mRNA_Ecto-sp6_S_contig11.1262.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1262.1
Unique NamemRNA_Ecto-sp6_S_contig11.1262.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1262.1 vs. uniprot
Match: D8LAW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW1_ECTSI)

HSP 1 Score: 548 bits (1412), Expect = 7.200e-187
Identity = 307/324 (94.75%), Postives = 311/324 (95.99%), Query Frame = 3 
Query: 1431 GGGCSNDEVAADGIVHESENTNKRT--SKSGNGAVEEEGYAKDRQSAAELTERNYFRRSHAPCVAGQSTLSSPAKMETNSARCSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGTGQRDVSSRLLHTTPAEALYKEDRVGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXXGGMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEEE 2396
            GG CSND+VAADGIVHESENTNK T  SKSGNG VEEEGYAKDRQS AEL ERN  RRSHAPCVAGQSTLSSPAK+ETNSAR SSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIG GQRDVSSRLLHTTPAEALYKEDR+GRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXX  MEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAE+E
Sbjct:   66 GGVCSNDKVAADGIVHESENTNKGTNISKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPAKLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXXXXMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEDE 389
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW1_ECTSI7.200e-18794.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:863455..866944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2446
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006220.1
Cds size1473
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348780.9858038-UTR-Ecto-sp6_S_contig11:863454..8635881682348780.9858038-UTR-Ecto-sp6_S_contig11:863454..863588Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 863455..863588 -
1682348780.9956348-UTR-Ecto-sp6_S_contig11:864199..8650381682348780.9956348-UTR-Ecto-sp6_S_contig11:864199..865038Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 864200..865038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.0052397-CDS-Ecto-sp6_S_contig11:865038..8657941682348781.0052397-CDS-Ecto-sp6_S_contig11:865038..865794Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 865039..865794 -
1682348781.014746-CDS-Ecto-sp6_S_contig11:866227..8669441682348781.014746-CDS-Ecto-sp6_S_contig11:866227..866944Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 866228..866944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1262.1prot_Ecto-sp6_S_contig11.1262.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 865039..866944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1262.1

>prot_Ecto-sp6_S_contig11.1262.1 ID=prot_Ecto-sp6_S_contig11.1262.1|Name=mRNA_Ecto-sp6_S_contig11.1262.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=491bp
MPHSSSEETQDIPEQQPHGCTEAHKIHAVTLPAKVPGPGPGDYNVTPPAI
GQNGHAVRFGYPGLGRKYPPRTPDQPRAEIPCTYAEPAHVSSLNNQLTSD
RATSYAVFFGAAPRFQGKCSVSNQAKDVLHVAHAKPTGRRSPTVAAASGS
TTTTTSPSGPGPGDYDVAHHAVGQNGPAITFGDPALGGKRYPPRTPDQPR
AEVPCTYAEPGHMSCLRHQVTSDRPTSPAVFFGGAPRFQQERRKTWEARI
DAATQRKPAGQTRAKSSSALRPGNTLPQPISTTDSRRRKKRRKRRWGGPR
IFRRGNYGWLTSCAEPRQWEPQLKLLEDKGKGSGGHPATPISDVSRTWSL
TEKNAPRPVLRRGERHNQSEYNPQHRNLPREKDGYPGPKYDRPPGAFGRT
GGGGGTVAPSASMSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRL
EGCSFEKMYGSLETLASWGSLGASRAGGGGAVTTRLLRTV*
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mRNA from alignment at Ecto-sp6_S_contig11:863455..866944-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1262.1 ID=mRNA_Ecto-sp6_S_contig11.1262.1|Name=mRNA_Ecto-sp6_S_contig11.1262.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3490bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:863455..866944- (Ectocarpus species6 EcLAC_371)
ATGCCTCATTCTTCTTCCGAAGAAACACAGGACATCCCTGAACAACAGCC
ACACGGCTGCACGGAGGCACATAAAATTCATGCCGTCACACTGCCGGCGA
AGGTCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCTGCAATT
GGGCAGAACGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGGGAGAAA
GTACCCGCCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGTGCACCT
ACGCCGAGCCCGCGCACGTTTCTAGCCTCAACAATCAGTTGACCTCTGAT
CGGGCCACGTCTTACGCGGTGTTCTTCGGTGCGGCACCTCGTTTCCAGGG
GAAGTGTTCAGTTTCAAATCAAGCCAAAGATGTGCTTCACGTTGCTCACG
CCAAGCCAACGGGACGACGAAGCCCGACGGTGGCCGCCGCCAGCGGTTCT
ACTACAACAACTACAAGCCCGAGCGGACCTGGTCCCGGGGACTACGATGT
CGCACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCGGCGACC
CCGCCCTGGGGGGGAAAAGGTACCCGCCGAGGACCCCAGACCAACCGCGA
GCCGAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATGTCTTGCCTGCG
CCACCAAGTGACCTCGGATCGACCCACGTCTCCCGCGGTCTTCTTTGGCG
GAGCACCTCGTTTCCAGGTGCGGTGCGGTGATGGCCTTTCGAAAATCTCG
CCAGAAATTTGAACAGCTGGGCTTGAGCGAATGAGGCGGTGCGCCCAAAA
GTCAGACGTCTATATGACCTACAGACAGCAGGAAACGCGGACAACGAACT
TTGTCTAGCTTGCAAACGGTGCTCGTCAAAGGGTTGAAGTTGCCCAGAAC
CGCCGGCACTCGCCCATCACAAACGTCGGCACCACAGGTATATTTTCCCC
CTAAAGCTCACAAGAAAAGAAATAAAGAAATGATCAAAAGACTAAAATAA
GAGCGCTGAGAATCTCTGGACCACTTTGTGGGTGTTGGGCGCGACTGTTA
CGAATATTCCTCGCACCAGTCTGGACCATTCCAAATGCCAACAATCGCAG
CAGCCACAAGTAATCAAAATCCATCAACGAGTGGTGCCCGTGTGTCGAAG
CAGGAACGTCGGAAGACGTGGGAGGCGAGGATTGATGCTGCCACACAGCG
AAAGCCAGCAGGCCAGACGAGGGCTAAATCGTCTTCTGCTCTGCGCCCGG
GCAACACTCTTCCTCAACCCATCTCCACCACCGATTCGCGTCGCCGAAAG
AAGCGAAGAAAGCGGCGGTGGGGAGGCCCGAGAATATTTCGTCGTGGAAA
CTACGGCTGGCTGACGTCGTGCGCCGAGCCGAGACAGTGGGAACCGCAAC
TCAAACTTCTCGAAGACAAAGGCAAGGGTAGCGGCGGCCACCCGGCAACA
CCCATCTCAGACGTCTCGAGAACATGGTCGCTGACGGAAAAGAACGCCCC
ACGCCCAGTGCTGAGGCGCGGCGAGCGCCACAACCAGTCGGAGTACAACC
CGCAGCACCGCAATCTGCCTCGAGAGAAGGACGGGTACCCCGGTCCGAAG
TACGACCGCCCCCCCGGAGCGTTTGGAAGAACGGGCGGCGGTGGCGGAAC
GGTCGCCCCGAGCGCCTCTATGTCTTCGCTAGATCGCTTCCCCCGTGGCC
GGCTGTTTTCTGAGGAGGAAATACGAGAAAGGGAAGCCACCCCAGGCCCA
GAAGCGTACGACGTTGGGCTGGAAAACCGCTTGGAAGGGTGTTCTTTTGA
AAAGATGTACGGGTCATTGGAGACACTCGCGTCTTGGGGTAGTCTGGGGG
CTAGCAGAGCAGGGGGGGGGGGTGCAGTAACGACGAGGTTGCTGCGGACG
GTATAGTACACGAGAGCGAGAATACTAACAAGCGAACGAGTAAGAGTGGG
AACGGGGCAGTGGAGGAGGAAGGATACGCCAAAGACCGGCAATCAGCAGC
GGAGCTGACCGAACGAAATTATTTCCGTCGTTCTCACGCACCCTGTGTGG
CTGGGCAGTCGACGTTGTCCTCGCCAGCGAAAATGGAGACCAACAGCGCT
CGCTGCAGTAGCAACGGGCGGCGGCAGCACTGTTCTCGACTATCACCGGC
ATCGTCGGTGGCGGCTTGTCGCGGCGTACCGTGTCCGGACTGTGCGAGCG
TCGAGGTAGCCACCGCCGCGGGCACCTTCGCCGCCGCGTCCGCCTCCCTG
TCAGACGCGAACCTGTTCCGACGGGCGAGGACGATCGGCGCAAGCGTCCG
CTTCGGCGACATGCCCCGACTCCGCAGCGCCCCGGCCTTCACGATCGGCA
CGGGCCAGAGGGACGTCTCTTCGCGGCTCCTGCACACCACGCCAGCGGAA
GCACTCTACAAGGAGGACCGTGTTGGGCGGAGCGGGAAGGGGCCAACGAC
GGCCTCTCCCCGGGCCGGAGAACGCCTCACCAGACCCCGGCCGATTGCGG
CGAGAGTCGTCCTCCCAAAACAGGGTCCACGCGCTTCCGCGGGGGGGGGC
TCGGAGGGAGGAAAGTCAGCGGCGGCGGCGGGGGGAGAAGGAGGGATGGA
GGTTGCCGAGAGAGGGGTAATCGTGGTTGATGGGGCTCTTGGGACGCAGG
TAAAATCCCGCCGACCCACCAGCCCTAGCTTTACCCTAGCGGGGCCGCGG
CGTGCGGCGACCCTGTTCCACGAGCGGCTTCGTTACGATGGAAAGGTGAG
CGAAGTGCTTAGTTTTCTCCGGGGGATAAGTCTAGGCAAAGATCATGGTT
CGCTCCTCACTCTCTCACACTCACGCGACGTCTGACTTTGAACAAGTGCC
TCGTTTCTTGATCTCTTGTTGAACACAGTTGTTCCCGTTGGGATTTGATT
GTCCACTAGTCTTGGTTCTTTCATGTGCTGGCTTTGGAACATTGCGAAAC
GCCGTGTAGAAACACATGTTTGGCGTTTTCCGCCAAGGCTCTTGTCGCTT
GTTGATATGTGCCATTTGTCTACCTGTTCGCACGTGAGACAAAATGAACC
TGCTACATACGGCTTTCAGTTGAGGTCAACAAGCACACAACCAGAGACGG
TTGCCCAGCATCGTGAGCTCGAGATCTCGCCTAGAAGACAACCAAGACTG
ACTCTATCGCTTGTTACCATGATCCCGAACCTGCGCGCAATACACGAAAT
TCTGAGAGCTCGAGATGTTGGTCGGGACTCTGTACCGTCTAGCACGGTTG
ATCCGGCGGTGAGCCTCCCTCCGTTTTGCTGTGCCGGCGGCCTTGAGGTT
TCTAGACGCAGTCGTTTTCGCTGGCGCTCGCGTTTCTTGACGCTGTGATG
CTACAGGCGCTGTCTGTGAGGCAACAAGATCAAGCGCAGCCAAAGATCTT
CTTCAATGCCCACGTTCCACCAATCAATGCAGAAGAAGAGTGACGGGGAA
CATTTTTCTTGGAGAGAGGCGGCTTCCTTCTGTCCCTACG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:863455..866944-

>mRNA_Ecto-sp6_S_contig11.1262.1 ID=mRNA_Ecto-sp6_S_contig11.1262.1|Name=mRNA_Ecto-sp6_S_contig11.1262.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:863455..866944- (Ectocarpus species6 EcLAC_371)
ATGCCTCATTCTTCTTCCGAAGAAACACAGGACATCCCTGAACAACAGCC
ACACGGCTGCACGGAGGCACATAAAATTCATGCCGTCACACTGCCGGCGA
AGGTCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCTGCAATT
GGGCAGAACGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGGGAGAAA
GTACCCGCCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGTGCACCT
ACGCCGAGCCCGCGCACGTTTCTAGCCTCAACAATCAGTTGACCTCTGAT
CGGGCCACGTCTTACGCGGTGTTCTTCGGTGCGGCACCTCGTTTCCAGGG
GAAGTGTTCAGTTTCAAATCAAGCCAAAGATGTGCTTCACGTTGCTCACG
CCAAGCCAACGGGACGACGAAGCCCGACGGTGGCCGCCGCCAGCGGTTCT
ACTACAACAACTACAAGCCCGAGCGGACCTGGTCCCGGGGACTACGATGT
CGCACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCGGCGACC
CCGCCCTGGGGGGGAAAAGGTACCCGCCGAGGACCCCAGACCAACCGCGA
GCCGAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATGTCTTGCCTGCG
CCACCAAGTGACCTCGGATCGACCCACGTCTCCCGCGGTCTTCTTTGGCG
GAGCACCTCGTTTCCAGCAGGAACGTCGGAAGACGTGGGAGGCGAGGATT
GATGCTGCCACACAGCGAAAGCCAGCAGGCCAGACGAGGGCTAAATCGTC
TTCTGCTCTGCGCCCGGGCAACACTCTTCCTCAACCCATCTCCACCACCG
ATTCGCGTCGCCGAAAGAAGCGAAGAAAGCGGCGGTGGGGAGGCCCGAGA
ATATTTCGTCGTGGAAACTACGGCTGGCTGACGTCGTGCGCCGAGCCGAG
ACAGTGGGAACCGCAACTCAAACTTCTCGAAGACAAAGGCAAGGGTAGCG
GCGGCCACCCGGCAACACCCATCTCAGACGTCTCGAGAACATGGTCGCTG
ACGGAAAAGAACGCCCCACGCCCAGTGCTGAGGCGCGGCGAGCGCCACAA
CCAGTCGGAGTACAACCCGCAGCACCGCAATCTGCCTCGAGAGAAGGACG
GGTACCCCGGTCCGAAGTACGACCGCCCCCCCGGAGCGTTTGGAAGAACG
GGCGGCGGTGGCGGAACGGTCGCCCCGAGCGCCTCTATGTCTTCGCTAGA
TCGCTTCCCCCGTGGCCGGCTGTTTTCTGAGGAGGAAATACGAGAAAGGG
AAGCCACCCCAGGCCCAGAAGCGTACGACGTTGGGCTGGAAAACCGCTTG
GAAGGGTGTTCTTTTGAAAAGATGTACGGGTCATTGGAGACACTCGCGTC
TTGGGGTAGTCTGGGGGCTAGCAGAGCAGGGGGGGGGGGTGCAGTAACGA
CGAGGTTGCTGCGGACGGTATAG
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