mRNA_Ecto-sp6_S_contig11.1278.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE) HSP 1 Score: 749 bits (1933), Expect = 3.610e-245 Identity = 408/442 (92.31%), Postives = 415/442 (93.89%), Query Frame = 3
Query: 3 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFVSSPCVYVC 1328
AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLV TDAAGSALRR+LKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCD PPPPTA+PLGRRPAKDPTEKSFAPRFSGAVAGAAA+GAASVVDDPDD RFGAYLEPISGS EEHAEXXXXXXXXXXXXXXXX AERSVVEGA GGGEGR VSVSKMLP ARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALF+ELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFP SEVPTWVKSLLLSLPEDAL RF+ ++VC
Sbjct: 1466 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVQTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDPPPPPTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANGAASVVDDPDDASRFGAYLEPISGSAEEHAEXXXXXXXXXXXXXXXXXXXXXX--AERSVVEGAXXXXXGGGEGRTVSVSKMLPTARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFLELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPASSEVPTWVKSLLLSLPEDALRRFL----IFVC 1901
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: D8LAX6_ECTSI (Outermembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX6_ECTSI) HSP 1 Score: 713 bits (1841), Expect = 5.290e-233 Identity = 388/430 (90.23%), Postives = 393/430 (91.40%), Query Frame = 3
Query: 3 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDAL 1292
AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSV+RLV TDAAGSALRR+LKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTA+PLGRRPAKDPTEKSFAPRFSGAVAGAAA+GAASVVDDPDDV RFGAYLEPISGSVEEH E XXXXXXXXX DSFEARREAERSVVEGAAASG EGRAVSVSKMLP ARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQ G P P W K +L LP L
Sbjct: 1345 AKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVIRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANGAASVVDDPDDVSRFGAYLEPISGSVEEHVEEXXXXXXXXX------DSFEARREAERSVVEGAAASGXXXXEGRAVSVSKMLPTARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQGGGGFPLVGVPGWQGGPHWGKVFVLLLPGRPL 1768
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A835YG59_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG59_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.100e-49 Identity = 155/448 (34.60%), Postives = 194/448 (43.30%), Query Frame = 3
Query: 9 YFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMR-LVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRD-----MGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFVSSPCVYVCWS 1334
YF+VS V RL +DGA+ EQ KL A+R LF VR+ ++ + P +W ++R + LV V+ L + DAA ALR ++I F GEAGVDEGG+LSE TL FE C +A+ LG +G+ G+ A+ A G+YL PAAR Y A L Y +GR + CL GRR+G LAPS +G FEDVG P G VT GN+A++V AK R ILV SR AL A AG L DLSP A + LL+ ADWRVLLCG+ HVS QVV+ L WY FP S VP W+ +LLLSL ED L RF+ V+VC S
Sbjct: 82 YFQVSFVDRLLEDGAVPEQHAKLAAMRALFARVREASRRAPPTRWMLRRGATTLVSDVLAALAALDAA--ALRAPVRIAFAGEAGVDEGGMLSEALTLFFEV-----------CARGMRISARQLGSS--------------NGSSGGSCAAAA-------------GSYL----------------------------------------------------------------PAARAH-YDPAALRAYELLGRAVALCLYSGRRVGGALAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGLSFEDVGDPGGGAVTAGNRAQFVQAKVRHILVASREAALAAAAAGVTRGLADLSPEAPSLMRLLAPADWRVLLCGDTHVSSAQVVSALRWYNFPPASGVPRWLPALLLSLGEDTLRRFL----VFVCGS 420
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A7S2WLZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLZ2_9STRA) HSP 1 Score: 189 bits (479), Expect = 1.160e-45 Identity = 149/466 (31.97%), Postives = 207/466 (44.42%), Query Frame = 3
Query: 9 YFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVR-------------------DEAKPSGPLKWTVKRDSRYLVPSVM-----RLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAKPLGRRPAKDPTEKSFAPRFSGAVAGAAASGAASVVDDPDDVGRFGAYLEPISGSVEEHAEXXXXXXXXXXXXXXXXDSFEARREAERSVVEGAAASGAGGGEGRAVSVSKMLPAARPGGYSDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFIT-GTDT---------TLRDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFV 1304
YF S+ RL G LL Q KLEAVR L R VR D +P P + + ++ LV V+ R + + AG A R LK+ FQGE G+DEGG+ +EM+ L FE ++ P GLFE C ASV +D +P +G + + R++E + V G+ LP G + YRA+GR +VKC EG+RIGS A ++KF+ G + L DL+ +D + SL W+L NTG +G DFED+ V+D NKAE+V KAR +LV R LEA+++GF +A+ DLSP A F+ LLS ADW VLLCGE++++ V L + GFP S++P W+ +L D L RF+
Sbjct: 1179 YFTASYSDRLIASGDLLRQNEKLEAVRSLIRQVRRDHSNRVERLTVQRRGLDLDTPRPDRPRRNSRQQADARLVWQVLEHFARRGGNAEQAGGA-RSHLKVEFQGEVGLDEGGLTAEMFRLFFEGLVSPEVGLFE-CS---------------------------------------ASVAQGTED-------HQPEAGEMAPPS-----------------------RQSEGAFVPGSMV---------------YLPKVGVVGQEE----HYRAVGRAVVKCFYEGKRIGSHFANCLYKFLAHGQEVKHAKGIEPRALDDLKQWDPEMGSSLDWLLRNTGAEHLGLDFEDIPGHSSQTVSDANKAEFVHMKARYVLVECRLAQLEAIRSGFWQAMMDLSPEATPFLRLLSSADWSVLLCGEDNLTPEAVTDCLEFRGFPKSSKIPKWLPQTILQFSPDNLRRFL 1554
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A6A5BKR9_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BKR9_NAEFO) HSP 1 Score: 86.3 bits (212), Expect = 1.790e-13 Identity = 53/203 (26.11%), Postives = 103/203 (50.74%), Query Frame = 3
Query: 735 SDAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTL-------------RDLQDFDSQSFESLKWMLANTGMRDMGFDFEDVGLPDKGPVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDALLRFV 1304
S A + AIG++++K + + R I +P +FKF++ T+ RDL+ FD SL+ +LA++G+ + DF ++ ++ VTD NK +Y K R +++ R L+ALK GF E++ +L + + S + +L CG +++ ++++L + GF + S P ++ ++ L +F+
Sbjct: 994 SSADPKIFEAIGKILIKAIYDQRVIPEVFSPFLFKFLSYKPNTMNDDLNFTKLVITFRDLELFDETMANSLRLLLAHSGVDEWCLDFSEIPGCEEKLVTDENKKDYALLKIRHVMLTQRLEQLKALKKGF-ESIEELQQSQLI---IFSWKELMLLCCGSDYIDAQSIISLLKFKGFSSNSSTPNYLIEVISHFSTVELRQFI 1192
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: G4Z201_PHYSP (HECT domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z201_PHYSP) HSP 1 Score: 84.0 bits (206), Expect = 3.790e-13 Identity = 56/161 (34.78%), Postives = 81/161 (50.31%), Query Frame = 3
Query: 744 QLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF----------EDVGLPDKG---PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEAL-RDLSPGAALFVELLSHADWRVLLCGEEHV 1184
QL A+GRL+ + LLEG + LAP + K + G T DL+DFD + +E+L+W+L N +G DF D+ L G PVTD NK +YV K + ++V S P L+A G E + RDL + L ++ LLCG + +
Sbjct: 222 QLLHLYAVGRLLGRALLEGSMMCFHLAPPLLKLMLGYPLTFSDLEDFDPEVYENLRWLLENENADALGLDFAVTVKDGDCYRDIELVPGGDAIPVTDSNKRDYVERKWQYLMVESVGPQLQAFLRGLYEIIPRDL-------LLLFDPEEFNFLLCGSDEI 375
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: SPKUL_DICDI (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SPKUL_DICDI) HSP 1 Score: 81.3 bits (199), Expect = 6.960e-12 Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 3
Query: 756 YRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRD-MGFDFEDVGLPDKG---PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRSEVPTWVKSLLLSLPEDAL---LRFVS 1307
++ +G++ +K +++G+ I S FK++ G LRDL+ +D Q +S K +L + + + FE GL + G PVTD NK E++ +LVG R+ LEA K+GF ++ L+ ALF S + ++L+CG V + + GFP S P + + + +D + LRFV+
Sbjct: 1641 FKILGKIFLKSIIDGKPIPDCFPTSFFKYLLGVKVNLRDLEIYDPQLAQSFKKVLVLDNIEEYLSTTFE--GLIEGGESIPVTDLNKEEFIQRNIERVLVGCRQSKLEAFKSGFM-SIDSLNAHFALF----SPTELQLLMCGNTLVDSSVLQKNFKFIGFPDTSSTPKDFRRAVDEMNQDEIRLFLRFVT 1824
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A8K1C6R9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6R9_PYTOL) HSP 1 Score: 74.7 bits (182), Expect = 4.210e-10 Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = 3
Query: 738 DAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF---EDVG--------LPDKG--PVTDGNKAEYVSAKARLILVGSRRPALEALKAGF 1085
D L + + GRL+ + LEG G A + K I G + DL+ FD ++++ LKW+L N G+ + DF E VG LPD G VTD NK +YV K + +L GS L AL GF
Sbjct: 335 DNHLAYFFSTGRLLGRAFLEGYVTGFHFALPLLKIILGLPVSFSDLEFFDPEAYQGLKWLLDNNGVEHLSLDFTVCEQVGDEMVIVELLPDGGNIEVTDENKRQYVDLKLKYLLFGSVSSQLYALLQGF 463
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: A0A0W8CAX7_PHYNI (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CAX7_PHYNI) HSP 1 Score: 70.9 bits (172), Expect = 5.170e-9 Identity = 60/218 (27.52%), Postives = 91/218 (41.74%), Query Frame = 3
Query: 738 DAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF---EDVGLPDKG-----------PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRS------EVPTWVKSLLLSLPED----ALLRFVSSPCV 1319
+ L Y A GRL+ + LLEG G LA + K I G T D++ D +++ SL+W++ N G+ D+G DF E + +K VTD NK EY+ + R +L S + A F + L ++ P L + ++ LLCG + V W S V W ++ +P + LL S CV
Sbjct: 212 EDHLAYYFATGRLIGRALLEGGIWGFHLALPLLKVILGVPVTFADMEFLDPETYRSLRWLMDNDGVDDLGLDFSLTEQINESEKIVVDLIPNGRNIAVTDANKREYLDRRFRYVLFESVADQMHA----FLKGLYEVIPREMLLI--FDPEEFDYLLCGSPEID------VTDWEAHTVMSPNLEGANVTRWFWEIVRQMPNEYRRRLLLFATGSACV 417
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Match: W2RGN4_PHYPN (HECT domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2RGN4_PHYPN) HSP 1 Score: 70.9 bits (172), Expect = 7.270e-9 Identity = 60/218 (27.52%), Postives = 91/218 (41.74%), Query Frame = 3
Query: 738 DAQLGRYRAIGRLMVKCLLEGRRIGSRLAPSVFKFITGTDTTLRDLQDFDSQSFESLKWMLANTGMRDMGFDF---EDVGLPDKG-----------PVTDGNKAEYVSAKARLILVGSRRPALEALKAGFAEALRDLSPGAALFVELLSHADWRVLLCGEEHVSGPQVVAVLTWYGFPTRS------EVPTWVKSLLLSLPED----ALLRFVSSPCV 1319
+ L Y A GRL+ + LLEG G LA + K I G T D++ D +++ SL+W++ N G+ D+G DF E + +K VTD NK EY+ + R +L S + A F + L ++ P L + ++ LLCG + V W S V W ++ +P + LL S CV
Sbjct: 402 EDHLAYYFATGRLIGRALLEGGIWGFHLALPLLKVILGVPVTFADMEFLDPETYRSLRWLMDNDGVDDLGLDFSLTEQINESEKIVVDLIPNGRNIAVTDANKREYLDRRFRYVLFESVADQMHA----FLKGLYEVIPREMLLI--FDPEEFDYLLCGSPEID------VTDWEAHTVMSPNLEGANVTRWFWEIVRQMPNEYRRRLLLFATGSACV 607 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig11.1278.1 >prot_Ecto-sp6_S_contig11.1278.1 ID=prot_Ecto-sp6_S_contig11.1278.1|Name=mRNA_Ecto-sp6_S_contig11.1278.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=489bp MRLVSTDAAGSALRRSLKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGback to top mRNA from alignment at Ecto-sp6_S_contig11:954135..959876- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig11.1278.1 ID=mRNA_Ecto-sp6_S_contig11.1278.1|Name=mRNA_Ecto-sp6_S_contig11.1278.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5742bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:954135..959876- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:954135..959876- >mRNA_Ecto-sp6_S_contig11.1278.1 ID=mRNA_Ecto-sp6_S_contig11.1278.1|Name=mRNA_Ecto-sp6_S_contig11.1278.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1467bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:954135..959876- (Ectocarpus species6 EcLAC_371)back to top |