mRNA_Ecto-sp6_S_contig11.1221.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1221.1
Unique NamemRNA_Ecto-sp6_S_contig11.1221.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1221.1 vs. uniprot
Match: D7FSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW1_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 2.660e-53
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:   25 MAEEDLYGDLDTSVDALKIKGLEAELSTSESLRKGLEERLASALRKEKVIQAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGARR 327
            MAEEDLYGDLDTSVDALKIKGLEAELSTSESLR+GLEERLASALRKEKV++AENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGARR
Sbjct:    1 MAEEDLYGDLDTSVDALKIKGLEAELSTSESLRRGLEERLASALRKEKVLRAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGARR 101
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BLAST of mRNA_Ecto-sp6_S_contig11.1221.1 vs. uniprot
Match: A0A1V9Y677_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y677_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.180e-8
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   25 MAEEDLYGDLDTSVDALKIKGLEAELSTSESLRKGLEERLASALRKEKVIQAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGK 300
            MA++DLYGDLDTSV  L    L+A+L   ++  + L +           + A N+ L +N+S LF TA+ EIARK+  I+ LR+ELQ A+ K
Sbjct:    1 MADDDLYGDLDTSVTGLSSVHLKAQLKELQAKHEALLKEAGGLQHANATLGARNQVLERNMSVLFATAQTEIARKDKTIQSLREELQQAQEK 92
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BLAST of mRNA_Ecto-sp6_S_contig11.1221.1 vs. uniprot
Match: W2KK61_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2KK61_PHYPR)

HSP 1 Score: 53.5 bits (127), Expect = 6.870e-6
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   34 EDLYGDLDTSVDALKIKGLEAELSTSESLRKGLEERLASALRKEKVIQAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAE 294
            EDLYGDLDTS +AL+ K      +  E   K L + LA    + + + A N+QL  +IS LF TA+ E+ RK+  I+RLR +L+  E
Sbjct:    2 EDLYGDLDTSTNALEKKEALDIKTKVEKENKRLRDELAQLQEQNRQLGAANKQLENSISTLFATAQLELGRKDKEIKRLRSQLESRE 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSW1_ECTSI2.660e-5397.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Y677_9STRA4.180e-842.39Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W2KK61_PHYPR6.870e-642.53Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:544897..547746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size785
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006580.1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.5633612-UTR-Ecto-sp6_S_contig11:544896..5449201682348777.5633612-UTR-Ecto-sp6_S_contig11:544896..544920Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 544897..544920 +
1682348777.59925-UTR-Ecto-sp6_S_contig11:547291..5477461682348777.59925-UTR-Ecto-sp6_S_contig11:547291..547746Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 547292..547746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.5733063-CDS-Ecto-sp6_S_contig11:544920..5449831682348777.5733063-CDS-Ecto-sp6_S_contig11:544920..544983Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 544921..544983 +
1682348777.582156-CDS-Ecto-sp6_S_contig11:545250..5453251682348777.582156-CDS-Ecto-sp6_S_contig11:545250..545325Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 545251..545325 +
1682348777.5907488-CDS-Ecto-sp6_S_contig11:547123..5472911682348777.5907488-CDS-Ecto-sp6_S_contig11:547123..547291Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 547124..547291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1221.1prot_Ecto-sp6_S_contig11.1221.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 544921..547291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1221.1

>prot_Ecto-sp6_S_contig11.1221.1 ID=prot_Ecto-sp6_S_contig11.1221.1|Name=mRNA_Ecto-sp6_S_contig11.1221.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
MAEEDLYGDLDTSVDALKIKGLEAELSTSESLRKGLEERLASALRKEKVI
QAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGAR
R*
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mRNA from alignment at Ecto-sp6_S_contig11:544897..547746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1221.1 ID=mRNA_Ecto-sp6_S_contig11.1221.1|Name=mRNA_Ecto-sp6_S_contig11.1221.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2850bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:544897..547746+ (Ectocarpus species6 EcLAC_371)
CGAGACGAAAAAATTCAAACAAGGATGGCGGAAGAAGACTTGTACGGCGA
TCTCGACACTTCGGTGGATGCTTTGAAGATCAAAGGGGTGGGCTTTGCGT
TGCGCTGCTCGTAGCTGCTGAGTTTTTTGCGGGTGTACATGTGCCTGCAT
GGTTTTACGTCGGATGCATCAGGCATACGTGCATTTGCTCCGTTGCTGCT
GCTGTAGCATCTTTCGTCTACCATCATCTCGTTGTGCAGACGTCAAGACG
TGACCTACACTGCTGTTTGTGCTGCTCCCCTGGCCGTAAATACTACGCCA
CTGCTGTGCTGTACTCTTTCCTGTCGTGTTTTTCTCGTGGATACATCACC
AAAGCTGGAAGCTGAGCTTTCTACTTCAGAAAGCCTGCGGAAGGGCTTGG
AAGAGCGCCTTGCTTCAGCACTCCGGAAGGTAAGCTCTGTGAGAACTGCT
TGTCTGTGTCCTCCAACCTACCGTGACTGCTGTTTACAGCGGCAGCAGTA
TAGAGCGCTGTAGACACACTAGCTGCTGTGGGCACGTACATAGCTGCCCA
ACTGAATGATGGCAGCACGTCTGCATCTATAATAGCTTGCTTGCGGCTAG
ATGTGTAGACCTACTACTGCTGCTCCTGCAGCTGCTGTTGTTGTAGACTG
CAAGTGTGTACAGCAGTTATTTCGGTTACATACGAAATGAACGTGTGGGC
GCTTACACCTTCTCATTGATGGATCGGCTTTGTCCGTAGTAACTATTCAC
GACCGATAAGGGGGAGGGACGGCAGTCCTTCTCGCAGTTTGTAGGATAGG
CACCTACAGCAGTACAGGCCATTTGCATCGCTTTATTTATTGGTAAAGCA
CGTTTAATCCGAGACCTTTCCCCAAGTGTCAGATGGGTGTGACTTGCACG
TGCGGCGATTTCCCTCACCAGGTCGTTATTTCGTTATTTCACATATATTC
TAGTCTACATACCTGTGTTTACCACATTATTACTGCCTGTTTCAGCATCA
AACACGGCCTTCTGCAAATTTCCCGCAGAGGCACCTCCTCAGGCCAGTTG
TTATCGAAAGAATTCCCCACCAGGAATCCCGATATTTCGCCTTTTACATC
CAAACCCCCATGAGGCCGCAGGAGTTCGGCGTACTTCGTTGGAAAAGCTC
ACAAAAGCGCTTGGGCACTCAGTACTCGCCTCACAGAGACCCGTTTGCTT
TCAAACCTTCGAGGCCGCGTAGAGCATTGCTGTGAGCCTCTTCGAGCCAA
GTTTGGGGAGCTGCGGTGCAGTGTGTGTTCACCATGCTTGGTAAAATAGG
AGTTCCAGTTTGGAATTGCTGGACGATCCTGTTGGGAATTCCTCATGAAA
TCCCAACTGAAATTGGTTGGAATTCCAAATTGGGAATCGTGAATTTGCTT
TCATATCATTACATACTCTATGCACACTGCACTGTAGCTGCCCAAACTTG
GCTCCGAGAAGCTCACAGTAGTGGAGTGTACAGCCTTATCGGTTAGATGG
CAAACAGGGGTCTGTGCGGCGAGGACGAACTGACAAAGCGCTTTGGTGCT
CTCTGCTTGCTGCCCGTACGCAGACCTCCTACTTTTAGGGGGGGTGGAGC
ATTGTCTGCCGATCCCCCGGATTTCCATCTGGGAAAAATTTCCATAACAA
CTGGCCTCACCATGTTCATGAGCGCTCCACGCAGGGGTGCCCAAAAGTTT
TTTCTCCGACACCCACGTACCCATTTTGTTTTTTGGGAGGTGTTTGGGGG
GGGTACCGGTACTCTAATTCCTAACTAAAGCATAGGGGGCCCGCGGTGGG
GAACCATTTTTACCGTGGATTACCCTATGCACGAGCTAGGATCCTTTCTT
GCGAACCTCGAAGCCATGATCACACAAATGGGAACGTAGCACACCAAGAG
AGCACCTACTCCACTCAAACTATGCGTATAACGTCGTCACTTGTTGTACA
CGAACGTCGTCACTGTTGTACACGACATGTCGCACATGAGCTACTTGCGT
GCAGTAGGCTCTAAGCCCCATGAGAAGCAAAAAGTCGAAAACCTTTTTTC
GGCCCTCCCGGGGGGGGGGGGTACCTGGTGTGCGGGATGACATTCTTCGT
GCACCCTTGCTCCACGGCACAAACATTTGCCGGTGTCAGTCTTTGCAATA
CAATACCCAGCCTGAGTGCAAGCAGGCCTCAAAATTCTAATCTGCATGTG
TCCGTGGATGTTGCGCGTGTGTGGCAGGAGAAGGTGATACAGGCCGAAAA
CGAGCAGCTGGCCAAGAACATATCGTGCCTATTCAACACCGCCAAGGCTG
AGATCGCTCGGAAGGAAACGTGGATTGAACGACTCCGGCAGGAGCTTCAA
GTGGCAGAGGGGAAGCTCAAGCAGAAGGACGGCGCTCGCAGATGACAGCT
GCTGAAGCGCGAGGCAGCAGCTCTTCTTGTAGATTCCAGGCGTAAAGTTC
TTCGGACTTCGTGTATTGGCAGTACAGCGAACGGGGTGGGCGGTGTCGTT
TTGTGGTTTTGGGGCTGTAGTCTTTAGTCTTGGGTGTGCTCCGACGCTGG
TGGCATATCAAACAAGTACGATCGGGGAGCGGCTTTTCATTTTTCAGCAT
CAGAACTGCTCTCACGCAATCTCGACCTCGTTGGCCCTACTGTGCGTTTG
CCCTTACGCCCTGAAGTACAGACGCCATTTCGAGGCGTACACGTACCTAT
GTACGCCTTGCGCTTGATGTTGTGGCGTGCAGGTCATGCGCAAAAGCCTG
CGCAACATACTCACGAACCAGTATCTTAGCACGCTCGGTACGGTTGGATT
GTCCTCGTCAGTTCTTCGACGAAAAACATGTTGTTTCCATTCCTCAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:544897..547746+

>mRNA_Ecto-sp6_S_contig11.1221.1 ID=mRNA_Ecto-sp6_S_contig11.1221.1|Name=mRNA_Ecto-sp6_S_contig11.1221.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:544897..547746+ (Ectocarpus species6 EcLAC_371)
ATGGCGGAAGAAGACTTGTACGGCGATCTCGACACTTCGGTGGATGCTTT
GAAGATCAAAGGGCTGGAAGCTGAGCTTTCTACTTCAGAAAGCCTGCGGA
AGGGCTTGGAAGAGCGCCTTGCTTCAGCACTCCGGAAGGAGAAGGTGATA
CAGGCCGAAAACGAGCAGCTGGCCAAGAACATATCGTGCCTATTCAACAC
CGCCAAGGCTGAGATCGCTCGGAAGGAAACGTGGATTGAACGACTCCGGC
AGGAGCTTCAAGTGGCAGAGGGGAAGCTCAAGCAGAAGGACGGCGCTCGC
AGATGA
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