mRNA_Ecto-sp6_S_contig11.1275.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1275.1
Unique NamemRNA_Ecto-sp6_S_contig11.1275.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1275.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 417 bits (1073), Expect = 3.740e-147
Identity = 212/220 (96.36%), Postives = 212/220 (96.36%), Query Frame = 1 
Query:   19 RQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRXXXXECRRLVVGLAVSQRWSDPGTRRGKTSTHEQQRELGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFFSGGGGRAPCHGGAVAAPPVVRECRAVHLDEAAILKKIYEFL 678
            RQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRR XX ECRRLVVGLAVSQR SDPGTRRGKTSTHEQQR  GGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGF SGGGGRAPCHGGAVAAP VVRECRAVHLDEAAIL KIYEFL
Sbjct:    2 RQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of mRNA_Ecto-sp6_S_contig11.1275.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 1.390e-115
Identity = 180/213 (84.51%), Postives = 182/213 (85.45%), Query Frame = 1 
Query:   88 MDPHTRLPGYTCSTMLGVTQV---------------WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRXXXXECRRLVVGLAVSQRWSDPGTRRGKTSTHEQQRELGGS-RSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFFSGGGGRAPCHGGAVAAPPVVRECRAVHLDEAAILKKIYEFL 678
            MDPHTRLPGYTCSTMLGVTQV               WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKE     XXXXECRRLVVGLAVSQR SDPGTRRGKT THEQQR  GGS RSGMSRSSSRTWSLPPLT+A HLKGGEEDQG  SGGG RAPCHGGAVAAPP VRECRAVHLDEAAIL K+YEFL
Sbjct:    1 MDPHTRLPGYTCSTMLGVTQVIDGSHQATSDLAPDVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRRSDPGTRRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATHLKGGEEDQGVSSGGGWRAPCHGGAVAAPPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI3.740e-14796.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE1.390e-11584.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:939361..942180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006110.1
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.8590617-CDS-Ecto-sp6_S_contig11:939360..9398201682348781.8590617-CDS-Ecto-sp6_S_contig11:939360..939820Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 939361..939820 -
1682348781.866969-CDS-Ecto-sp6_S_contig11:940118..9401921682348781.866969-CDS-Ecto-sp6_S_contig11:940118..940192Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 940119..940192 -
1682348781.874266-CDS-Ecto-sp6_S_contig11:942033..9421801682348781.874266-CDS-Ecto-sp6_S_contig11:942033..942180Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 942034..942180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1275.1prot_Ecto-sp6_S_contig11.1275.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 939361..942180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1275.1

>prot_Ecto-sp6_S_contig11.1275.1 ID=prot_Ecto-sp6_S_contig11.1275.1|Name=mRNA_Ecto-sp6_S_contig11.1275.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=227bp
MVCTARRQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQV
WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEA
MEAAKEAERRRARRRECRRLVVGLAVSQRWSDPGTRRGKTSTHEQQRELG
GSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFFSGGGGRAPCHGGAVA
APPVVRECRAVHLDEAAILKKIYEFL*
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mRNA from alignment at Ecto-sp6_S_contig11:939361..942180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1275.1 ID=mRNA_Ecto-sp6_S_contig11.1275.1|Name=mRNA_Ecto-sp6_S_contig11.1275.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2820bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:939361..942180- (Ectocarpus species6 EcLAC_371)
ATGGTGTGTACAGCGAGGAGACAAGCTGGCAGCGCCGGCCGTGTCCCGGA
TCCCAGCGAGGTGTTTCAGACACGGAGAGGGGGAGCGATGGACCCGCACA
CACGGCTACCGGGCTACACGTGCTCGACGATGCTGGGCGTCACGCAGGTG
ATTGATGGCTCACACTAAGCGAGAACTGACCGCACCGCACCCCGTATAGC
TTGAAGGGAGCATGTGCGTCCCTGTACAACACGTCCTGCACACACGCTGT
CACAGCAGCCCCCACCGCATCAAAACTCGATCCTGCGCGTATCCGTTACA
CAGCAAGTTACGCAGGTGCAGAGCACGACTGCGACTGCTTTTATGCATAT
GATGATGTTATTTTGGGTGTCTGCGGAAAGGGTGGTCGGCGATGCAGGGA
CTCGGACCTGCAGGTTGAAAAGTCGAGAGTCGAGAGGCATGACGACAGAA
GGTCACACTGCTGCTGTTGCTGCTGCTGTGGGTTTGACAGTTTGGACGCG
GAAGACACATTTTTTTCGTATTTTTTTTTTTTTTTTCTTAGTATGACACA
ACGAAACATTTTATTGTTTGGACGCGGAAGACACATTTTTTTCTTAATTT
TATTGTTTAGGCAGCAAGAGTCTGCACGAAAGGACTGGCCTCTCCTCTTC
GACAGCAGTCTCTTGAGTGTGTTGGTCTCTATGTACAGCAGTCGTACAGC
AGTAGTGAGGATGCTGCTGTACGACAAGAGCGACGACGATGGCATCGACC
TAGTGCATCGCGATTTCTTCTGATCATGACGATCCCGTTCCTTCGCGCAC
GACGGGGACGTTACATGTTGATCTGATCCGCCCATTAGTTCAACCTCGCA
AAAAGCAGGTGGGGAATTTATTGTGTCGGCCGATACTCAACGTTGCCTCG
CGTGATGTGTCGAAAAGCGGACGAAAATGCATCACTTTCCGCAGTTGAAG
CAGTCTACCGTATGTAAGGATAGCGCCACACCGATGTGACAAAAGCTTGA
ATATGCTGCCACTTCGTGATGAACAACAGGAGAAAACGGTTACCGCGTAC
GCGTAGACATGTACAAGGTAGAGTTGAAGCTCGAGCCCCTTGATCATCTT
ACTTCTTGACATGATCGCTGCACTAGCGGGCGCTTACTAGAAGCACTGCT
GTGGGCCGATGCTTAAGATCTCATCTTGTCGCCAACATTGAGCGCAGGTT
ACTGCCGTACTCTGTTTGCATATCGGCAGGGCTTAATTTCGTGTGGTGCT
AGAGGCTGGGCCCAGTTGCTTGGGATTCTCTCAAATTTCAGAAAACCTGA
ACCTCCGGTTCGTAATACTTGCATCCTCCCGCTACTGCAAGAAGAACAGG
ATTGGTATTGATACCTTGGCAAGTGCACACGTGCCGAAGGTTTGGATGCT
AAGGGTGCTAACATAGGGCAGGCAGAACAAGTTATGTTGGGAGTTGGAGG
ACGAGGTGTTGCAGAAAAGGACTGAGTTCCAGCGGTTTCGGATGGACACA
CATACAAGGAGGTGCCCAAAAAATATTAATTCCCTCGGTAGCGGCGACGA
GTGTTGTGCCACCTCGCCAAGCCGTTTGTTCCACAAGACGCCGATTGCGA
GTGCAAGTATCGACAAAGAAGACCCCTCTCCTCAAGCCCCATGCGAGAAA
CAAATCGCCACCGCGAAATACTACGACATCGGAGAAAAATTGTAGGAGAC
CAAAAGTCGCCACAGAGCCAAAAATAATACTCCAAGATCGGTCGGTAACG
GCACCAGGCGATGACACGGATGCAAGGGACAAGGGCATCTCCAGTCAATT
ATCGAGGCACACGCGTGGCGAGCGCGAGAATTCCGGGGGCTGCTTCACAA
GTATGTGGTGTAGGTAAGGGCCGATGCGAGGTCAATGGCCAAACGGCAAA
GGAAAAACTACAGTCGCGTGACCCCCCTTGTGTGTGCTGGCTGCAACTGT
TTGTACCTGGGCCGGAACTCTACAATTGCTGCTGTCAGGTGTGGTTCACA
GCACATCACGTGGGCCACGTCCTGAAAACGCTGCGATCGGGCCGGTTGGA
CGACCTTCACAGGTAGGTGCAGCTGTATGAAGTTATGAACCATTATGAAC
CATTAAATAAAGAGGAAGTACATTCCATTACGATTTTCCGGAACCCCTCT
GAGGTGCTTTGTGCTGCGAGCCGGTTGGACTGCATCCTTTACCACCCGCC
TATGTTCATCGCCCAAAACCACGACTTGCCCACGACATCCGCAGGAAACC
TCACAGGCAGTTAGAATAGAATACACGTTCGCAAGCATCCAATTATCTCG
AGAAGGCTACGCCCTCTCGACGGCCTATTCAACCCCCCCCCCCCCCGTCC
TGTCCCGCAGGAGAATGAAGCGCAACCCACACGTGCTGGACGCCCGCGTT
TGCCGAGCGGTCATCTGGTGGAGCATTCTTGCGGAGGCGATGGAGGCCGC
GAAGGAGGCTGAGAGGCGGCGAGCCAGGCGGCGAGAATGCCGCCGGTTGG
TGGTCGGGCTCGCCGTCTCGCAGCGGTGGAGCGACCCCGGCACTCGACGA
GGCAAAACCAGCACGCACGAACAGCAACGAGAATTGGGTGGGTCCCGATC
GGGCATGTCCCGCTCGTCCTCTCGCACGTGGTCACTCCCACCATTAACGG
AAGCGATTCACCTCAAGGGCGGCGAGGAAGACCAAGGGTTTTTCAGCGGT
GGCGGAGGGCGTGCTCCCTGCCACGGGGGGGCGGTGGCGGCGCCGCCGGT
GGTTCGGGAGTGTCGCGCGGTTCACCTTGATGAGGCGGCTATTCTCAAAA
AAATCTACGAGTTTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:939361..942180-

>mRNA_Ecto-sp6_S_contig11.1275.1 ID=mRNA_Ecto-sp6_S_contig11.1275.1|Name=mRNA_Ecto-sp6_S_contig11.1275.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:939361..942180- (Ectocarpus species6 EcLAC_371)
ATGGTGTGTACAGCGAGGAGACAAGCTGGCAGCGCCGGCCGTGTCCCGGA
TCCCAGCGAGGTGTTTCAGACACGGAGAGGGGGAGCGATGGACCCGCACA
CACGGCTACCGGGCTACACGTGCTCGACGATGCTGGGCGTCACGCAGGTG
TGGTTCACAGCACATCACGTGGGCCACGTCCTGAAAACGCTGCGATCGGG
CCGGTTGGACGACCTTCACAGGAGAATGAAGCGCAACCCACACGTGCTGG
ACGCCCGCGTTTGCCGAGCGGTCATCTGGTGGAGCATTCTTGCGGAGGCG
ATGGAGGCCGCGAAGGAGGCTGAGAGGCGGCGAGCCAGGCGGCGAGAATG
CCGCCGGTTGGTGGTCGGGCTCGCCGTCTCGCAGCGGTGGAGCGACCCCG
GCACTCGACGAGGCAAAACCAGCACGCACGAACAGCAACGAGAATTGGGT
GGGTCCCGATCGGGCATGTCCCGCTCGTCCTCTCGCACGTGGTCACTCCC
ACCATTAACGGAAGCGATTCACCTCAAGGGCGGCGAGGAAGACCAAGGGT
TTTTCAGCGGTGGCGGAGGGCGTGCTCCCTGCCACGGGGGGGCGGTGGCG
GCGCCGCCGGTGGTTCGGGAGTGTCGCGCGGTTCACCTTGATGAGGCGGC
TATTCTCAAAAAAATCTACGAGTTTTTGTGA
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