mRNA_Ecto-sp6_S_contig11.1264.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1264.1
Unique NamemRNA_Ecto-sp6_S_contig11.1264.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A6H5JYC8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.510e-47
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 2
Query:  155 MANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAPQADSVVSLAP 415
            MANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDK APQADSVVSLAP
Sbjct:    1 MANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKAAPQADSVVSLAP 87          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: D8LAW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW3_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.210e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 2
Query:  227 GIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAPQADSVVSLAP 415
            GIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAPQADSVVSLAP
Sbjct:   56 GIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAPQADSVVSLAP 118          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A836CN55_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN55_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.220e-17
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  164 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLAL 349
            LV++WL+GIGLGYA+P F  QG+  P+ LS L + +F  LG+++  DRKKLFYL+QRV+LA+
Sbjct:    3 LVETWLSGIGLGYAIPTFKAQGVIVPEKLSRLSLDEFEGLGVTNTEDRKKLFYLVQRVRLAV 64          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A1Z5KT23_FISSO (Kinesin-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT23_FISSO)

HSP 1 Score: 83.2 bits (204), Expect = 6.900e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  164 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAPQADSVVS 406
            LV +WLNGIGL YAVP F   GID+P  L++LDV  F  LG+ D  DR+KLF+L+QR+K+A  +     D+T+ + DSV++
Sbjct:    3 LVATWLNGIGLSYAVPTFHAAGIDNPAALAQLDVSHFEALGVKDGEDRRKLFFLVQRIKMACDKS----DQTSSEVDSVLA 79          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A448Z7E2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7E2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.880e-14
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  164 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAP 385
            LV +WLNGIGLG  VP F   GI SP  L++LDV  F  LG+++ +DR+KLFYL+QR+K+A+ +    E    P
Sbjct:    3 LVSTWLNGIGLGSVVPTFEAAGIVSPSHLADLDVAYFESLGVTNPDDRRKLFYLVQRIKMAVHKKXKVEGSKTP 76          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A7S1ZZ94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZ94_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-12
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  164 LVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVK 340
            LV +WLNGIGLG+A+P F   GI +P  L+EL++  + +LG+   N+RKKLFYL+Q+ K
Sbjct:   15 LVTTWLNGIGLGHAIPAFRAAGIVTPTDLAELELHMYEDLGVKSSNERKKLFYLVQKKK 73          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A7S1GDQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDQ3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.240e-10
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  143 SGSTMANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARG 358
            SG+   +++  WL+ IGLGY++P+F   GI+SP  L +L   D+  +G+++ +DRK+LF L+ RV+ A  +G
Sbjct:   11 SGAAGGSIIYQWLDRIGLGYSIPMFQALGINSPQSLMKLTFEDYDAVGVTEFDDRKRLFELVHRVREAAKKG 82          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: A0A7S2RLA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.720e-9
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  146 GSTMANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAEDKTAPQADS 397
            G++  + V ++L  +GL YAVP F  +GI S   +S L V  F ELGI D  DR+KL++ + RVK+A+   +  ED T+ +ADS
Sbjct:   20 GTSSEDHVTAFLVKLGLQYAVPRFKERGITSLPKISALTVEHFDELGIVDVEDRRKLWFFVHRVKMAV---QGVEDFTSGRADS 100          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: K0T2T7_THAOC (SAM domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2T7_THAOC)

HSP 1 Score: 60.1 bits (144), Expect = 4.750e-8
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  143 SGSTMANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARGRAAED 373
            S S   +LV SWL+ I LG+A   F   GI +P  L+EL++V +  LG+     RK+LFYL+QRV+  L      E+
Sbjct:    5 SPSRPPSLVASWLSSIDLGHAAANFEMAGIVTPRSLAELELVHYGPLGVKSAEHRKRLFYLVQRVRAELEESGGGEE 81          
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Match: K0THC1_THAOC (SAM domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THC1_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 5.180e-8
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  143 SGSTMANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQNDRKKLFYLIQRVKLALARG 358
            S S   +LV SWL+ I LG+A   F   GI +P  L+EL++V +  LG+     RK+LFYL+QRV+  L  G
Sbjct:   49 SPSRPPSLVASWLSSIDLGHAAANFEMAGIVTPRSLAELELVHYGPLGVKSAEHRKRLFYLVQRVRAELEEG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JYC8_9PHAE3.510e-4798.85SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LAW3_ECTSI1.210e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN55_9STRA9.220e-1756.45SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1Z5KT23_FISSO6.900e-1650.62Kinesin-like protein n=2 Tax=Fistulifera solaris T... [more]
A0A448Z7E2_9STRA2.880e-1450.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1ZZ94_9STRA2.100e-1252.54Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1GDQ3_9STRA1.240e-1040.28Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2RLA9_9STRA3.720e-942.86Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K0T2T7_THAOC4.750e-841.56SAM domain-containing protein (Fragment) n=1 Tax=T... [more]
K0THC1_THAOC5.180e-844.44SAM domain-containing protein (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:872716..873948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size416
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.1068385-CDS-Ecto-sp6_S_contig11:872715..8728171682348781.1068385-CDS-Ecto-sp6_S_contig11:872715..872817Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 872716..872817 -
1682348781.115662-CDS-Ecto-sp6_S_contig11:873635..8737941682348781.115662-CDS-Ecto-sp6_S_contig11:873635..873794Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 873636..873794 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.1242514-UTR-Ecto-sp6_S_contig11:873794..8739481682348781.1242514-UTR-Ecto-sp6_S_contig11:873794..873948Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 873795..873948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1264.1prot_Ecto-sp6_S_contig11.1264.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 872716..873794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1264.1

>prot_Ecto-sp6_S_contig11.1264.1 ID=prot_Ecto-sp6_S_contig11.1264.1|Name=mRNA_Ecto-sp6_S_contig11.1264.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=87bp
MANLVDSWLNGIGLGYAVPIFAGQGIDSPDMLSELDVVDFPELGISDQND
RKKLFYLIQRVKLALARGRAAEDKTAPQADSVVSLAP
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mRNA from alignment at Ecto-sp6_S_contig11:872716..873948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1264.1 ID=mRNA_Ecto-sp6_S_contig11.1264.1|Name=mRNA_Ecto-sp6_S_contig11.1264.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1233bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:872716..873948- (Ectocarpus species6 EcLAC_371)
GTCAAGTATCGCTGGGATCGCTGGCGTTACCGACGACCTCTGGTGAGGAA TCAAACGGAAGAGAGGAGCAGCATCAAGAACGTAACGGGGGCCCCCACAT CATCGAATTTGGCGCCAACGGGACAGATATACCAGTAGAGACAGCGGGAG TACTATGGCCAATCTCGTGGATAGCTGGTTGAACGGGATCGGTCTGGGCT ATGCTGTGCCCATCTTCGCCGGGCAGGGCATCGACTCGCCGGACATGCTC TCCGAGCTAGACGTGGTTGACTTTCCGGAGCTTGGAATCTCGGACCAAAA CGATCGCAAGAAGGTATGCAGCAGCCGAGACTACACGCGTACAGCAGTCA CACACGAGGCTGGTTGATTGTATCACCTCAGCGCCAAAAGGAAACGGACT CCCGTGACTATGCCCATCAGCGTGGCTTGTTGTGTCTCTTGATCGATCTC TGCGGCTGGTATGGATCCAGTTAATGCAGCTCTGATTGTCTCAGAGCCCG CAATAGCGGTGTACAACATGACATCAATAGCTGATGGTAGCCCCTGCGTA TGTAGCATACCATGTCGAATGTCCAACCGCCTGTTTCACCGAGAAGACCT AGACTACAGCCAGTAACAAACGGAAGACAGCAGTGAATAAGCAGGCTAAC GGGCAGTTAGGGCGCCTACCTCTGTTCCATGGAGCTGCACTAGGTACAAC ATGCCTTCATCTGCCACGTAGTCAATGGGCGTGCGGCCATATCACGAGCT TCATCGCAAGACATTGTTGTAGCAGCAGACATACATGCTGCCGTTCGAGA TTTTAATACGCTGGGTGTGCGAGTACGTGGCATGCATAGCAACGTTGTTG ACCGACAGATGTCATGACCACGCTTGTATTTTAGACCGATCTCATGCTGC TTTTGTGTCCCTTTTCCCAAATGCCCGTTCGACATGCTGTCTCTTTTGGG ACATTTATGTGGGATTTTTGATGCGCTACATGTGCCTTCACGTCACTTGC CTATGTTGTTGACCGACCAGGAGATACACGATGGATGTTACTGCTACACT GCTATGTTCCTTTTCCCGCATGCCTCGCCGACATGGACACGCATCCTTCC TTCACTGCTGTTCTCCACATCCGTCTCCCAGCTCTTCTACCTGATCCAGA GAGTAAAGCTGGCGCTTGCGCGGGGCCGGGCCGCCGAAGACAAAACCGCG CCGCAGGCAGATTCCGTGGTTTCTTTAGCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:872716..873948-

>mRNA_Ecto-sp6_S_contig11.1264.1 ID=mRNA_Ecto-sp6_S_contig11.1264.1|Name=mRNA_Ecto-sp6_S_contig11.1264.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:872716..873948- (Ectocarpus species6 EcLAC_371)
ATGGCCAATCTCGTGGATAGCTGGTTGAACGGGATCGGTCTGGGCTATGC
TGTGCCCATCTTCGCCGGGCAGGGCATCGACTCGCCGGACATGCTCTCCG
AGCTAGACGTGGTTGACTTTCCGGAGCTTGGAATCTCGGACCAAAACGAT
CGCAAGAAGCTCTTCTACCTGATCCAGAGAGTAAAGCTGGCGCTTGCGCG
GGGCCGGGCCGCCGAAGACAAAACCGCGCCGCAGGCAGATTCCGTGGTTT
CTTTAGCCCCC
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