mRNA_Ecto-sp6_S_contig11.1280.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1280.1
Unique NamemRNA_Ecto-sp6_S_contig11.1280.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI)

HSP 1 Score: 926 bits (2392), Expect = 0.000e+0
Identity = 483/543 (88.95%), Postives = 489/543 (90.06%), Query Frame = 1
Query:   34 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVSPPPPMARPTPAAGPDRFTFEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGAGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGTGADLQEMELVRRIRSFRQRR 1662
            MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE                                           VYHKIPTALLLGGCARGSPEDLLLA+RPLSDRLGDPGCVETRLV FRLE HISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDE+GLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCR A+TGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGV     MA+PTPAAGPDRFT EGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWG GGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEG GADL+EMELVRRI+SFRQRR
Sbjct:    1 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE-------------------------------------------VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 500          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE)

HSP 1 Score: 898 bits (2321), Expect = 0.000e+0
Identity = 506/555 (91.17%), Postives = 513/555 (92.43%), Query Frame = 1
Query:    1 MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXX-AVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVSPPPPMARPTPAAGPDRFTFEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGAGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGTGADLQEMELVRRIRSFRQRR 1662
            MMVRG PTAV MGAVAG EAA +RPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXX AV SVAD+TIDDHPSVYHKIPTALLLGGCARG PEDLLLARR LSDRLGDPGCVETRLVAFRLE HISAEEFAGRLGECRGQASPAAIAALC AVESAVSDN RISTPTVDVFVRENLFPDAISSSQERLAAAA DEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELP LSLEELSRRNVCR A TGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASG VHSQ SPPRRR          GNGSWE+NTRRRVGGGG ADTSA+SGGGIG SEGVVRGRDGAWDNRGGS TWFHD+AS RT RREATSH V PPPPMARP PAAGPDRFT  GADRRRYE TGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTG GAGGP GVPPTVMFGNEWGRKREWRRTGYTDDDIDP MGSCFFRTPANSTGVLRRSDLGEGTGADL+EMELVRRI+S RQRR
Sbjct:  260 MMVRGGPTAVRMGAVAGPEAAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGRVHSQPSPPRRR----------GNGSWEKNTRRRVGGGGRADTSAHSGGGIGSSEGVVRGRDGAWDNRGGSETWFHDQASGRTMRREATSHSVPPPPPMARPIPAAGPDRFTL-GADRRRYEYTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGGGAGGPEGVPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQRR 803          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.520e-52
Identity = 129/305 (42.30%), Postives = 167/305 (54.75%), Query Frame = 1
Query:   79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGR-LGECR------GQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSP 972
            LL+TIGPQCAGKT+ L AL      A                              + D+ IDDHP VY+K+PTA  L   +    +D+LL  + +S+R+ D   V   LVA RLE  ++A+EF  + L          G+     IAA    VE+AV+  +R+ TPTVD+FV    +P  +  S  RL    +   G VAWGNTNT+++DYR ALE A+   RPVR+LRWGHELP + L +L  R++ R A TGRYV   A+  AL RV+ LYA T GGDPA L  AAGFQM A   V + S P
Sbjct:   94 LLITIGPQCAGKTTTLLALGQSLGGAR-----------------------------ICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAA----VEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAAGFQMGAGARVRAVSRP 365          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.210e-45
Identity = 118/301 (39.20%), Postives = 158/301 (52.49%), Query Frame = 1
Query:   79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIA------ALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQ 963
            LL+TIGPQCAGKT+ LR +                                     V D+ ID+HP VY+++PTA +L   +  + ED+ +  R LSDRL   G     LVA RLE  +S+ +F     E +  A P  +A          +VE+AV++ VR+  PTVD+F+ E   P  +      L        G VAWGNTNT+ARDY  AL  A+   RPV F+R+GHE+P +S+ EL  RN+ R A TGR++    +  A  RV  LYA T GG+PARLA AAGF MD  G V ++
Sbjct:   71 LLITIGPQCAGKTTTLRKM------------------------------------GVFDVAIDEHPDVYYELPTAYILDPTST-TLEDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEA---EWKAIAGPYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAAGFIMDDEGRVRAE 331          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.660e-14
Identity = 86/299 (28.76%), Postives = 120/299 (40.13%), Query Frame = 1
Query:   73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPE-------DLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRL---------------------GECRGQASP---AAIAALCRAVESAVSDNVRISTPTV---------DVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRLAHTGRYVETAAI 846
            P+LL+T+GPQCAGKT+LL+ L     +                             P + D+ IDD   +Y  +P  L L G              D L+  R LS R  D   VE+RLV   L      E     L                       C  +        + AL +A  + ++   ++ T             +F+ + L P AI  S +RL  +     G VAWGNTN++ARD++ A+  A + GR V F+RWG EL   +  EEL  RNV R    G+YV    I
Sbjct:   87 PSLLITVGPQCAGKTTLLKHLNESRPSF---------------------------APPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKA-RATIATTTKVDTVATWSPPAASHYQLFLPD-LLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTI 355          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.340e-12
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  583 NLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAG 894
            +L P AI  S +RL+ +     G VAWGNTN++ARD++ A+  A + GR VRFLRWG EL   +  EEL  RNV R    G+YV   AI  AL R   L    AG
Sbjct:  102 DLLPQAIRRSYQRLSRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVLLDGRAG 205          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A7S2IEC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEC1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.560e-9
Identity = 86/339 (25.37%), Postives = 127/339 (37.46%), Query Frame = 1
Query:   73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPE---DLLLARR----PLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAA------------------------------LCRAVESAVSDN---------------------------VRISTPT-------VDVFVRENLF-------PDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHE-----------LPFLSLEELSRRNVCRLAHTG 822
            P + +TIGPQCAGKT+LL  L                                   P++ DITIDD   VY KIPT+  L      SP+   D  L ++     LS R+ D    E RLV  RL   I A EF   L + +     A +                                     +   ++N                           ++  TPT       V +F++E +F       P A+ +S  +L+  +  +   VAWGNTNT+ R+Y+ AL+ A  +  PV F+ +  +           LP L+++ L +RN+ RL  TG
Sbjct:  107 PPIYITIGPQCAGKTTLLSTL-----------------------------------PNLTDITIDDQEGVYIKIPTSYFLTNSPPPSPKQEPDPFLQQKILGKSLSHRIYDESNTEMRLVLQRLHNVIDATEFENLLLKDKRMEYEALLQEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRTNNNKHTHQKRQDQIHKLQTELTTLTHLLTTLQHPTPTTTPLPNEVSLFIQEAIFRPRTPTTPSALDTSITQLSTLS--QHHPVAWGNTNTRPREYKTALQAASTSSNPVHFIMYDSQSLLLPSETELTLPKLNIQTLLQRNIKRLLTTG 408          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A0L0D2W0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2W0_THETB)

HSP 1 Score: 59.7 bits (143), Expect = 3.400e-6
Identity = 76/283 (26.86%), Postives = 116/283 (40.99%), Query Frame = 1
Query:   79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRLAHTGRYVETAAI-ENALARVDKLYASTAGGDPARLALAA 924
            L++T+GP CAGK+++L    AK E                              P+  D+ IDD P +Y +IP A L             L     +DR  D    E   +A RLE  ++  + + R    R  A   AI  + R          R+++    +  R  L   A++ +Q  L  A      LVAWGNTNT+      A+  A+  G  +  +     +  +  +EL +R+V R+  TG+ V   AI ++A+A    L  +    D A LA AA
Sbjct:   20 LVITVGPPCAGKSTVL----AKRE------------------------------PAPLDVCIDDSPGLYARIPWADLPATSQAAIVRAAALLEGGSNDRDDD----EEDALAARLEATVAIRDDSERRACARALAR--AIGYVRRKYPRLAEQEARLASEAQVLQTR--LMRKAVAWAQTALGEAMAAGVPLVAWGNTNTKMPAIAHAVALADEHGYAIEVV----NMTDVDFDELVKRSVLRMLKTGKVVPVEAIYKSAVAAQRSLVETGLVFDAAALAEAA 256          
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Match: A0A7S1Z518_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z518_TRICV)

HSP 1 Score: 55.1 bits (131), Expect = 7.480e-6
Identity = 41/94 (43.62%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  664 GNTNTQARDYRGALEQAERTGRPVRFLRW--GHEL------------------PFLS---LEELSRRNVCRLAHTGRYVETAAIENALARVDKL 876
            GNTNT+ R+Y  ALE AE +GRPVRFL    G EL                   FL+   LE L  R++ RL  TGRYV + AI  A+ R D+L
Sbjct:    1 GNTNTRPREYVTALEAAEASGRPVRFLPHMRGDELGIRLEGGXXXXXXXXXAEDFLAPVDLETLLHRSIKRLVETGRYVPSRAIGEAVVRCDQL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LAX8_ECTSI0.000e+088.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPA7_9PHAE0.000e+091.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5Q0_9STRA1.520e-5242.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGB3_9STRA1.210e-4539.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TBP9_9STRA3.660e-1428.76Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9D5F8_9STRA6.340e-1246.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2IEC1_9STRA3.560e-925.37Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A0L0D2W0_THETB3.400e-626.86Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S1Z518_TRICV7.480e-643.62Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:978528..982154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score930.6
Seed ortholog evalue3.3e-268
Seed eggNOG ortholog2880.D8LAX8
Model size1665
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2DZXI@1,2S7DW@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-27_006050.1
Cds size1665
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348782.4465904-CDS-Ecto-sp6_S_contig11:978527..9788061682348782.4465904-CDS-Ecto-sp6_S_contig11:978527..978806Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 978528..978806 +
1682348782.4642832-CDS-Ecto-sp6_S_contig11:979175..9793761682348782.4642832-CDS-Ecto-sp6_S_contig11:979175..979376Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 979176..979376 +
1682348782.4727228-CDS-Ecto-sp6_S_contig11:979862..9800631682348782.4727228-CDS-Ecto-sp6_S_contig11:979862..980063Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 979863..980063 +
1682348782.483783-CDS-Ecto-sp6_S_contig11:980693..9808361682348782.483783-CDS-Ecto-sp6_S_contig11:980693..980836Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 980694..980836 +
1682348782.5014138-CDS-Ecto-sp6_S_contig11:981313..9821541682348782.5014138-CDS-Ecto-sp6_S_contig11:981313..982154Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 981314..982154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1280.1prot_Ecto-sp6_S_contig11.1280.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 978528..982154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1280.1

>prot_Ecto-sp6_S_contig11.1280.1 ID=prot_Ecto-sp6_S_contig11.1280.1|Name=mRNA_Ecto-sp6_S_contig11.1280.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=555bp
MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE
AAREERRSSGGGGMTSGNTAAAAAAAAAAVPSVADITIDDHPSVYHKIPT
ALLLGGCARGSPEDLLLARRPLSDRLGDPGCVETRLVAFRLEEHISAEEF
AGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDA
ISSSQERLAAAATDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRW
GHELPFLSLEELSRRNVCRLAHTGRYVETAAIENALARVDKLYASTAGGD
PARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRR
VGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTT
RREATSHGVSPPPPMARPTPAAGPDRFTFEGADRRRYEDTGAPLGLAQEW
TPRGGTGAGGSSRRRDHSDTGWGAGGPAGVPPTVMFGNEWGRKREWRRTG
YTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGTGADLQEMELVRRIRSF
RQRR*
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mRNA from alignment at Ecto-sp6_S_contig11:978528..982154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1280.1 ID=mRNA_Ecto-sp6_S_contig11.1280.1|Name=mRNA_Ecto-sp6_S_contig11.1280.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3627bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:978528..982154+ (Ectocarpus species6 EcLAC_371)
ATGATGGTACGCGGCGATCCCACTGCTGTGTGCATGGGCGCGGTGGCGGG GGCAGAGGCGGCCACAAACCGGCCTGCGCTGCTGGTGACGATCGGCCCGC AGTGCGCCGGGAAGACTAGCCTGCTGAGGGCGCTGGCGGCGAAGAGTGAG GCCGCTCGAGAGGAGCGCAGAAGCAGCGGCGGCGGCGGCATGACCAGCGG TAACACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCCCATCCGTTG CAGATATCACGATCGATGACCATCCTTCGGTGAGAACCAACACGTGTAAC GATGATTGCGCGTGTCTTCTTATGTGTGCTGTTTTTCGTGCCGAGGGGTC GTTGCTCTCTCTATAATACCCACATAGATATTAATAGTCTACTCCTTCTT GCGCGACATGCTGTTGTGTGTGTTGTGCCCCGCTTCCGGAAAACATGGAA GTCTGCCTGCGACGCAGAAGGCGTCCGCGTCAGTTGGACAAGCACGGGTG TTAGAAGGTGGTACAGGAAAGATGCAGATTATCAATGTGGACACACCACC ACTTCCGGTCACAGCAACAACAAACGACAACATTCCTGCTGGCGGCGAGG CTCGTGTTTCCATATCTTCACTCCGAATTTTGCCCGTTACTCCCACAGGT GTACCACAAGATCCCCACGGCTCTCTTGCTAGGCGGCTGCGCCCGGGGTA GCCCGGAAGATTTACTGCTGGCGCGGCGGCCCCTGAGCGATCGCCTCGGC GACCCTGGTTGCGTCGAAACCCGACTGGTGGCCTTTCGACTTGAGGAGCA CATCTCTGCAGAGGAGTTTGCGGGCCGGCTGGGGGAGTGCAGGGGTCAGG TACGTTTAACGGAGGGAGTATTTTGGCAGACGGGGGAAGGTGTGATGGCG TACGCGTGTCACAAGCAGTGGGAGCATGTCTCAGAAAAGAGATTTCGGGA GGTTGTCTTGGGTAGGTTTGTTGCAGCCTCCCCACCGTTGAAGAGGTTAC AGAGCTGTTGCTGCCGCGCTGCCGCTTTTCCTGTGATCGAAGTTGGGCAA GAACCGTGGTCGTTGTCGTAGCCGTTGACTCTTTTCTTGTGCTACTACTG GGCCTCGTGTAGGCGAACGCGTGTGTTGCGTGTCCTTCCATTCTGGTGAC TGCGGCGGTGGTCCCTGCAGGCGAGAGGGTTCAACAGTTGCATGCGTACA TTCGGCGGCGGTGAAAATATACGGTGTGCTGGAAATTGCTCATTAGATGC GGGCGATTGCAGCGATACACGCAGCCTACGGCAACATGAGTACACCCCCT CCTCTACCTGTGCGCTGAAACGTCGTCGTTGGCAGGCGTCGCCGGCAGCC ATCGCGGCTCTCTGCAGGGCCGTAGAGAGCGCGGTGTCGGACAACGTGAG GATTTCCACCCCCACCGTAGACGTTTTCGTGAGGGAAAACCTCTTCCCTG ACGCCATCTCGTCCAGCCAGGAGAGGCTGGCGGCCGCTGCGACGGACGAG GAAGGGCTAGTGGCGTGGGGGAACACCAACACCCAGGTGAGGCGGCTGAG TGGACAAGCTCCTGAGTTTGTGGCTGGTAGTTGAAAGGCTGACGCCGTCA AGTTGTACGCACTCAATTTGTTTGCCTGGTGTGCTCGTGGTAGAGCGCGG CACACGCTCAATTTTGGTTGCATGTACTTGTGTGGTGAGTTGTAGCCTAT CATAGTTTCACGTAGGTGTTGGCTTTCCCTGTGGGTCGTGGCAGCGTGGT TCTGGGGCGGTGAGACCTGGTGTGCTAACGAGAACTAGCTGAAGCTAATC ACGTGAAATATTCCTCCACAATCCTACTCATCTTGCTTTTGCTGTCGCCT CTGCCTGCTTGGTGTATCGGTTTCGAAATTCGTCCCCCCTCGGAGTTTTG CAGTTTCGCAGCCTACCGAGAACAATTTGCACGCCGCTCGAGCTGTAACC TCGCGCTTGTGTTTATCCTGCCCCTGAGACACATCACCCACGCCCTCTAC ACTGATGCTTCTTCGGCCACCCCTTCCCCCCCCGCCCCAGGCAATGGTCC GCCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAA CATTAGAGTACGCCCCCAAACCCCCTGTGACCGATGGTTGGTGAACCGGC ACTAACTCCGGTTTAGGCGAGGGACTACCGGGGAGCGCTAGAGCAAGCAG AGCGGACCGGACGGCCGGTTCGGTTCCTGCGGTGGGGCCACGAGCTGCCC TTTTTGAGCCTAGAGGAACTGAGTCGGCGCAACGTGTGCCGTTTGGCTCA TACAGGAAGGTTAGTCGTGCGGAAACAGCACCCACGGGGTGTGTTTAGAA ACTCACTCGCGTGCGTTTGTTTGTTTTGTTTTTTCGGGAGCCATGTGAAC ATGTCGAAAGACGTTTGAAACTTCGTTTTCGAAAGGGGTGAAAACAACCA AGAGCTTTCCTCCTGGAACAGGGCTTAGGGGTCATGTTGTGTTTCTTTCG CGTTAGTTAAGCTTGTGAGGCTCGTATGTGTTTTCGGCCAATAAGAGACG ACTGAATTTGGGCAGTTTGTTGGAGACGAGTTATGTCGATTTTGCGCGAT GTCTTGGTTGTTTTCGAGGTATGTATCCGACGTGCCCGTTCTTGTTGATC TTGTGGTGGAGAACTCTCCCGCTGTTTGTTGTTTTGTTACTTGCGCCGCC CCTGGCGTCACCTCCGTCATATGCCACCCCGTTCCACATTGTTCGCTGCT GCTTCTGTTGCCCTCGCGTGTACATATGTAAACCAGGTACGTCGAAACGG CGGCCATCGAGAACGCCCTCGCTCGAGTCGACAAGCTCTACGCCTCCACC GCTGGGGGAGACCCAGCGAGGCTAGCCCTCGCGGCCGGTTTCCAGATGGA TGCCTCCGGCGGGGTTCACTCCCAATCATCCCCCCCCCGACGCAGGCACG ACAGCCCAAGATCTCGTGCCGGCCGCGGCAACGGCAGTTGGGAGAGGAAT ACGCGGCGACGCGTGGGTGGCGGGGGAACAGCAGACACGAGCGCTTACAG CGGCGGCGGTATCGGGGGCTCGGAAGGTGTCGTGCGTGGGAGGGACGGGG CGTGGGACAACAGAGGAGGCAGCGGGACGTGGTTCCATGACGAAGCGAGT CGGCGAACCACGCGGCGGGAAGCTACCTCGCACGGCGTATCGCCGCCGCC ACCGATGGCACGACCGACACCGGCCGCCGGGCCTGACCGGTTCACCTTCG AAGGCGCGGATCGTCGGCGCTACGAAGACACCGGCGCTCCTCTGGGGCTA GCGCAGGAATGGACCCCACGGGGAGGCACCGGCGCTGGGGGAAGCAGCCG TCGTCGGGACCACTCCGACACGGGGTGGGGGGCAGGGGGCCCCGCGGGCG TGCCCCCGACGGTGATGTTCGGGAACGAGTGGGGAAGGAAGCGGGAGTGG CGACGGACCGGTTACACTGACGACGACATCGACCCGGGGATGGGGTCGTG CTTCTTCAGGACCCCGGCGAACTCCACCGGGGTGCTCAGGCGCAGCGACC TTGGGGAAGGGACGGGGGCGGACCTGCAGGAGATGGAGCTCGTGAGGCGG ATCAGGAGTTTCCGGCAGCGACGATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:978528..982154+

>mRNA_Ecto-sp6_S_contig11.1280.1 ID=mRNA_Ecto-sp6_S_contig11.1280.1|Name=mRNA_Ecto-sp6_S_contig11.1280.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1665bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:978528..982154+ (Ectocarpus species6 EcLAC_371)
ATGATGGTACGCGGCGATCCCACTGCTGTGTGCATGGGCGCGGTGGCGGG
GGCAGAGGCGGCCACAAACCGGCCTGCGCTGCTGGTGACGATCGGCCCGC
AGTGCGCCGGGAAGACTAGCCTGCTGAGGGCGCTGGCGGCGAAGAGTGAG
GCCGCTCGAGAGGAGCGCAGAAGCAGCGGCGGCGGCGGCATGACCAGCGG
TAACACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCCCATCCGTTG
CAGATATCACGATCGATGACCATCCTTCGGTGTACCACAAGATCCCCACG
GCTCTCTTGCTAGGCGGCTGCGCCCGGGGTAGCCCGGAAGATTTACTGCT
GGCGCGGCGGCCCCTGAGCGATCGCCTCGGCGACCCTGGTTGCGTCGAAA
CCCGACTGGTGGCCTTTCGACTTGAGGAGCACATCTCTGCAGAGGAGTTT
GCGGGCCGGCTGGGGGAGTGCAGGGGTCAGGCGTCGCCGGCAGCCATCGC
GGCTCTCTGCAGGGCCGTAGAGAGCGCGGTGTCGGACAACGTGAGGATTT
CCACCCCCACCGTAGACGTTTTCGTGAGGGAAAACCTCTTCCCTGACGCC
ATCTCGTCCAGCCAGGAGAGGCTGGCGGCCGCTGCGACGGACGAGGAAGG
GCTAGTGGCGTGGGGGAACACCAACACCCAGGCGAGGGACTACCGGGGAG
CGCTAGAGCAAGCAGAGCGGACCGGACGGCCGGTTCGGTTCCTGCGGTGG
GGCCACGAGCTGCCCTTTTTGAGCCTAGAGGAACTGAGTCGGCGCAACGT
GTGCCGTTTGGCTCATACAGGAAGGTACGTCGAAACGGCGGCCATCGAGA
ACGCCCTCGCTCGAGTCGACAAGCTCTACGCCTCCACCGCTGGGGGAGAC
CCAGCGAGGCTAGCCCTCGCGGCCGGTTTCCAGATGGATGCCTCCGGCGG
GGTTCACTCCCAATCATCCCCCCCCCGACGCAGGCACGACAGCCCAAGAT
CTCGTGCCGGCCGCGGCAACGGCAGTTGGGAGAGGAATACGCGGCGACGC
GTGGGTGGCGGGGGAACAGCAGACACGAGCGCTTACAGCGGCGGCGGTAT
CGGGGGCTCGGAAGGTGTCGTGCGTGGGAGGGACGGGGCGTGGGACAACA
GAGGAGGCAGCGGGACGTGGTTCCATGACGAAGCGAGTCGGCGAACCACG
CGGCGGGAAGCTACCTCGCACGGCGTATCGCCGCCGCCACCGATGGCACG
ACCGACACCGGCCGCCGGGCCTGACCGGTTCACCTTCGAAGGCGCGGATC
GTCGGCGCTACGAAGACACCGGCGCTCCTCTGGGGCTAGCGCAGGAATGG
ACCCCACGGGGAGGCACCGGCGCTGGGGGAAGCAGCCGTCGTCGGGACCA
CTCCGACACGGGGTGGGGGGCAGGGGGCCCCGCGGGCGTGCCCCCGACGG
TGATGTTCGGGAACGAGTGGGGAAGGAAGCGGGAGTGGCGACGGACCGGT
TACACTGACGACGACATCGACCCGGGGATGGGGTCGTGCTTCTTCAGGAC
CCCGGCGAACTCCACCGGGGTGCTCAGGCGCAGCGACCTTGGGGAAGGGA
CGGGGGCGGACCTGCAGGAGATGGAGCTCGTGAGGCGGATCAGGAGTTTC
CGGCAGCGACGATGA
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