVRGGPTAVRMGAVAGPEAAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGRVHSQPSPPRRR----------GNGSWEKNTRRRVGGGGRADTSAHSGGGIGSSEGVVRGRDGAWDNRGGSETWFHDQASGRTMRREATSHSVPPPPPMARPIPAAGPDRFTL-GADRRRYEYTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGGGAGGPEGVPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQRR 803
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.520e-52 Identity = 129/305 (42.30%), Postives = 167/305 (54.75%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGR-LGECR------GQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSP 972
LL+TIGPQCAGKT+ L AL A + D+ IDDHP VY+K+PTA L + +D+LL + +S+R+ D V LVA RLE ++A+EF + L G+ IAA VE+AV+ +R+ TPTVD+FV +P + S RL + G VAWGNTNT+++DYR ALE A+ RPVR+LRWGHELP + L +L R++ R A TGRYV A+ AL RV+ LYA T GGDPA L AAGFQM A V + S P
Sbjct: 94 LLITIGPQCAGKTTTLLALGQSLGGAR-----------------------------ICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAA----VEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAAGFQMGAGARVRAVSRP 365
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.210e-45 Identity = 118/301 (39.20%), Postives = 158/301 (52.49%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIA------ALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQ 963
LL+TIGPQCAGKT+ LR + V D+ ID+HP VY+++PTA +L + + ED+ + R LSDRL G LVA RLE +S+ +F E + A P +A +VE+AV++ VR+ PTVD+F+ E P + L G VAWGNTNT+ARDY AL A+ RPV F+R+GHE+P +S+ EL RN+ R A TGR++ + A RV LYA T GG+PARLA AAGF MD G V ++
Sbjct: 71 LLITIGPQCAGKTTTLRKM------------------------------------GVFDVAIDEHPDVYYELPTAYILDPTST-TLEDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEA---EWKAIAGPYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAAGFIMDDEGRVRAE 331
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.660e-14 Identity = 86/299 (28.76%), Postives = 120/299 (40.13%), Query Frame = 1
Query: 73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPE-------DLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRL---------------------GECRGQASP---AAIAALCRAVESAVSDNVRISTPTV---------DVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRLAHTGRYVETAAI 846
P+LL+T+GPQCAGKT+LL+ L + P + D+ IDD +Y +P L L G D L+ R LS R D VE+RLV L E L C + + AL +A + ++ ++ T +F+ + L P AI S +RL + G VAWGNTN++ARD++ A+ A + GR V F+RWG EL + EEL RNV R G+YV I
Sbjct: 87 PSLLITVGPQCAGKTTLLKHLNESRPSF---------------------------APPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKA-RATIATTTKVDTVATWSPPAASHYQLFLPD-LLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTI 355
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 6.340e-12 Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 583 NLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAG 894
+L P AI S +RL+ + G VAWGNTN++ARD++ A+ A + GR VRFLRWG EL + EEL RNV R G+YV AI AL R L AG
Sbjct: 102 DLLPQAIRRSYQRLSRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVLLDGRAG 205
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A7S2IEC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEC1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.560e-9 Identity = 86/339 (25.37%), Postives = 127/339 (37.46%), Query Frame = 1
Query: 73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPE---DLLLARR----PLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAA------------------------------LCRAVESAVSDN---------------------------VRISTPT-------VDVFVRENLF-------PDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHE-----------LPFLSLEELSRRNVCRLAHTG 822
P + +TIGPQCAGKT+LL L P++ DITIDD VY KIPT+ L SP+ D L ++ LS R+ D E RLV RL I A EF L + + A + + ++N ++ TPT V +F++E +F P A+ +S +L+ + + VAWGNTNT+ R+Y+ AL+ A + PV F+ + + LP L+++ L +RN+ RL TG
Sbjct: 107 PPIYITIGPQCAGKTTLLSTL-----------------------------------PNLTDITIDDQEGVYIKIPTSYFLTNSPPPSPKQEPDPFLQQKILGKSLSHRIYDESNTEMRLVLQRLHNVIDATEFENLLLKDKRMEYEALLQEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRTNNNKHTHQKRQDQIHKLQTELTTLTHLLTTLQHPTPTTTPLPNEVSLFIQEAIFRPRTPTTPSALDTSITQLSTLS--QHHPVAWGNTNTRPREYKTALQAASTSSNPVHFIMYDSQSLLLPSETELTLPKLNIQTLLQRNIKRLLTTG 408
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A0L0D2W0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2W0_THETB) HSP 1 Score: 59.7 bits (143), Expect = 3.400e-6 Identity = 76/283 (26.86%), Postives = 116/283 (40.99%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAI-ENALARVDKLYASTAGGDPARLALAA 924
L++T+GP CAGK+++L AK E P+ D+ IDD P +Y +IP A L L +DR D E +A RLE ++ + + R R A AI + R R+++ + R L A++ +Q L A LVAWGNTNT+ A+ A+ G + + + + +EL +R+V R+ TG+ V AI ++A+A L + D A LA AA
Sbjct: 20 LVITVGPPCAGKSTVL----AKRE------------------------------PAPLDVCIDDSPGLYARIPWADLPATSQAAIVRAAALLEGGSNDRDDD----EEDALAARLEATVAIRDDSERRACARALAR--AIGYVRRKYPRLAEQEARLASEAQVLQTR--LMRKAVAWAQTALGEAMAAGVPLVAWGNTNTKMPAIAHAVALADEHGYAIEVV----NMTDVDFDELVKRSVLRMLKTGKVVPVEAIYKSAVAAQRSLVETGLVFDAAALAEAA 256
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A7S1Z518_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z518_TRICV) HSP 1 Score: 55.1 bits (131), Expect = 7.480e-6 Identity = 41/94 (43.62%), Postives = 50/94 (53.19%), Query Frame = 1
Query: 664 GNTNTQARDYRGALEQAERTGRPVRFLRW--GHEL------------------PFLS---LEELSRRNVCRLAHTGRYVETAAIENALARVDKL 876
GNTNT+ R+Y ALE AE +GRPVRFL G EL FL+ LE L R++ RL TGRYV + AI A+ R D+L
Sbjct: 1 GNTNTRPREYVTALEAAEASGRPVRFLPHMRGDELGIRLEGGXXXXXXXXXAEDFLAPVDLETLLHRSIKRLVETGRYVPSRAIGEAVVRCDQL 94 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig11.1280.1 >prot_Ecto-sp6_S_contig11.1280.1 ID=prot_Ecto-sp6_S_contig11.1280.1|Name=mRNA_Ecto-sp6_S_contig11.1280.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=555bp MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEback to top mRNA from alignment at Ecto-sp6_S_contig11:978528..982154+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig11.1280.1 ID=mRNA_Ecto-sp6_S_contig11.1280.1|Name=mRNA_Ecto-sp6_S_contig11.1280.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3627bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:978528..982154+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:978528..982154+ >mRNA_Ecto-sp6_S_contig11.1280.1 ID=mRNA_Ecto-sp6_S_contig11.1280.1|Name=mRNA_Ecto-sp6_S_contig11.1280.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1665bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:978528..982154+ (Ectocarpus species6 EcLAC_371)back to top |