mRNA_Ecto-sp6_S_contig11.1278.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1278.1
Unique NamemRNA_Ecto-sp6_S_contig11.1278.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE)

HSP 1 Score: 749 bits (1933), Expect = 3.610e-245
Identity = 408/442 (92.31%), Postives = 415/442 (93.89%), Query Frame = 3
Query:    3 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFVSSPCVYVC 1328
            AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLV TDAAGSALRR+LKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCD PPPPTA+PLGRRPAKDPTEKSFAPRFSGAVAGAAA+GAASVVDDPDD  RFGAYLEPISGS EEHAEXXXXXXXXXXXXXXXX        AERSVVEGA     GGGEGR VSVSKMLP ARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALF+ELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFP  SEVPTWVKSLLLSLPEDAL RF+    ++VC
Sbjct: 1466 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVQTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDPPPPPTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANGAASVVDDPDDASRFGAYLEPISGSAEEHAEXXXXXXXXXXXXXXXXXXXXXX--AERSVVEGAXXXXXGGGEGRTVSVSKMLPTARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFLELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPASSEVPTWVKSLLLSLPEDALRRFL----IFVC 1901          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: D8LAX6_ECTSI (Outermembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX6_ECTSI)

HSP 1 Score: 713 bits (1841), Expect = 5.290e-233
Identity = 388/430 (90.23%), Postives = 393/430 (91.40%), Query Frame = 3
Query:    3 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDAL 1292
            AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSV+RLV TDAAGSALRR+LKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTA+PLGRRPAKDPTEKSFAPRFSGAVAGAAA+GAASVVDDPDDV RFGAYLEPISGSVEEH E XXXXXXXXX      DSFEARREAERSVVEGAAASG    EGRAVSVSKMLP ARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQ        G P     P W K  +L LP   L
Sbjct: 1345 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVIRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANGAASVVDDPDDVSRFGAYLEPISGSVEEHVEEXXXXXXXXX------DSFEARREAERSVVEGAAASGXXXXEGRAVSVSKMLPTARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQGGGGFPLVGVPGWQGGPHWGKVFVLLLPGRPL 1768          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A835YG59_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG59_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.100e-49
Identity = 155/448 (34.60%), Postives = 194/448 (43.30%), Query Frame = 3
Query:    9 YFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMR-LVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRD-----MGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFVSSPCVYVCWS 1334
            YF+VS V RL +DGA+ EQ  KL A+R LF  VR+ ++ + P +W ++R +  LV  V+  L + DAA  ALR  ++I F GEAGVDEGG+LSE  TL FE            C      +A+ LG                +G+  G+ A+ A             G+YL                                                                PAAR   Y  A L  Y  +GR +  CL  GRR+G  LAPS                                          +G  FEDVG P  G VT GN+A++V AK R ILV SR  AL A  AG    L DLSP A   + LL+ ADWRVLLCG+ HVS  QVV+ L WY FP  S VP W+ +LLLSL ED L RF+    V+VC S
Sbjct:   82 YFQVSFVDRLLEDGAVPEQHAKLAAMRALFARVREASRRAPPTRWMLRRGATTLVSDVLAALAALDAA--ALRAPVRIAFAGEAGVDEGGMLSEALTLFFEV-----------CARGMRISARQLGSS--------------NGSSGGSCAAAA-------------GSYL----------------------------------------------------------------PAARAH-YDPAALRAYELLGRAVALCLYSGRRVGGALAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLSFEDVGDPGGGAVTAGNRAQFVQAKVRHILVASREAALAAAAAGVTRGLADLSPEAPSLMRLLAPADWRVLLCGDTHVSSAQVVSALRWYNFPPASGVPRWLPALLLSLGEDTLRRFL----VFVCGS 420          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A7S2WLZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLZ2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.160e-45
Identity = 149/466 (31.97%), Postives = 207/466 (44.42%), Query Frame = 3
Query:    9 YFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVR-------------------DEAKPSGPLKWTVKRDSRYLVPSVM-----RLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFIT-GTDT---------TLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFV 1304
            YF  S+  RL   G LL Q  KLEAVR L R VR                   D  +P  P + + ++    LV  V+     R  + + AG A R  LK+ FQGE G+DEGG+ +EM+ L FE ++ P  GLFE C                                        ASV    +D        +P +G +   +                       R++E + V G+                  LP     G  +     YRA+GR +VKC  EG+RIGS  A  ++KF+  G +           L DL+ +D +   SL W+L NTG   +G DFED+       V+D NKAE+V  KAR +LV  R   LEA+++GF +A+ DLSP A  F+ LLS ADW VLLCGE++++   V   L + GFP  S++P W+   +L    D L RF+
Sbjct: 1179 YFTASYSDRLIASGDLLRQNEKLEAVRSLIRQVRRDHSNRVERLTVQRRGLDLDTPRPDRPRRNSRQQADARLVWQVLEHFARRGGNAEQAGGA-RSHLKVEFQGEVGLDEGGLTAEMFRLFFEGLVSPEVGLFE-CS---------------------------------------ASVAQGTED-------HQPEAGEMAPPS-----------------------RQSEGAFVPGSMV---------------YLPKVGVVGQEE----HYRAVGRAVVKCFYEGKRIGSHFANCLYKFLAHGQEVKHAKGIEPRALDDLKQWDPEMGSSLDWLLRNTGAEHLGLDFEDIPGHSSQTVSDANKAEFVHMKARYVLVECRLAQLEAIRSGFWQAMMDLSPEATPFLRLLSSADWSVLLCGEDNLTPEAVTDCLEFRGFPKSSKIPKWLPQTILQFSPDNLRRFL 1554          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A6A5BKR9_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BKR9_NAEFO)

HSP 1 Score: 86.3 bits (212), Expect = 1.790e-13
Identity = 53/203 (26.11%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  735 SDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTL-------------RDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFV 1304
            S A    + AIG++++K + + R I    +P +FKF++    T+             RDL+ FD     SL+ +LA++G+ +   DF ++   ++  VTD NK +Y   K R +++  R   L+ALK GF E++ +L     +   + S  +  +L CG +++    ++++L + GF + S  P ++  ++       L +F+
Sbjct:  994 SSADPKIFEAIGKILIKAIYDQRVIPEVFSPFLFKFLSYKPNTMNDDLNFTKLVITFRDLELFDETMANSLRLLLAHSGVDEWCLDFSEIPGCEEKLVTDENKKDYALLKIRHVMLTQRLEQLKALKKGF-ESIEELQQSQLI---IFSWKELMLLCCGSDYIDAQSIISLLKFKGFSSNSSTPNYLIEVISHFSTVELRQFI 1192          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: G4Z201_PHYSP (HECT domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z201_PHYSP)

HSP 1 Score: 84.0 bits (206), Expect = 3.790e-13
Identity = 56/161 (34.78%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  744 QLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF----------EDVGLPDKG---PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEAL-RDLSPGAALFVELLSHADWRVLLCGEEHV 1184
            QL    A+GRL+ + LLEG  +   LAP + K + G   T  DL+DFD + +E+L+W+L N     +G DF           D+ L   G   PVTD NK +YV  K + ++V S  P L+A   G  E + RDL       + L    ++  LLCG + +
Sbjct:  222 QLLHLYAVGRLLGRALLEGSMMCFHLAPPLLKLMLGYPLTFSDLEDFDPEVYENLRWLLENENADALGLDFAVTVKDGDCYRDIELVPGGDAIPVTDSNKRDYVERKWQYLMVESVGPQLQAFLRGLYEIIPRDL-------LLLFDPEEFNFLLCGSDEI 375          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: SPKUL_DICDI (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SPKUL_DICDI)

HSP 1 Score: 81.3 bits (199), Expect = 6.960e-12
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 3
Query:  756 YRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRD-MGFDFEDVGLPDKG---PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDAL---LRFVS 1307
            ++ +G++ +K +++G+ I      S FK++ G    LRDL+ +D Q  +S K +L    + + +   FE  GL + G   PVTD NK E++      +LVG R+  LEA K+GF  ++  L+   ALF    S  + ++L+CG   V    +     + GFP  S  P   +  +  + +D +   LRFV+
Sbjct: 1641 FKILGKIFLKSIIDGKPIPDCFPTSFFKYLLGVKVNLRDLEIYDPQLAQSFKKVLVLDNIEEYLSTTFE--GLIEGGESIPVTDLNKEEFIQRNIERVLVGCRQSKLEAFKSGFM-SIDSLNAHFALF----SPTELQLLMCGNTLVDSSVLQKNFKFIGFPDTSSTPKDFRRAVDEMNQDEIRLFLRFVT 1824          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A8K1C6R9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6R9_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-10
Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = 3
Query:  738 DAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF---EDVG--------LPDKG--PVTDGNKAEYVSAKARLILVGSRRPALEALKAGF 1085
            D  L  + + GRL+ +  LEG   G   A  + K I G   +  DL+ FD ++++ LKW+L N G+  +  DF   E VG        LPD G   VTD NK +YV  K + +L GS    L AL  GF
Sbjct:  335 DNHLAYFFSTGRLLGRAFLEGYVTGFHFALPLLKIILGLPVSFSDLEFFDPEAYQGLKWLLDNNGVEHLSLDFTVCEQVGDEMVIVELLPDGGNIEVTDENKRQYVDLKLKYLLFGSVSSQLYALLQGF 463          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A0W8CAX7_PHYNI (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CAX7_PHYNI)

HSP 1 Score: 70.9 bits (172), Expect = 5.170e-9
Identity = 60/218 (27.52%), Postives = 91/218 (41.74%), Query Frame = 3
Query:  738 DAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF---EDVGLPDKG-----------PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRS------EVPTWVKSLLLSLPED----ALLRFVSSPCV 1319
            +  L  Y A GRL+ + LLEG   G  LA  + K I G   T  D++  D +++ SL+W++ N G+ D+G DF   E +   +K             VTD NK EY+  + R +L  S    + A    F + L ++ P   L +      ++  LLCG   +       V  W      S       V  W   ++  +P +     LL    S CV
Sbjct:  212 EDHLAYYFATGRLIGRALLEGGIWGFHLALPLLKVILGVPVTFADMEFLDPETYRSLRWLMDNDGVDDLGLDFSLTEQINESEKIVVDLIPNGRNIAVTDANKREYLDRRFRYVLFESVADQMHA----FLKGLYEVIPREMLLI--FDPEEFDYLLCGSPEID------VTDWEAHTVMSPNLEGANVTRWFWEIVRQMPNEYRRRLLLFATGSACV 417          
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: W2RGN4_PHYPN (HECT domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2RGN4_PHYPN)

HSP 1 Score: 70.9 bits (172), Expect = 7.270e-9
Identity = 60/218 (27.52%), Postives = 91/218 (41.74%), Query Frame = 3
Query:  738 DAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF---EDVGLPDKG-----------PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRS------EVPTWVKSLLLSLPED----ALLRFVSSPCV 1319
            +  L  Y A GRL+ + LLEG   G  LA  + K I G   T  D++  D +++ SL+W++ N G+ D+G DF   E +   +K             VTD NK EY+  + R +L  S    + A    F + L ++ P   L +      ++  LLCG   +       V  W      S       V  W   ++  +P +     LL    S CV
Sbjct:  402 EDHLAYYFATGRLIGRALLEGGIWGFHLALPLLKVILGVPVTFADMEFLDPETYRSLRWLMDNDGVDDLGLDFSLTEQINESEKIVVDLIPNGRNIAVTDANKREYLDRRFRYVLFESVADQMHA----FLKGLYEVIPREMLLI--FDPEEFDYLLCGSPEID------VTDWEAHTVMSPNLEGANVTRWFWEIVRQMPNEYRRRLLLFATGSACV 607          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNX3_9PHAE3.610e-24592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAX6_ECTSI5.290e-23390.23Outermembrane protein n=1 Tax=Ectocarpus siliculos... [more]
A0A835YG59_9STRA1.100e-4934.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WLZ2_9STRA1.160e-4531.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A5BKR9_NAEFO1.790e-1326.11Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
G4Z201_PHYSP3.790e-1334.78HECT domain-containing protein n=1 Tax=Phytophthor... [more]
SPKUL_DICDI6.960e-1230.37Bifunctional serine/threonine-protein kinase/NEDD4... [more]
A0A8K1C6R9_PYTOL4.210e-1037.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0W8CAX7_PHYNI5.170e-927.52Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=P... [more]
W2RGN4_PHYPN7.270e-927.52HECT domain-containing protein n=14 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:954135..959876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score604.4
Seed ortholog evalue4.8e-170
Seed eggNOG ortholog2880.D8LAX6
Model size2493
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons8
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
Cds size1467
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1278.1prot_Ecto-sp6_S_contig11.1278.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 954979..959200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348782.322655-UTR-Ecto-sp6_S_contig11:954134..9549781682348782.322655-UTR-Ecto-sp6_S_contig11:954134..954978Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 954135..954978 -
1682348782.4028735-UTR-Ecto-sp6_S_contig11:959200..9592941682348782.4028735-UTR-Ecto-sp6_S_contig11:959200..959294Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 959201..959294 -
1682348782.412096-UTR-Ecto-sp6_S_contig11:959788..9598761682348782.412096-UTR-Ecto-sp6_S_contig11:959788..959876Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 959789..959876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348782.3319085-CDS-Ecto-sp6_S_contig11:954978..9553361682348782.3319085-CDS-Ecto-sp6_S_contig11:954978..955336Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 954979..955336 -
1682348782.3417172-CDS-Ecto-sp6_S_contig11:956414..9565091682348782.3417172-CDS-Ecto-sp6_S_contig11:956414..956509Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 956415..956509 -
1682348782.349015-CDS-Ecto-sp6_S_contig11:956911..9571271682348782.349015-CDS-Ecto-sp6_S_contig11:956911..957127Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 956912..957127 -
1682348782.3562188-CDS-Ecto-sp6_S_contig11:957387..9574891682348782.3562188-CDS-Ecto-sp6_S_contig11:957387..957489Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 957388..957489 -
1682348782.364653-CDS-Ecto-sp6_S_contig11:957802..9579261682348782.364653-CDS-Ecto-sp6_S_contig11:957802..957926Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 957803..957926 -
1682348782.3823683-CDS-Ecto-sp6_S_contig11:958284..9587511682348782.3823683-CDS-Ecto-sp6_S_contig11:958284..958751Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 958285..958751 -
1682348782.3932333-CDS-Ecto-sp6_S_contig11:959095..9592001682348782.3932333-CDS-Ecto-sp6_S_contig11:959095..959200Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 959096..959200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1278.1

>prot_Ecto-sp6_S_contig11.1278.1 ID=prot_Ecto-sp6_S_contig11.1278.1|Name=mRNA_Ecto-sp6_S_contig11.1278.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=489bp
MRLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFG
LFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVD
DPDDVGRFGAYLEPISGSVEEHAEEEEEEEDDDAGSDDDGDSFEARREAE
RSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMV
KCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTG
MRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAG
FAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPT
RSEVPTWVKSLLLSLPEDALLRFVSSPCVYVCWSLIFYRNRSWRSPCAVS
PGRRRSPRPTRASSSWTFPIMTRSPCCGTSCCRPSTTPHRLTSCEKGFGA
AARAAQAVNHNTASFDVAKKKKTCWRTDAAGCQQHCIV*
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mRNA from alignment at Ecto-sp6_S_contig11:954135..959876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1278.1 ID=mRNA_Ecto-sp6_S_contig11.1278.1|Name=mRNA_Ecto-sp6_S_contig11.1278.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5742bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:954135..959876- (Ectocarpus species6 EcLAC_371)
AGGCAAAATACTTCCGGGTTTCCCACGTGTCGAGGCTTCAACAAGACGGG GCTCTGCTGGAACAGACTCGCAAGCTCGAGGCCGTTAGGTGAAGAACAAG CAACTTGACACTCAAGATATAAGCGACAACATCGGGCTATTCCCGTGTTT TTGTTGGGACTTGTCTCAGCGCTTAAATTGAGTAACAACACCGTCGCCTC CGTGAAACAATGGAAAAGCCTAACGATCGGCTGCTCCTAGCTGCCGTCCG TTGTTACCCCCGCTCGGACAGTAGCAGCAGCAACTTCCCCAATGGACCGC TTGCTACGGGGGTCAGAGACCGCCCCCATTTAGCGGTTTCTCCCGAGCTC GGCCTGTTGTTTTGCTCCTCAGCCTCCCTCGGTTGCTATCTCAAAACACC ACACTTGACGACCGTACCAAAAACACATATGAAAACAACATTGCAGGGTT CCGCACCGTGCTTTGTCTCTTTTCACTGTTGTACCGCCACCCCACCGCCG GAACGAAACAACACCATGTATATGGTACGGTTCTGTTCCGCACCGTGTTC TGCCCAAAAATATGGATACACACCCATCGCAGGGTTCTGTTCCGCACCGT GCGGGACGAAGCCAAGCCGAGCGGTCCCCTCAAGTGGACCGTGAAGCGGG ACAGCCGGTACCTCGTGCCGTCGGTGATGCGGCTGGTGAGCACGGATGCG GCGGGATCTGCTCTCCGGAGGTCGCTCAAGATTACCTTCCAGGGGGAGGC CGGGGTGGACGAGGGAGGGATTCTCAGCGAGGTGTGCTGCTGTGGTTGGT GGTGGTCGTGGTGGTGTTAATGTTGTTGTTGTTGTTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCCTCTGGATGTTGATGTCAGTGGCAGTGGTGGTGGT GGTGGTGGCGGCGTTGTCTTTGAAACAAATTTGTGGAAGGAGATGTTTGT TTTTTTCACTCGACCCGTGCCGCCACTGAGGTCGCTGCAGGTTTCCTCTC TCAAACCCTTCAACACCAAACCGAAACCCTCATTTTTCTAACCATCCTCT CAACCAAAGCACCCGCCAGCGCCCAGTGCCGTCCCTCTCTTTTCTCAACA CCCTCCCTCCCCGTTCCGCCCACAGATGTACACCCTTCTGTTCGAGGCCA TGATGCTGCCGAGGTTCGGGCTGTTCGAGAACTGCGACTCGCCCCCCCCG CCGACCGCGAAGCCCCTCGGCCGGCGGCCTGCCAAGGACCCTACCGAGAA GTCCTTCGCCCCGCGGTTCAGCGGCGCTGTCGCCGGCGCCGCGGCTAGCG GAGCGGCAAGCGTTGTTGACGACCCCGATGACGTTGGCAGATTCGGCGCC TACTTGGAGCCGATATCCGGGAGCGTCGAGGAGCATGCGGAGGAGGAGGA GGAGGAGGAGGATGACGATGCAGGCAGTGATGATGACGGCGATAGCTTTG AGGCTCGGCGAGAGGCGGAGCGGTCGGTGGTGGAGGGGGCCGCCGCCTCG GGCGCGGGGGGCGGGGAAGGGAGAGCGGTGTCGGTGTCGAAGATGTTGCC GGCCGCGAGGCCGGGCGGCTACTCGGACGCACAGCTCGGGAGGTGAGAGG GATGGGGTGGATGGATGTCGGTCCGTTGGCTAGAATCGAGCATCAACCTG TGGTTGGTGACACGTTCGTCGGAAGCGTCGTGGCTGATGTGTTCGGGCGT TTTTGTTTTTGTGGGGACGCATTGGCAGGGGTTTGTATCGGGTTCTGCAG GAGGGGATGGGGGGCGGGCGAGGGGCACAGGGGAGGTCAGGCGTAGGCCG GCTTCTTCGGCATGTACTTTTTCTTTTTTCACTCTTCGTGTTCAAGCATC GACAAATCGAATGACAGCTGGCCACCTTACGCTCACGCGAGCGTGCTTAT CTTGTCGTTGCGGACAATGTTGTTTCGTGCGTGTGGGTGGCGGGAACCAG GTACCGGGCCATCGGTAGACTGATGGTCAAGTGCTTGCTCGAGGGCAGAA GGATCGGCAGCCGCCTGGCGCCGAGCGTGTTCAAGTTCATCACTGGGACG GACACGACGCTGCGGGACCTCCAGGTTAGTGAGGACGGGGAACGTTCTGG ATGTTTCCCCGGGTTTCCCACGTAGTCGTCTTGTGCCGCGTGTTTTGACT GCTGCTGCCGCTAGGTAGAAAGAGTCCTGCTGCCCGCTAGGTAGGACTAG GGTCGCTCACTACCTGGAAGCCTGACGATCCCCACCCTCTGCTTGTCGTC CTTGTAGATAGCATGAATCACCTTATGAGTTGTCTTTGGTGTGAACACGC TCCTCCATATTTCCTCCTGTAAACATTTTTTCTTGACCTTACCTTCCCCC CTCCTCCATGTACCCGCGGGGTTATAATCCTGCACAGGACTTCGACTCTC AAAGTTTTGAGAGCCTCAAGTGGATGCTGGCCAACACCGGCATGCGAGAT ATGGGCTTCGACTTTGAAGACGTTGGCCTCCCTGACAAGGTACGTTTTAC CCCCCCCGTTGCCTGGCCGCCCCATACCCGTGAGACTGCTCAAAACATGC ATACCCAAGTAATTTTTACGGGCTTACCGGCCGCACCAACACATTTCCTC TATGCTCTCTCTCTCCCTCTCTCTAGTTTCTCTCTTCCTCTCTCTCTGGC TCTCTCCCCCCCACATCTCTCTGTCGGCCTATCTATCTATCTCCCTGTCT CTTCTGTCTCACTCTCTCTCCTCCCCCCCTCCATCTATATTTTCCATAGG GCCCCGTCACGGACGGCAACAAGGCCGAGTACGTGTCGGCCAAGGCCCGA TTAATCCTCGTCGGGTCGAGAAGGCCTGCCCTAGAGGCGCTCAAGGCTGG ATTCGCCGAGGCTCTCCGAGACCTTTCCCCAGGGGCAGCGCTCTTCGTCG AGTTGCTGTCGCACGCTGATTGGAGGGTCTTGCTGTGCGGGGAGGAGCAC GTCAGCGGACCGCAGGTATTTTTTTGAGGGGGTTGGGGGTGTTCGAGAAT AGGAGAGTAACTTGGGCAGGATGGATAGATAGATTTAATAGCACAAATCA TCTGTTGATTTGCCTCAGGTTGTTGGCTGGCCTTTGACCACGCATGCATC GATATAATTCCGAGATGATTCACCATAGGTTCCTACTTCCTACTTCAGCT GAAAAGTCACACCACACGCATCCCGACAAGGCGGGGGTGAGCAGTTCATG CAGGCGCCCCTTGATTTCGTCGAAATTGCAGCCTCTTCTTTTCTTCCTCT GCTGTATTGTGTTCGTCTGCTGCCTGTTGACAACCCATCCAATCCAAATG TAACCCCCCCTGTCTGCGCCCCCCCCCCCCCCCGCCCCTGACTGCTTCGC ACGGTCTTCTTGCAAAGGTGGTCGCGGTTCTCACCTGGTACGGGTTCCCG ACTCGCAGCGAGGTCCCCACTTGGGTCAAGTCTTTGCTCCTCTCCCTCCC CGAAGACGCCCTTGATCTTCGAAGACGCCATTGACCTTCCCTACAAAGCG ACGGTTCTTGATCTTCGGTGCTTTCACTTGCAGAGACAGTTGGAAGCACT GACGTGGTGCCCTCGACCCCGCACAACATGATCTACTCGACCACCATTAT GGTTACCGCCATCCGAGTTCACGCCGGAATTGGCAAACGTCGTTGAGACG AAAACCCAATGATGGCAAACACCGGCGGGGGGTCATTGCCAAGCGACGAA AACCAAAACCCCGATGGTAAACACCGGGGGGCTGGTTTTACAACGTCCTT GCCAAACGACGAAAACCCAAACCCCGATGGCAAACAAGGCTGAGGGGGGG GGGGGGGTACTCATGTTTCTCATGCCGTGGTTGTTCGGACGGTTGGCCTC GCACCCCTACAATGCCGGGCGGAGCGTATGCCGAGGTTTTACCGGCCCAG GCTACCGTTTCACGAGGATGAACCAGAAGCTGGTCTTCCTCCTTAGGATT GCTGTGCAATCCAGATATGACATGGGTTGATTGCGCATCCCGGGGGCGGG AGGTTACAATTCGTCACGTGATAGGCGAGATGGCACGCAGCTCTGTCTCT CCTCTTAACTGTAACTGTTGTGTGCAGTGGTGCAAATGGAAGTCTTGCTG TTCGCTAAAACTGGGCGGCGGCACCACGGCGCGGTGTTGGTTGCGGTGTT TTTCTAGGGTACACAGGGGGGTGGGTCGTTGTATGGAAATTCTTCACCTC GTAGGTGTAAAAAACGAAAAAAAGAGGCCAGAATTCCCGCGGCCAATCGT TGCGTTATTCGTGAGATGGGCTGTTTTACTACCTGTCGCTGTCAAAATCT CCCCTGAGGCAGCCATGCTGCTTTGGCTCGCAAGTATGATAGATTACATG CTACATGCAAGTGCTCGCCCTTGCCTCGACAGCCTCGGTGATTGCTTTTG CGTTCCAGCAGTACATCCACAATTTTTTCCGAAGGCGAACAACTCGCCGC ACGAAAGATGGACCCCAAGACAGCAGTTCCGCTCTTTTTAGGACTGCTGT TGGTTGTGGTTGTCGCTTACTCAAATCACTGCTCATCGCCGCTGCGTTTC GTGTCCTCGCCGTGTGTGTATGTGTGTTGGTCCCTGATTTTTTATCGAAA CCGCAGTTGGAGATCACCGTGCGCTGTCAGCCCAGGTCGGCGGCGCTCCC CGCGGCCCACACGTGCTTCTTCCAGCTGGACGTTCCCGATTATGACAAGG AGTCCGTGCTGCGGCACAAGCTGCTGCAGGCCGTCAACAACACCGCATCG TTTGACGTCGTGTGAAAAAGGATTCGGCGCTGCGGCACGAGCCGCTCAGG CTGTCAATCATAACACCGCATCGTTTGACGTCGCAAAAAAAAAAAAAACG TGTTGGCGCACAGATGCTGCAGGCTGTCAACAACATTGCATCGTTTGACG TGGTATGATCGCAACAAGAAACAGTTGTGTTTTTGGTAGAAATCGAAAAA CAGGTTTCGACCACAGGTGGCGTTTTCTGTGCGCTGGGTCTCTCCCTCTG CATGCTGCGCCCACGGTCAAACGCCGCCCTCATCTTTGACCTGAGGGTCG AATGCGCCAATCCGCTGCCATGTGCGGGACCCACAGACTCAACGCATGTC GCCCTGAAATTCACTCTTACACGGCTATCGAGTGAAACGAGCGATTGGCT CAGGTGTGGGCTGCGCTGATGACGTCAGCGGGGGTCTCCGCGACAGAGCT GTGCAGGCCGGACCGACTTCATGCGGAGTGGTGTGCTGTGTCGCACGCCC AGCAGTTCGTAGGTTGCCGAGGACGTCTGGGGTGCATCTTTGGTGTGCGG AATAAAAGAGCGTGGATCGCCTCTAGATGTCGAGCGCTTGATGAGCCCTT GAGGAGCGGTTTCGTTTTTAACTTATGTCGTCTTTTCTTGTAAGAAGATG AAGGAGGCAAGACTAGGCGCCAGCGGACCAGCCTTCGATGGGGAGCCTGC TGCCCCTCCCAACAAATTAGTGCCAACACTCTGGTGTTCTTCCATCAGAC TGGACAGACAGACAAAGTGCGCAAATAACTCCTCTAGCGGGACAAGCGAG GAAGGGATTTCGGTGAATGATAGCCTAGTCTGCAAGAAGAGCAGTTTGTG ATCGCGATTGCATTTTCCCGAGCCGTTGTTCCCGACGACGCCACAGCCTT CGGCGGGAACCCTTCGGTGCTCGAGAGCACCCTGACCGCGACACCGTCGT ATGCTCTGGTTCCTACCGAAGGGTTCCGTGTCTGGATGATGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:954135..959876-

>mRNA_Ecto-sp6_S_contig11.1278.1 ID=mRNA_Ecto-sp6_S_contig11.1278.1|Name=mRNA_Ecto-sp6_S_contig11.1278.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1467bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:954135..959876- (Ectocarpus species6 EcLAC_371)
ATGCGGCTGGTGAGCACGGATGCGGCGGGATCTGCTCTCCGGAGGTCGCT
CAAGATTACCTTCCAGGGGGAGGCCGGGGTGGACGAGGGAGGGATTCTCA
GCGAGATGTACACCCTTCTGTTCGAGGCCATGATGCTGCCGAGGTTCGGG
CTGTTCGAGAACTGCGACTCGCCCCCCCCGCCGACCGCGAAGCCCCTCGG
CCGGCGGCCTGCCAAGGACCCTACCGAGAAGTCCTTCGCCCCGCGGTTCA
GCGGCGCTGTCGCCGGCGCCGCGGCTAGCGGAGCGGCAAGCGTTGTTGAC
GACCCCGATGACGTTGGCAGATTCGGCGCCTACTTGGAGCCGATATCCGG
GAGCGTCGAGGAGCATGCGGAGGAGGAGGAGGAGGAGGAGGATGACGATG
CAGGCAGTGATGATGACGGCGATAGCTTTGAGGCTCGGCGAGAGGCGGAG
CGGTCGGTGGTGGAGGGGGCCGCCGCCTCGGGCGCGGGGGGCGGGGAAGG
GAGAGCGGTGTCGGTGTCGAAGATGTTGCCGGCCGCGAGGCCGGGCGGCT
ACTCGGACGCACAGCTCGGGAGGTACCGGGCCATCGGTAGACTGATGGTC
AAGTGCTTGCTCGAGGGCAGAAGGATCGGCAGCCGCCTGGCGCCGAGCGT
GTTCAAGTTCATCACTGGGACGGACACGACGCTGCGGGACCTCCAGGACT
TCGACTCTCAAAGTTTTGAGAGCCTCAAGTGGATGCTGGCCAACACCGGC
ATGCGAGATATGGGCTTCGACTTTGAAGACGTTGGCCTCCCTGACAAGGG
CCCCGTCACGGACGGCAACAAGGCCGAGTACGTGTCGGCCAAGGCCCGAT
TAATCCTCGTCGGGTCGAGAAGGCCTGCCCTAGAGGCGCTCAAGGCTGGA
TTCGCCGAGGCTCTCCGAGACCTTTCCCCAGGGGCAGCGCTCTTCGTCGA
GTTGCTGTCGCACGCTGATTGGAGGGTCTTGCTGTGCGGGGAGGAGCACG
TCAGCGGACCGCAGGTGGTCGCGGTTCTCACCTGGTACGGGTTCCCGACT
CGCAGCGAGGTCCCCACTTGGGTCAAGTCTTTGCTCCTCTCCCTCCCCGA
AGACGCCCTGCTGCGTTTCGTGTCCTCGCCGTGTGTGTATGTGTGTTGGT
CCCTGATTTTTTATCGAAACCGCAGTTGGAGATCACCGTGCGCTGTCAGC
CCAGGTCGGCGGCGCTCCCCGCGGCCCACACGTGCTTCTTCCAGCTGGAC
GTTCCCGATTATGACAAGGAGTCCGTGCTGCGGCACAAGCTGCTGCAGGC
CGTCAACAACACCGCATCGTTTGACGTCGTGTGAAAAAGGATTCGGCGCT
GCGGCACGAGCCGCTCAGGCTGTCAATCATAACACCGCATCGTTTGACGT
CGCAAAAAAAAAAAAAACGTGTTGGCGCACAGATGCTGCAGGCTGTCAAC
AACATTGCATCGTTTGA
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