mRNA_Ecto-sp6_S_contig11.1226.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1226.1
Unique NamemRNA_Ecto-sp6_S_contig11.1226.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1226.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 525 bits (1353), Expect = 1.220e-186
Identity = 291/320 (90.94%), Postives = 292/320 (91.25%), Query Frame = 1 
Query:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHXXXXXXXXXXXXXLLLSSSPTRERSAVPSPGTPSNTRVVGSLDDNSSAETTELHEHPEAAEGARADTLTAGGAQTAGXXXXVIPEEGEVGGSRRGSASEAGKDNGHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGERARFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKRAETWQFSWMARVRNNPVP 960
            MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHH             LL SSSPTRERSAVP+PGTP N RVVGSLDDNS AETTELHEHPEAAEGARADTLTAGGAQ   XXXX  PEEGEVGGSRRGSASEAGKDN HHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXX SNLRDRRGGYVNGGAVSAGKAGE ARFHFQQHEP FYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKRAETWQFSWM RVRNN VP
Sbjct:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQSSSPTRERSAVPNPGTPINKRVVGSLDDNSRAETTELHEHPEAAEGARADTLTAGGAQAXXXXXXXXPEEGEVGGSRRGSASEAGKDNRHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXX-SNLRDRRGGYVNGGAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKRAETWQFSWMTRVRNNSVP 319
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BLAST of mRNA_Ecto-sp6_S_contig11.1226.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.730e-69
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 1 
Query:  505 MFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGERARFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK 903
            MFLKAAFQLLEERDRLFPASIGSWGTA GGWV XXXXXXXXXX SNLRD+RGGYVNG AVSAGKAGE  RFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK
Sbjct:    1 MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXX-SNLRDQRGGYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI1.220e-18690.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE1.730e-6994.74PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:572674..574265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size963
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.9849024-CDS-Ecto-sp6_S_contig11:572673..5731891682348777.9849024-CDS-Ecto-sp6_S_contig11:572673..573189Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 572674..573189 +
1682348777.992731-CDS-Ecto-sp6_S_contig11:573613..5740021682348777.992731-CDS-Ecto-sp6_S_contig11:573613..574002Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 573614..574002 +
1682348777.9999304-CDS-Ecto-sp6_S_contig11:574207..5742651682348777.9999304-CDS-Ecto-sp6_S_contig11:574207..574265Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 574208..574265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1226.1prot_Ecto-sp6_S_contig11.1226.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 572674..574265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1226.1

>prot_Ecto-sp6_S_contig11.1226.1 ID=prot_Ecto-sp6_S_contig11.1226.1|Name=mRNA_Ecto-sp6_S_contig11.1226.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=321bp
MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLL
SSSPTRERSAVPSPGTPSNTRVVGSLDDNSSAETTELHEHPEAAEGARAD
TLTAGGAQTAGGGGGVIPEEGEVGGSRRGSASEAGKDNGHHPVLSNTRLF
GDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWV
PPNGGGGGGGGGSNLRDRRGGYVNGGAVSAGKAGERARFHFQQHEPTFYA
NRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIG
KRAETWQFSWMARVRNNPVP*
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mRNA from alignment at Ecto-sp6_S_contig11:572674..574265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1226.1 ID=mRNA_Ecto-sp6_S_contig11.1226.1|Name=mRNA_Ecto-sp6_S_contig11.1226.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1592bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:572674..574265+ (Ectocarpus species6 EcLAC_371)
ATGATAGCGCTTGAGAGCTCTGTTCTCGGTTGCGGCAGCGATGACTGGTC
GGTGGACAGCGACTACGCCTTCCAAGACTTCGCGGACGACGTCAAGCATC
ACCAACAACAACAGGCACGGCACGAAAAGAGCGAACAAAATCTTCTGCTG
TCTTCATCACCGACTCGCGAGAGAAGCGCTGTGCCAAGTCCAGGAACACC
GAGCAACACGCGTGTCGTGGGCAGCCTGGACGATAACTCAAGCGCCGAAA
CAACAGAACTTCACGAGCACCCGGAGGCAGCAGAAGGAGCTCGGGCAGAC
ACGTTGACAGCAGGAGGAGCGCAGACTGCTGGAGGCGGAGGGGGGGTAAT
ACCTGAAGAGGGGGAGGTGGGCGGAAGCAGAAGAGGTTCGGCCTCGGAAG
CCGGCAAGGATAATGGGCACCACCCAGTACTGTCTAATACCAGGCTTTTC
GGGGATCCTGGTAGCAGTTCTGACAGCACGCACATTCTGAGGCTCGAGCA
ACGCATGTTTCTCAAGGTGGGTTTACTTGATAGGTGCCGTCATGTTCAGG
AACATTCCGCGCAACAGTATGGGGGCGCCTCCTACAGTACAGGAAACATG
CGAATATGTTCGTGATCGTTGAAAAGTCAAAAATTTCCTTGGCGGCGCCG
AAGAGACTGTCGATTACACCTCTACATCGATTGAAATTTTCAAGGGACCA
CCCGGTGTGGAGAAAGACCGGTCCAAACGATACCCATCGGTTTTTGTTGT
GCTCACTAGGAAAGTCGTCAACACGTGCGCTTGGTAATGACCATGCAGAC
AAACTTGCAAGAAGAGCATTGCACACCGATACATGGCTGTGTAAGTCACA
CCAGCAGCAATTTCGTGCGTGAGGCCCTTCCTGAACCTAGCTACAGAAAA
CGCACCGCCGCCGAACCATACCGCGTGCGCCCGAAAACAGGCCGCGTTTC
AGTTGCTGGAGGAACGAGATCGCCTCTTCCCAGCGTCGATCGGCTCGTGG
GGCACCGCCGGCGGCGGGTGGGTACCTCCAAACGGTGGTGGTGGCGGTGG
CGGTGGGGGCAGCAACCTTCGCGACCGGCGAGGCGGGTACGTTAACGGCG
GGGCCGTTTCCGCCGGAAAGGCTGGCGAGCGCGCTCGCTTCCATTTCCAG
CAGCACGAGCCTACTTTCTACGCGAACAGGCCGAGGATCCTCAAGTCAGG
GACCCTGCGGAAGGCCACGGCGAGGAGCGTTGGGCGCCTCGAGAAAACCA
CGTGGAAAACCAAGTACGTCGAGCTCACGCCCGGGAGCTTCGCGTACTCC
GACAACGGGCCCATCGTGATAGGGAAGAGGTGAGTGGTTGCGTGCGTCGA
AGGCCACATGCAGGGCCTGAGTCAAGATTCACAAACAAACGTTTGTCAAT
GGTAAGAGTTGGCATCACGCGCATTATTCTCAGTGACGTGAGCACCCGGC
ACAATGTAGACACTGCAATTAAACGTACAGATTCCACCGCATCCGACCGA
GTGTTGCCTACATGTTTTTCGGGAACCGGAAAAGGGCTGAAACTTGGCAG
TTTTCGTGGATGGCACGAGTACGCAACAACCCCGTACCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:572674..574265+

>mRNA_Ecto-sp6_S_contig11.1226.1 ID=mRNA_Ecto-sp6_S_contig11.1226.1|Name=mRNA_Ecto-sp6_S_contig11.1226.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:572674..574265+ (Ectocarpus species6 EcLAC_371)
ATGATAGCGCTTGAGAGCTCTGTTCTCGGTTGCGGCAGCGATGACTGGTC
GGTGGACAGCGACTACGCCTTCCAAGACTTCGCGGACGACGTCAAGCATC
ACCAACAACAACAGGCACGGCACGAAAAGAGCGAACAAAATCTTCTGCTG
TCTTCATCACCGACTCGCGAGAGAAGCGCTGTGCCAAGTCCAGGAACACC
GAGCAACACGCGTGTCGTGGGCAGCCTGGACGATAACTCAAGCGCCGAAA
CAACAGAACTTCACGAGCACCCGGAGGCAGCAGAAGGAGCTCGGGCAGAC
ACGTTGACAGCAGGAGGAGCGCAGACTGCTGGAGGCGGAGGGGGGGTAAT
ACCTGAAGAGGGGGAGGTGGGCGGAAGCAGAAGAGGTTCGGCCTCGGAAG
CCGGCAAGGATAATGGGCACCACCCAGTACTGTCTAATACCAGGCTTTTC
GGGGATCCTGGTAGCAGTTCTGACAGCACGCACATTCTGAGGCTCGAGCA
ACGCATGTTTCTCAAGGCCGCGTTTCAGTTGCTGGAGGAACGAGATCGCC
TCTTCCCAGCGTCGATCGGCTCGTGGGGCACCGCCGGCGGCGGGTGGGTA
CCTCCAAACGGTGGTGGTGGCGGTGGCGGTGGGGGCAGCAACCTTCGCGA
CCGGCGAGGCGGGTACGTTAACGGCGGGGCCGTTTCCGCCGGAAAGGCTG
GCGAGCGCGCTCGCTTCCATTTCCAGCAGCACGAGCCTACTTTCTACGCG
AACAGGCCGAGGATCCTCAAGTCAGGGACCCTGCGGAAGGCCACGGCGAG
GAGCGTTGGGCGCCTCGAGAAAACCACGTGGAAAACCAAGTACGTCGAGC
TCACGCCCGGGAGCTTCGCGTACTCCGACAACGGGCCCATCGTGATAGGG
AAGAGGGCTGAAACTTGGCAGTTTTCGTGGATGGCACGAGTACGCAACAA
CCCCGTACCCTAA
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