mRNA_Ecto-sp6_S_contig11.1265.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1265.1
Unique NamemRNA_Ecto-sp6_S_contig11.1265.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1265.1 vs. uniprot
Match: D8LAW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW4_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 3.230e-92
Identity = 133/137 (97.08%), Postives = 133/137 (97.08%), Query Frame = 1 
Query:    1 MSTIPSFLAGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQLGRPKGERAGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGGATEGKAEGGDEPRDS 411
            MSTIPSFL GLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQ GRPKGER GCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRG ATEGKAEGGDEPRDS
Sbjct:    1 MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW4_ECTSI3.230e-9297.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:875658..876994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size414
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.1506007-CDS-Ecto-sp6_S_contig11:875657..8759211682348781.1506007-CDS-Ecto-sp6_S_contig11:875657..875921Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 875658..875921 -
1682348781.1604443-CDS-Ecto-sp6_S_contig11:876844..8769941682348781.1604443-CDS-Ecto-sp6_S_contig11:876844..876994Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 876845..876994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1265.1prot_Ecto-sp6_S_contig11.1265.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 875658..876994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1265.1

>prot_Ecto-sp6_S_contig11.1265.1 ID=prot_Ecto-sp6_S_contig11.1265.1|Name=mRNA_Ecto-sp6_S_contig11.1265.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=138bp
MSTIPSFLAGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRK
MPRQLGRPKGERAGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDART
KWNAAVLRCSDTVFSALYGRGGATEGKAEGGDEPRDS*
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mRNA from alignment at Ecto-sp6_S_contig11:875658..876994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1265.1 ID=mRNA_Ecto-sp6_S_contig11.1265.1|Name=mRNA_Ecto-sp6_S_contig11.1265.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1337bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:875658..876994- (Ectocarpus species6 EcLAC_371)
ATGTCTACCATCCCATCATTTCTTGCGGGGCTGGTTGCCTCTGGTGTGGG
CTACGCGTACCTGTCGCGCGATCTGGTCACCTCTAGGAATAAGCTAATGT
CGAAGCACTTCAAGGCCGACGGGGTCGAGCCCTACTACCCTGTGCGGAAG
GTGATGTCCAGTACTGCTGTAGTGCCTTAGGGTGCCACCCTACTTCACGG
GGTTGGATGGAGTGAACGTGTAGTAAGTTTGACCGTATGGTTCCAACGGC
AGTATCATACACCTGGAGTTTTTGCTGTTGTCGTTTGCATTCTGGTGTGT
GTAGAGGACATATCATTTATGTATGGAGTACAGTATCAATGTACTCAAAC
GTGTCCGCGTGTACATACTCTGTAGGGGCAAGAACTTGGAAGGCACTGCT
GCATATGGTCCGGTACATCGACACTCTCAGAATCTGAAGCACACTGCCTG
TGGGCCCCCATTAGGAAAATAATCAACAACCGCGGCAACACTAGCATGTG
GCGACTATGGTCATGATCATGTGGGATTTTAACGACAAACAACAGTCTGC
ACTTCCAAGTGTTTTTAGCCGGCTGAATACTCCATACTCGATGAATACTG
GCACCCCCATCAAGCTTGACGACCAGCAAGTTCCCACACCAGTTTCAAAT
GGACCTGGCCTGCTCCACTAGTCGGTCAACACGTCACGATGCTGGCGATG
TAGCTACTGTGTGAGCGCCTGAACTACTTCAAAGTTAAGGTTTGTGATGA
TGTATTTGTACACTGTAGGGTGCTCGATCTTCACTCGTCTTACTCGCACC
CTCAACCGACCGTGTCGACGAAGTCGGAGTGTCCACCAATGTTTTGGCAT
GCATTTCCCATGCATAGGACAGGCAGGTCACATGTTTGCACCCCTCTAAC
TTCAGGGCCCTACAACAACTGCATGTACCCTGCAACACCTGACAACAAAG
ACGATCATTCCTACACCTAATATTCACGTCCTCTACTCCAGCTTGTGACC
AGTTTTCCTGTTTGTCTTGCGATCCTGGCCCATTCCCTCGGTGGCCCTCA
AAAAACATGTGTTGCCGTGCCAGATGCCTCGCCAGCTCGGGAGACCAAAA
GGCGAGCGCGCCGGTTGCCCACGCGGCTCTAGCTTCAATTCGGAAACGAG
CAGGGGGGTTGTCAGTGGCTTACCGGAACCCGCGCCAGCGGGTGAGCATC
ACCTCGTCACGGATGCCCGCACCAAGTGGAACGCGGCTGTTTTGCGATGC
TCCGATACGGTATTCAGCGCCTTGTATGGCCGCGGAGGTGCGACGGAGGG
CAAGGCGGAGGGTGGTGACGAACCACGGGATTCATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:875658..876994-

>mRNA_Ecto-sp6_S_contig11.1265.1 ID=mRNA_Ecto-sp6_S_contig11.1265.1|Name=mRNA_Ecto-sp6_S_contig11.1265.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:875658..876994- (Ectocarpus species6 EcLAC_371)
ATGTCTACCATCCCATCATTTCTTGCGGGGCTGGTTGCCTCTGGTGTGGG
CTACGCGTACCTGTCGCGCGATCTGGTCACCTCTAGGAATAAGCTAATGT
CGAAGCACTTCAAGGCCGACGGGGTCGAGCCCTACTACCCTGTGCGGAAG
ATGCCTCGCCAGCTCGGGAGACCAAAAGGCGAGCGCGCCGGTTGCCCACG
CGGCTCTAGCTTCAATTCGGAAACGAGCAGGGGGGTTGTCAGTGGCTTAC
CGGAACCCGCGCCAGCGGGTGAGCATCACCTCGTCACGGATGCCCGCACC
AAGTGGAACGCGGCTGTTTTGCGATGCTCCGATACGGTATTCAGCGCCTT
GTATGGCCGCGGAGGTGCGACGGAGGGCAAGGCGGAGGGTGGTGACGAAC
CACGGGATTCATGA
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