mRNA_Ecto-sp6_S_contig11.1232.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A6H5KX37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX37_9PHAE) HSP 1 Score: 682 bits (1761), Expect = 6.360e-244 Identity = 351/375 (93.60%), Postives = 356/375 (94.93%), Query Frame = 3
Query: 33 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNAAADAGSRRGIPVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAAXXXXXXXXXXXXXEERIKNAKEGDVLPNDLPKDN 1157
MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRS G TNAAADAGSRRG+PVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFY YYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTE+DV+EMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWF VVG+SAAGA KDLNLY EQIGKIEQAELLFKEIEIREKKRLAERLE+KAQDAIKAA EERIKNAKEGDVLPNDLPKDN
Sbjct: 1 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSSGWTNAAADAGSRRGVPVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYKYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEEDVMEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFAVVGTSAAGAAKDLNLYQEQIGKIEQAELLFKEIEIREKKRLAERLEAKAQDAIKAAERAEQDAKNDAEEEERIKNAKEGDVLPNDLPKDN 375
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: D8LAS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS7_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 1.940e-147 Identity = 220/222 (99.10%), Postives = 222/222 (100.00%), Query Frame = 3
Query: 33 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNAAADAGSRRGIPVCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDR 698
MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNAAADAGSRRGIP+CMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTE+DVVEMIKSDDR
Sbjct: 1 MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNAAADAGSRRGIPMCMAATQPKPGPEVMGLNLGKPAPVETPEDYVYEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEEDVVEMIKSDDR 222
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: H6WBA6_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA6_VAULI) HSP 1 Score: 182 bits (461), Expect = 5.560e-50 Identity = 104/261 (39.85%), Postives = 157/261 (60.15%), Query Frame = 3
Query: 294 IPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDR-------SNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
+PDT M ++FGHL+G VKTVSET+ F I Y+K +L Q+RT++ + LQSTHL V + F YD +FG GFY+ F + M+AYP G+A+LI+ A+V ++ ++P+++++D + + E T D+ K +++ SNI D FY LY + WG+G+ M+ +G+ TEE +E ++G S A +DL Y + + K+ QAE LFKEIEIREKK++AERLE KA+ A++AA
Sbjct: 7 VPDTAMYKRFGHLKGKDVKTVSETIKSFCIQYQKPILPQYRTMINDVLQSTHLNVVNGCFIYDAMFGYGFYSLFYKLMKAYPGTGEADLIYAAMVTSLD--MEPEKLKEDHETISKLIENMTRADLENSFKGENQNLLSEISSNIKADEFY-----------------------LYTKTWGIGLIEAMDKVGIPLTEENIESLANMIGFSPIKARQDLVQYKDVLDKVAQAEQLFKEIEIREKKKMAERLEEKAKRALEAA 242
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A835ZGT7_9STRA (Thylakoid formation protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT7_9STRA) HSP 1 Score: 177 bits (450), Expect = 2.010e-48 Identity = 103/253 (40.71%), Postives = 155/253 (61.26%), Query Frame = 3
Query: 297 PDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
PDTP+ ++FG L+G VK VSE++ F Y K +L Q+RT+V + +QSTHL+V DARFKYD +F G + F + MR+YP G+ ++IFD ++ I LDP Q+ D L WA+ +E D+ E +K + S + VA ++ +++LY++ WG+G+ +ME G+E +EE +E + ++G A A +DL Y E + K QAE LFKEIEIREKK++A+RLE KA+ A++ A
Sbjct: 4 PDTPLVKRFGSLKGRDVKPVSESMMSFCKCYPKPILPQYRTLVNDLIQSTHLSVVDARFKYDAVFATGLHGIFFKLMRSYPGEGEEKVIFDCLMNCID--LDPAQVTADAEGLISWAKSASEADLEEAMKGEGSSALAA----VANAA------------KEDEFYLYSKNWGLGLILIMEAAGVETSEEKMEHFVALLGFPAGKAKQDLLQYKEVLEKTAQAEQLFKEIEIREKKKMADRLEEKARRALEEA 238
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A836CK23_9STRA (Thylakoid formation protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK23_9STRA) HSP 1 Score: 174 bits (440), Expect = 7.120e-47 Identity = 100/253 (39.53%), Postives = 154/253 (60.87%), Query Frame = 3
Query: 297 PDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
PDTP ++FG L G +VKTVS ++ F YK+ +L Q+RTIV + +QSTHLT+ DARFKYD +F +G + + R +++YP G+A+ IFDA+ + L+ + D +L WA+ +E D+V +K + S + + +AR +D +++LY+++WG+G+ +ME G+E T+E + + VG A +DL Y + + K QAE LFKEIEIREKK++AERLE KA+ A+ A
Sbjct: 7 PDTPGAKRFGDLSGKEVKTVSASMTRFCEQYKRPILPQYRTIVNDLIQSTHLTLVDARFKYDAVFALGLHGIYFRLLKSYPGEGEAQTIFDALTNCLD--LESASIASDAESLSTWAKSASEADLVAALKGEGDSQLAS----IARAA------------KDDEFYLYSKMWGLGLIQMMEGAGIETTQEKVVELVEYVGFPVAKVKQDLVQYKDVLEKALQAEQLFKEIEIREKKKMAERLEEKAKRALAQA 241
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A7S2W6W5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6W5_9STRA) HSP 1 Score: 147 bits (371), Expect = 3.070e-36 Identity = 90/262 (34.35%), Postives = 156/262 (59.54%), Query Frame = 3
Query: 282 YEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEE----LLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
YE +T +K+GHL+GAK++TVSE A+F V ++ ++T+ + +THL V +ARFK D ++ +G +S ++ YP P QA+ I A+ + + +D ++ + ++++WA+GKT+DDV+ +K + S I +A+ ++ ++++Y+R +G+G+ +MEN+G+E T + ++E+W +G S A+ D + Y + K+E E + KEIEIREKKR+AERLE+KA+ AI AA
Sbjct: 54 YESGAANTEFAKKYGHLKGAKIRTVSEAFAEFTDIVGSPVNAVYKNMITDIVSTTHLMVSNARFKRDAVWSLGIVSSLNLLLKNYPEPEQAKQIKSALFECMF--MDEAEVLAEAKSIEDWAQGKTKDDVLAELKGEGSSPIAA----IAKAA------------KNDEFWMYSRFFGLGLVKVMENVGVEFTPDDVYPVMEQWLGTMGKSHFTASSDSDTYFKIRNKLELMETMMKEIEIREKKRMAERLENKAEMAILAA 297
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A7S4T5P1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T5P1_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.750e-32 Identity = 86/260 (33.08%), Postives = 149/260 (57.31%), Query Frame = 3
Query: 300 DTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEE----LLEKWFTVVGSSAAGAT----KDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
DT +++G + G K++TV E ++F + + +++IV++ + +THL +ARF DP++ +G ++ ++ YP A+ I A+++++G +D + +RKD + EWA+GK++DDV + +K + S + VAR KGE+ +++Y+R +G+G+ +ME +G+E + ++E+W VG S T D +LY K+E E + KEIEIREKKR+AERLE KA+ A+K A
Sbjct: 13 DTEFAKRYGSITGMKIRTVGEAFSEFTRILGQPINALYKSIVSDIVGTTHLITVNARFNRDPIWSLGILSAMDLVLKTYPEQDMAKKIVSAILESVG--IDEEDLRKDAQTVLEWAQGKSKDDVTQAMKGEGDSPLAD----VARAA----------KGEE--FWMYSRYFGIGLIKVMETVGVEMESDTAYSVMEEW---VGKSMEKPTFTACADSDLYFRTKNKLELMETMMKEIEIREKKRMAERLEEKAEMALKKA 251
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A6U1AK03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AK03_9STRA) HSP 1 Score: 135 bits (340), Expect = 4.240e-32 Identity = 87/238 (36.55%), Postives = 135/238 (56.72%), Query Frame = 3
Query: 345 VKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEP-TEELLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
V VS + F Y K ++ +R ++ + + +THLTV F+Y+ FG+G T + F +YP PG A+ IFDA++ ++ LDP + DT A+ EWA+GKTE V+ I + + S I V EK F+Y+R++ +GVF +M +GL+ +E+ LE+WF+ + + D +L+ I ++ AE +FKEIEIREKK+LA+RLE KA+ A +AA
Sbjct: 61 VPPVSVAIQKFNELYSKPIIPMYRALINDLIVTTHLTVVRKDFQYNQFFGLGMQTIYESFFTSYPEPGAAKDIFDAILGSLN--LDPAVVAADTKAVLEWADGKTEAAVLASIDAPEGSAIAETMAAVKAN----------EK------FIYSRVFAIGVFKVMGKVGLDTISEDDLERWFSAMNITTGLIKSDYDLFNGSIERMRDAEQMFKEIEIREKKKLADRLEKKAKSAAEAA 280
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A7S1XEQ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEQ4_9RHOD) HSP 1 Score: 134 bits (336), Expect = 6.480e-32 Identity = 82/230 (35.65%), Postives = 127/230 (55.22%), Query Frame = 3
Query: 309 MTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEG-KTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEELLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIR 995
+ K+GHLRG VKTV++ + DF + + V + + +I+ E+L STHL A F+YDP+FG GF SF F+ YP G L+FDA++KA+ LD Q+R D A++ W E +ED+V ++ S + + YVA P+ E WF Y+R++G+G+F +ME +G++ +E L +W + S A + Y I K++ AE LF E+ R
Sbjct: 24 LEEKYGHLRGRSVKTVADALRDFNDTFNRPVFSVYSSIINEFLASTHLARVCAAFRYDPIFGYGFTESFNDFLANYPNEGDRTLLFDAIIKALD--LDRQQIRDDAEAVRSWLESVSSEDEVFSLLDSPGNNKVAQALHYVATA---PYFE----------WF-YSRVFGIGLFKIMEKVGVKIDQEALRRWSEKLNISIAKLEDEWASYGSAIEKMKVAEQLFAEVTAR 237
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Match: A0A7R9W0H2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0H2_9STRA) HSP 1 Score: 133 bits (334), Expect = 3.760e-31 Identity = 81/262 (30.92%), Postives = 140/262 (53.44%), Query Frame = 3
Query: 282 YEQFIPDTPMTRKFGHLRGAKVKTVSETVADFYIYYKKVVLTQFRTIVTEYLQSTHLTVYDARFKYDPLFGVGFYTSFMRFMRAYPVPGQAELIFDAVVKAIGNGLDPDQMRKDTTALKEWAEGKTEDDVVEMIKSDDRSNIVTDGFYVARTGLGPFGEGWEEKGEDVDWFLYNRLWGVGVFTLMENIGLEPTEE----LLEKWFTVVGSSAAGATKDLNLYLEQIGKIEQAELLFKEIEIREKKRLAERLESKAQDAIKAA 1055
Y+ +T R++GHL+G V+TV E +F + V +++ +++ + +THL +ARF+ DP++ +G + YP G A+ I +++K G+D D++R++ + WAEGKT D+V + +D S + VA D+++Y+R +GVG+ +M IG ++ +E+W +G S+ A D +LY + K++ E + KE+EIREKKR+AERLE+KA+ A+ A
Sbjct: 58 YQPGAANTEFARRYGHLKGRTVRTVGEAFEEFTSLLGRPVNALYKSAISDVVGTTHLITVNARFRRDPIWSLGLLATMDLIFGNYPEQGVAQDIVSSLMKC--TGMDEDELREEARIVSSWAEGKTMDEVTAALAREDDSPVAAIARDVAAD----------------DYWMYSRFFGVGLIRIMNIIGAGEDQDDAYNTIEEWMVSLGKSSFTACSDSDLYFKTKAKLDMMETMMKEVEIREKKRMAERLEAKAEAALAQA 301 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig11.1232.1 >prot_Ecto-sp6_S_contig11.1232.1 ID=prot_Ecto-sp6_S_contig11.1232.1|Name=mRNA_Ecto-sp6_S_contig11.1232.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=376bp MKQTSFLCLSGLAGSLAFVPSTNVVPSSAWTSRSGGSTNAAADAGSRRGIback to top mRNA from alignment at Ecto-sp6_S_contig11:603779..611088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig11.1232.1 ID=mRNA_Ecto-sp6_S_contig11.1232.1|Name=mRNA_Ecto-sp6_S_contig11.1232.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7310bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:603779..611088+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:603779..611088+ >mRNA_Ecto-sp6_S_contig11.1232.1 ID=mRNA_Ecto-sp6_S_contig11.1232.1|Name=mRNA_Ecto-sp6_S_contig11.1232.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:603779..611088+ (Ectocarpus species6 EcLAC_371)back to top |