mRNA_Ecto-sp6_S_contig11.1220.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1220.1
Unique NamemRNA_Ecto-sp6_S_contig11.1220.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A6H5L731_9PHAE (Glyco_trans_2-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L731_9PHAE)

HSP 1 Score: 621 bits (1602), Expect = 2.000e-214
Identity = 314/379 (82.85%), Postives = 319/379 (84.17%), Query Frame = 3 
Query:  210 MWDTLVCGISIAGILAYW*ADKTRASLFRKRETTDSRHMSSIIPFFVSCHKRVLPELPLADAALSLPMAYPRGLRRAETGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYGRDPDPIVVADDSHSLDAGSGGKILDDQAHNSAEPAPSR 1346
            MWDTLVCGISIAGILAYW                                                      GLRRAE GPRLVPN ECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTM+AVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFW+NW+FLFLYSKLGFSPEQIFRLYYGRDPDPIVVADDSHSLD+GSGGK LDD  H SA+PAPSR
Sbjct:    1 MWDTLVCGISIAGILAYW------------------------------------------------------GLRRAEAGPRLVPNTECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMDAVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWRNWMFLFLYSKLGFSPEQIFRLYYGRDPDPIVVADDSHSLDSGSGGKTLDDHVHVSADPAPSR 325
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: D7FSW3_ECTSI (Glycosyl transferase, group 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW3_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 2.030e-88
Identity = 148/183 (80.87%), Postives = 155/183 (84.70%), Query Frame = 3 
Query:  720 MAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYGRDPDPIVVADDS 1268
            MAKGDLLLFVHADTIVPPAFDVTLRKAFRDP+ILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQA   FCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWE+ G   F +  +N  F  LY     S +QIFRLYYGR       + +S
Sbjct:    1 MAKGDLLLFVHADTIVPPAFDVTLRKAFRDPKILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQA---FCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEKQG--VFRSSLQNICFALLYVVGNLSADQIFRLYYGRPXXXXXXSSES 178
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BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A835ZCJ3_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ3_9STRA)

HSP 1 Score: 214 bits (545), Expect = 6.290e-59
Identity = 117/274 (42.70%), Postives = 163/274 (59.49%), Query Frame = 3 
Query:  456 LVPNAECHVG-EGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAVASMKLDVK--LSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPF----------GMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPG--NNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYG 1232
            + P +   +G +G ++V++PAYNEG G+  TLA +    +   LVE+++VD GC D TM    ++ L +   + T  S GGRGPAL+AGA+ A+GDLLLF+HADT++P  +D  LR AF+DP +L+S F FG+NRA+   +             G+ ++E   + RTR    PYGDQA    C +   +  +GGFP + MMEDFE VRR +     GG  I  L   ALC+PRRWEQ G      +NF     F+F Y  LG+SP+QI+  YYG
Sbjct:   37 ITPGSGPQIGKDGLITVIIPAYNEGAGIADTLAALSAATEATGLVEVVIVDGGCSDDTMAQARAVPLRLAHGIRTLESRGGRGPALHAGAQAARGDLLLFLHADTLLPQGYDAALRDAFQDPALLLSCFRFGVNRAVCAARGAXXXXXXXXXXRGLRLLEWAVDRRTRAKSFPYGDQA---LCTSRVNYFRLGGFPRVPMMEDFEFVRRAKAVAQGGGWGIRQLPLTALCSPRRWEQKGVLTVSLLNF----SFVFRYVVLGWSPQQIYDRYYG 303
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BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A0M0JLK4_9EUKA (Glycosyl transferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLK4_9EUKA)

HSP 1 Score: 193 bits (491), Expect = 2.810e-51
Identity = 111/264 (42.05%), Postives = 150/264 (56.82%), Query Frame = 3 
Query:  495 VSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAVASMKLDVKLS--TTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKE--PFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQP------GNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYGRDPDPIVV 1256
            +SVVVPA+NE   + + L T++  A     V+++VVDAGCKD TM  V +     K+S  TTTS GGRGPA+ AG R++ GD +L +HADT +P  +D  + +A  DP +LM+ F FG +RA L   E  P G+A+ME   N R+R   LP+GDQA      T      +GG+P+  ++E+F +V RLR    AG G I  LD  ALC+PRRWE+         N  V  W  W         G +P Q+F  YYG  P P+ V
Sbjct:   78 ISVVVPAFNEARSIGMCLETLERHASSLKRVQVVVVDAGCKDDTMAIVTAWAAQTKVSVLTTTSSGGRGPAVAAGTRLSVGDAILVLHADTALPANWDGAVLEALADPTVLMTAFSFGCDRAQLSCPESPPAGLALMEWTVNRRSRWYELPFGDQA---LATTRATLDAIGGYPETCILEEFILVNRLRAMSAAGLGRILTLDATALCSPRRWERSTVWRINAVNQAVMLWHRW---------GATPAQVFEFYYGM-PAPVPV 328
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A7S3PIZ7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PIZ7_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.200e-49
Identity = 110/259 (42.47%), Postives = 142/259 (54.83%), Query Frame = 3 
Query:  477 HVGEGFVSVVVPAYNEG-DGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGIN-------RALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYY 1229
            H     VSVV+P YNEG + +   L  +D+    KS  E+IVVDAGC D TMEA+    + + +    S  GRG AL+AGA  A GD+LLF+HADT++P  +D  LR    D ++LM+ F F IN        A  R     G+  +E  TN R R   LPYGDQA          + E+GG   + MMEDFE+V R+R+  L  GG I +L E A C+PRRWE+  N    N   NW F+  Y   G SP+ IF  YY
Sbjct:   68 HTSVSKVSVVIPVYNEGAENLIQNLERLDQSTLGKSCTEVIVVDAGCSDDTMEALVKADMRIPVRVLRSKHGRGQALSAGAESATGDILLFLHADTLLPTGYDEVLRNKLADKKVLMTAFSFEINVENAEDSTASFRN----GIKRLEYFTNIRARNFWLPYGDQA---LAMRRSAYKEVGGVKRLKMMEDFELVSRVRRIALENGGRIEILPEHAKCSPRRWEK--NGIAKNSVLNWTFVAAYVWAGISPDTIFEYYY 317
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A7S2RVS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVS7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.190e-47
Identity = 106/264 (40.15%), Postives = 144/264 (54.55%), Query Frame = 3 
Query:  492 FVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAVASMKLDVK-----LSTTTSV---GGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYGRDPDPIVVA 1259
             VSV++PAY E   ++ TL  I+        VE+IVVDAG  D TM+ V  +  ++      LS  T V   GGRGP LNAG R ++G +LLF+HADT++P  FD  +R+A  D E+L + F F ++RA         +  ME   + R+ +  LP+GDQA      T  +F  +GGFPD+ MMEDFE+V+ LR+   AG G+I  LD  A C  RRW +  N  +     N V +  Y   GFSP QI+  YY   P     A
Sbjct:   55 LVSVIIPAYREATTIEATLRRIEHTVAASDRVEVIVVDAGGNDGTMDIVRRVSAEINEQATGLSIRTDVWARGGRGPTLNAGVRASRGGILLFLHADTLLPDCFDALVRRALEDHEVLATAFRFRVSRA--EDTRVAALGWMEWTVHLRSSLYELPFGDQA---MAITRQRFDALGGFPDVPMMEDFELVQALRRAGAAGAGYIKTLDAPATCGARRWVK--NKVWWCNAMNQVIMIAYVYFGFSPTQIYTWYYQSTPSSRSTA 311
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: D7FSW2_ECTSI (Glycosyl transferase, family 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW2_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.710e-46
Identity = 97/153 (63.40%), Postives = 98/153 (64.05%), Query Frame = 3 
Query:  210 MWDTLVCGISIAGILAYW*ADKTRASLFRKRETTDSRHMSSIIPFFVSCHKRVLPELPLADAALSLPMAYPRGLRRAETGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAVASMKLDVKLS 668
            MWDTLVCGISIAGILAYW                                                      GLRRAE GPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTM+AVASMKLDVKLS
Sbjct:    1 MWDTLVCGISIAGILAYW------------------------------------------------------GLRRAEAGPRLVPNAECHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMDAVASMKLDVKLS 99
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A5A8DKP3_CAFRO (Glyco_trans_2-like domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DKP3_CAFRO)

HSP 1 Score: 184 bits (466), Expect = 1.930e-46
Identity = 118/312 (37.82%), Postives = 165/312 (52.88%), Query Frame = 3 
Query:  480 VGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTM-EAVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLR-----GKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYGRDPDPIVVADDSHSLDAGSGGKILDDQAHNSAEPAPSR*VS*NTPVLGSRGSPFM 1397
            V +  VSVV+P YNE   ++  L  +D+ A ++  VE+IV DAG  D T  EA  +     K   TTS G R  A N GA  A+GD++ F+HADT VP  +D  +R   RDP +++  F FG++R+  +     G  P GM  +E   N+R+  + LPYGDQ          ++A++G  P +VMMEDFE VRR R + +A G  I VL + ALC+ RRWE  G  P       W F+F Y+ LGF+  QI++LYYG +  P      SH    GSG     D+  + + P  +      TP      SP +
Sbjct:   44 VRKAVVSVVIPCYNEKATIRQVLKRLDDTAVERDSVELIVADAGSPDGTAAEAKRAGTRCTKRVVTTSAG-RAQAHNEGAAEARGDIIFFLHADTKVPLGWDKLIRDCLRDPTVVIGAFSFGVDRSSFKPDNRWGGSPTGMGTVEWFANFRSGRLQLPYGDQG---IFLLRQRWAQLGPMPSLVMMEDFEFVRRARTQAVAEGRRIAVLPQVALCSGRRWEALGV-PATTLSNQW-FVFAYTALGFTDRQIYKLYYGVEA-PTEAGGGSHPA-PGSG-----DEGSSQSTPRGAACDGDGTPPHDRESSPGL 342
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A7S2CQU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CQU7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.890e-45
Identity = 101/261 (38.70%), Postives = 143/261 (54.79%), Query Frame = 3 
Query:  483 GEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTMEAV--------ASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWK----NWVFLFLYSKLGFSPEQIFRLYY 1229
            G G +S+++PAY E D +   L  +++   + +LVE+IVVDAG  D TME V        + + L        S GGRG  L AG   +KGD++LF+HADT+V P FD  LR       +L + F FG+NR  +      G+A ME   N R+ ++ LP+GDQA      T  +   +GG PD+ +MEDFE+V++LR+   AG G I  LD   LC+ RRW++ G       W+    N V +  Y   GF+P QI+  YY
Sbjct:   58 GPGHISIIIPAYKEVDTIGACLQRLNDCISEPNLVEVIVVDAGGGDGTMEKVREAAEGSLSGLTLRTANLPHDSKGGRGATLIAGVAASKGDIILFLHADTVVLPGFDGLLRSELAKDSVLATAFSFGVNRDSVVAPIA-GLAWMEWTVNIRSSILELPFGDQA---IAMTRQRLDAVGGVPDVPIMEDFELVQKLRRIGAAGSGRIKTLDAKVLCSGRRWQEKG------VWRTNLLNQVIMTAYVYFGFTPAQIYSWYY 308
[Close]
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Match: A0A5A8E156_CAFRO (Glyco_trans_2-like domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E156_CAFRO)

HSP 1 Score: 182 bits (462), Expect = 4.510e-45
Identity = 106/257 (41.25%), Postives = 147/257 (57.20%), Query Frame = 3 
Query:  480 VGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDHTM-EAVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPPAFDVTLRKAFRDPEILMSTFLFGINRALLR-----GKEPFGMAVMERVTNYRTRVIHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGGHIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRLYYG 1232
            V +  VSVV+P YNE   ++  L  +D+ A ++  VE+IV DAG  D T  EA  +     K   TTS G R  A N GA  A+GD++ F+HADT VP  +D  +R   RDP +++  F FG++R+  +     G  P GM  +E   N+R+  + LPYGDQ          ++A++G  P +VMMEDFE VRR R + +A G  I VL + ALC+ RRWE  G  P       W F+F Y+ LGF+  QI++LYYG
Sbjct:   44 VRKAVVSVVIPCYNEKATIRQVLKRLDDTAVERDSVELIVADAGSPDGTAAEAKRAGTRCTKRVVTTSAG-RAQAHNEGAAEARGDIIFFLHADTKVPLGWDKLIRDCLRDPTVVIGAFSFGVDRSSFKPDNRWGGSPTGMGTVEWFANFRSGRLQLPYGDQG---IFLLRQRWAQLGPMPSLVMMEDFEFVRRARTQAVAEGRRIAVLPQVALCSGRRWEALGV-PATTLSNQW-FVFAYTALGFTDRQIYKLYYG 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L731_9PHAE2.000e-21482.85Glyco_trans_2-like domain-containing protein n=1 T... [more]
D7FSW3_ECTSI2.030e-8880.87Glycosyl transferase, group 2 family protein n=1 T... [more]
A0A835ZCJ3_9STRA6.290e-5942.70Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A0M0JLK4_9EUKA2.810e-5142.05Glycosyl transferase n=1 Tax=Chrysochromulina tobi... [more]
A0A7S3PIZ7_9STRA1.200e-4942.47Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2RVS7_9STRA1.190e-4740.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FSW2_ECTSI1.710e-4663.40Glycosyl transferase, family 2 n=1 Tax=Ectocarpus ... [more]
A0A5A8DKP3_CAFRO1.930e-4637.82Glyco_trans_2-like domain-containing protein n=3 T... [more]
A0A7S2CQU7_9STRA3.890e-4538.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5A8E156_CAFRO4.510e-4541.25Glyco_trans_2-like domain-containing protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:537856..544911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score291.6
Seed ortholog evalue4.8e-76
Seed eggNOG ortholog2880.D7FSW3
Model size2915
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2E0YR@1,2S8BV@2759
Ec32 ortholog descriptionGlycosyl transferase, family 2
Ec32 orthologEc-27_006590.1
Cds size1026
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1220.1prot_Ecto-sp6_S_contig11.1220.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 539422..544588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.4702845-UTR-Ecto-sp6_S_contig11:537855..5394211682348777.4702845-UTR-Ecto-sp6_S_contig11:537855..539421Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 537856..539421 -
1682348777.5352023-UTR-Ecto-sp6_S_contig11:544588..5449111682348777.5352023-UTR-Ecto-sp6_S_contig11:544588..544911Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 544589..544911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.4805374-CDS-Ecto-sp6_S_contig11:539421..5396531682348777.4805374-CDS-Ecto-sp6_S_contig11:539421..539653Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 539422..539653 -
1682348777.489217-CDS-Ecto-sp6_S_contig11:540175..5402701682348777.489217-CDS-Ecto-sp6_S_contig11:540175..540270Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 540176..540270 -
1682348777.500613-CDS-Ecto-sp6_S_contig11:540557..5406231682348777.500613-CDS-Ecto-sp6_S_contig11:540557..540623Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 540558..540623 -
1682348777.509181-CDS-Ecto-sp6_S_contig11:541538..5418271682348777.509181-CDS-Ecto-sp6_S_contig11:541538..541827Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 541539..541827 -
1682348777.5180545-CDS-Ecto-sp6_S_contig11:543850..5439451682348777.5180545-CDS-Ecto-sp6_S_contig11:543850..543945Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 543851..543945 -
1682348777.5264397-CDS-Ecto-sp6_S_contig11:544339..5445881682348777.5264397-CDS-Ecto-sp6_S_contig11:544339..544588Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 544340..544588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1220.1

>prot_Ecto-sp6_S_contig11.1220.1 ID=prot_Ecto-sp6_S_contig11.1220.1|Name=mRNA_Ecto-sp6_S_contig11.1220.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=342bp
MSSIIPFFVSCHKRVLPELPLADAALSLPMAYPRGLRRAETGPRLVPNAE
CHVGEGFVSVVVPAYNEGDGVKLTLATIDELAQDKSLVEIIVVDAGCKDH
TMEAVASMKLDVKLSTTTSVGGRGPALNAGARMAKGDLLLFVHADTIVPP
AFDVTLRKAFRDPEILMSTFLFGINRALLRGKEPFGMAVMERVTNYRTRV
IHLPYGDQASRAFCFTAHKFAEMGGFPDIVMMEDFEVVRRLRKEELAGGG
HIHVLDEAALCNPRRWEQPGNNPFVNFWKNWVFLFLYSKLGFSPEQIFRL
YYGRDPDPIVVADDSHSLDAGSGGKILDDQAHNSAEPAPSR*
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mRNA from alignment at Ecto-sp6_S_contig11:537856..544911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1220.1 ID=mRNA_Ecto-sp6_S_contig11.1220.1|Name=mRNA_Ecto-sp6_S_contig11.1220.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7056bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:537856..544911- (Ectocarpus species6 EcLAC_371)
AATTTTTTCGTCTCGTGGAAACAGGTGGAAATGTCGGTCTGGTCGGCATA
GAGGTTCTACGATACGCTTGTTCTCATGCGATCTACGCTTTTTTTGTGGT
GGTCTCCGGAGAAGGCAGACATCAGCCCGGTAGCACCCGTGCTCAAGCAG
GCACTTTTCACAACCTGCCTCGACCCTGGAGGGCTGTACCTCTCGACCTC
TCAAGGGTTATGTGGGACACGCTTGTCTGCGGTATTTCTATCGCCGGCAT
CTTGGCCTACTGGTGAGCTGACAAGACGCGCGCCTCCCTTTTCCGGAAGA
GAGAGACCACAGATTCAAGACACATGAGCAGTATCATCCCGTTTTTCGTT
TCCTGCCACAAACGCGTGTTACCCGAGTTGCCGTTGGCTGATGCTGCGCT
CTCTCTGCCCATGGCCTACCCCAGGGGGCTGAGGCGAGCGGAGACCGGGC
CAAGACTGGTCCCAAACGCTGAGTGCCACGTTGGCGAAGGATTCGTGTCG
GTCGTGGTGCCTGCGTACAACGAGGGAGATGGGGTCAAGTTGACGCTCGC
CACCATCGATGAGCTGGCCCAGGTACGCTGCACGCGTCCCCCCCGCGAGA
CCGGCGCGCAGTAAGCTGTCAGCCAGATCCATCCCAATGAGCTATATCCT
GAGTTTCCGGAAATGATATTAGTACCAGCAGCTTGTTGTCTTGCAGATCC
TGGCCATTCGCCGAGGTCTGCGGGCTGGATGAGGATTTTGTCCTCCTGCA
GGCATCCCACCGCCAGCTACACCTGCAATCCCATACTCCGTGGGTGTACT
GCTGTACCACCCCCCATGTATCTACGAACAAGTAACTACTGCTCTTCATC
TCGAGGTGTGAATCGACGCTGCATTCGCCCACGAGTGCATCGGTGATCCG
TGTCCCTTTTTGTCGCTTCGGTCGTGTGTCATGGCCACCTGCTGCTGCAT
GGGTGTCGCCATAAAGGACAAGTCGCTGGTTGAGATTATCGTGGTCGATG
CCGGTTGCAAAGACCACACGATGGAGGCCGTCGCCTCCATGAAGCTCGAC
GTCAAACTCAGGTGGGACTACGCATGGTCCCGGCGGCGAATGCCGGGCAT
GTTGTGTGTCTAACATGTGTGTGCCAGTGCTCAACCAACGACAGCTGCTG
TATATCCGGGTGAAGAACGAACGAACCCTGCTCCAGACTGCTGCCGTAGT
CGAGACGCCCTGTCTGTACAGTAGTGTCGTTTCGATTTTCGACGAGGATC
TTGCTCTCCTAGAGAAGAAGTGTGCCCTGGACTAAGATCGGCGAACTCAC
GTGGATGCGAGATAGGGAATCCAGCCGTTGAGCCCTGGCTCAAGCTGTCA
CGAAATCTGTTCGTTTTTAGTGCCAAGCAGCGCTACGTACGCGAACTGCC
CCCCCCATGGATGCAGATAACATGCAGATGCAAATGGCAAGAAACGCCGC
AGCGTGAAGTCCAGCGTACGTACTAGGGGGCCGACGCCAGAAAAAGAAGA
AACGGCAATTTGCGGGTCCAGGGAGGTTGAGTTTGTTGCGTTGCCACAGC
CATCTGACAACATGTTACCAAGGTCCTCCCTGCCTTCGGCCCCCACGTGC
TCCGGCCCGCTGTGGAATATGAATAATGCGGAGAGCGATTGGGTAAGAGT
GCCAACACTACGGGGTACCTTCGATGAACCTGCAAGCGAAGATTCGATTC
AATGCTATCATCTTACTGTAGCTTCAAATCCCGACTTTAAGGGCCAACGG
GGGGTCGCCGCGTGTCTCCTCTTGAAAAATCCCGGAAACACCTGCATGCC
TTGGTTTTCCAAATTTTAACTCCTGTACGAAACTTCCATCGCAAATTAAC
CGTCTGCTGACCCCCCCTCGTGTACATGCATAATGTTACTTCTATCTGAG
ATTTGTGCCTCTCGCAAGTTGACCCTGTCCATGAATATGCGCCATGACCA
CCCGTCAGGCATATGTGGTGTACTCGCTCGCGGGCGCCAATTTTTCATCT
GTTTCGACTTTCTTACAAGTTAGAAACACATTATACACGGGTCAACAGCA
AGAACCCTCCGTACGTATAGTTCGCAGTCAACCTTCCGGACAATCAAGTC
CGCGTGACTGCTGTTATCAACCATGCATGTGTATACGCTGAATACTGCAG
ACTGCTGTGAAAATCTCTGCCAGCAAGTATTTTGCTAATTTGTGGGATAT
GCAGTTCGCAGTCAACCATGCGGCGACGAAGTCCGCGCGTTGATACTTAT
GAATCATCCATTGCGTGTGCACACGCGGAGTAATGCGGACTGCGCAAAAT
TGCAGATGTAAGAAGAGTGCAGTGTAGTGCTTGCGACTTGGTCAAAACTG
GTGGTCTACATGTTTCGAAAGGAAGCGTGGTGCAGTATCCATCGGGGTAA
ATATCCTCCGCCGCTGCCCGACCCACTTTAGAGATTCCTCGGGATAATAT
GCTGGAACGCACACTTTGTCAAGAGCACAGCTTCCTCCTCTCGCTACATA
CGGAGCCGATCGGATATAAGGAACGTCCAAATCGGGTCGAGGCTCATTTT
TTATTTCGTTGGCTCTGCTGTCGAGTAGAGTACAGGTTGTTATATAGAGT
TTCGTGCAAGGATCCACCGCCGAGCTATGTTTCTTCAGCCCGTTTTTTTT
ACTTTTGGCGAAAATTTGATCCCCTGTTCCTTATTTCTTAACAGCGGGCC
CGTTCTGCATCGACACTCCAACCCCCCCCCCCCTCCATTCACAAGGGAGG
TACAGAGAGATGTTTGAGGCATGGAATAGAGAGGAGAGGACGGTAGCTGT
ACTGGAGAGTAGGAAGTGGTTTGAAAAGGCGGGAAGGGATATCGCTAGGA
TAGATAGACCAGGGACAACATTTTTGAGCCACCTTTGGCAAAGTAGGAAG
GAACGATGGGCCATCGGTGATCGGTACTGTGGGAACAATGCTCCGTCCTC
TCGAGGAAGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACATAAA
AGTACGCCCCCACCCCACCCCTTCCCCCCCTACCGATGTGTACCCTGTCG
CCACGTACGCACCCCGAACACGACAAAAACACAGCACGACAACCTCTGTG
GGCGGGCGCGGACCGGCTCTCAACGCCGGGGCGCGGATGGCGAAAGGAGA
CCTTCTTCTGTTCGTGCACGCGGATACGATTGTGCCCCCGGCGTTCGACG
TGACCCTCCGCAAGGCTTTCCGGGATCCTGAGATACTCATGTCCACGTTC
CTGTTCGGGATCAACCGGGCTCTGCTCCGCGGGAAGGAGCCGTTCGGGAT
GGCTGTCATGGAGAGGGTGACCAACTACAGGACCCGCGTCATCCACCTTC
CGTACGGCGACCAGGCGAGTCGGGTATAGGTTTAGCACCGCGGTCCATGG
TGAGCGTGCCGATACATGCATATGGCGGTGAGGTTTTGTGCTTTGCAGGC
GTGTAGGACCGTTCCGTGTGCCGCAAGCTCTACCTTTGTACTTGGCCTTT
TGTGTACCGCGATGTTATTTCTGTCTTAGTTGTGCAGTCGGTCGGGATTG
TGGTGGTCACATACTTCGCTGCCAACCGCGTGCTCTACACGTGGGACCTG
GCCTGTTCCATGCAGGAGGCCTGATCCGGGTGCAGAAACATGATCAGTTG
TGGCCGTTTGCATCTCCCTAGCGCAGTGCCCTACACGGAATTTTTCGCGG
GACGTGCGTACGACCGTTGTGTATGTACCAATCTTTCATTTGCGTTTTCG
TTGTTGTTGTTGCCCAAAGGGTGGGGTAGGGCGGGGCGGGGGGGCTAAAG
AAACAGGTTAGATACCTACCCCCGCGAGAGCGTGGAAGACTTCTCCGACA
GGTACGGGAATTCTTGTGGTGGTACAAAAGCATTGTCGAAACGGAAGCTT
GTTACTGAGCCACTAGGACCTACCGGTGCTGGTCGTGTGTTTGTGATGGT
AATCTGAGGAGACCGTCTCAAAAGGTCCTTAAGGTGCCTCCTGAGTCTAC
CCCCCCCTTGCGGTGCAATGGTTGGTAGAGCTCCCAGTTTACATGTGTTT
TTCTCTCCTAAGATTCCAGCATCGTCGTATTATTGTTAGGTGTGTTGGCG
ATGCGGTCGGGGACGTAAACGGCTCGTGGTGCGATACAGTCGGTTCCGCT
CCAATGCTTGTGCTTGAACCCTATGTTTCCGGCTTCGGTTGTTCCTCTCT
TGCAGCTTGTGGTCCCCCTGAACTTCTCCGTACGTGCACGGTACGAAGAC
TTAACCCCAGCTCTCCCCTCTTTGCCCCTAAATCAAAGGCTTTCTGCTTC
ACGGCGCACAAATTCGCCGAGATGGGAGGGTTCCCGGACATCGTGATGAT
GGAGGTGAGCTTAGCACGGACGAGGACCGGCACAGGGGAGATTCGCGGTC
GAAGTGCCGAGCGTGGTTGTCGTCCTGCTCACTGTCCCCGTGGCGTACAT
ATGTGTCGCCAGTTTTAGCTTTGTGTACGTTTAGTCTTCGAAGGCGGTAT
CATAAGCACCTGTCTGCTGAGGAAGACGGTCCCGTGGTCTCGCCCTTTCC
CCTGTCGGGTGCATGCGTGACCGCCGCGAGACGACTTCCGGCATGCATTC
ATCTTAAGTCTTGGCGTGTCGTTCTTTTTCGTCTATTGTAGGACTTCGAG
GTGGTGAGGCGTCTGCGAAAGGAAGAGCTTGCCGGCGGAGGGCACATACA
CGTCCTGGACGAGGCGGCGCTGTGCAACCCCCGGAGGTGACGGATTTCCA
CTTGTAAACGCATGATTTGGACCTAAATGTAGCATTCTCGGTTTCCGTTT
GCTATGGCTCGAGTCGCCTCGGCTTCCATGGGCCCCTTGATTTCGATTGG
TTGATTGGCCGCGTGTTGACAGTGTCGTTTGCAGATTTGCTCGGGACATG
TGGGGCGTTCCAGCGTCAGCAACATCGATGTAGGGTTGAGCACACCTGCG
CCTTAGGTTACGACAGACTTTTACAAGGAAGAAGGTGTACAGCAGCAGGC
GTTGCCTTGGTCTCGTATAACTGCACGTGACGTACTGTTTGCTGTCCGCT
CGGCCTGTGCAGCCGCTTCGAAACGTTCTCCATATCCTCTTGCGTCGAGT
GCTTCCAACCCCCCCCTCCTTCCCCTTCGCTTCCCCCTCATTCCCCGCAA
TGTGCGCGCTCTCACCCACGGGACTGTCACGTCACGGGACTGTCGCGGGA
CTGTTTGGCGACCGTCGTCGTCGTCGTCCTTCTCCCCAACGCACGCACGG
CACAAAAGGTGGGAACAGCCAGGCAACAACCCTTTCGTGAATTTCTGGAA
GAACTGGGTGTTTTTGTTTCTGTATTCCAAGTTGGGCTTCTCCCCCGAAC
AAATCTTCCGGCTCTACTACGGCCGTGACCCGGACCCCATCGTCGTCGCC
GATGACTCTCACTCTCTTGATGCCGGGTCCGGCGGCAAAATTCTTGACGA
TCAAGCTCACAACTCCGCCGAGCCAGCGCCTTCCCGCTAAGTTAGTTAAA
ACACACCTGTCCTTGGGTCTAGGGGTTCTCCTTTCATGGGTTGGGAAGGG
TTCGACAGGGTGCATTCCCTTTCTATGGGTTGGCGAGAGTCGGGTGCATA
CTCTTTCATGGGTTGGGAAGATTCGGGTGCATTATGTGGGCTCTCTGCCG
CTGTGGTACGTCTATTGAGGGGTGCAGTGTTGTTTGTGTGGTGGGTGCTC
TGTTGCGCGTCTCGAGCAACTCTATCCATGGCTGCAGTGGCCCCTCCTGT
GCTTGAAAGCGTTCTTGTTGGTCGGGGGGCGTTGCTCTTACAGAGACGGC
CGTGCGCCTTGAAGATGGATGCACGTTGTCGCTCGTTTTCTATTGTTGTG
TTGTGCTTGTTGGAGATGCAGCCTAAGTCAAACTCCTGGTTTAACTGCTG
TCTGCCCCTTGTTAGCATGGTGTCACGGTAGCCCAGGAAGTTAGCTTCTT
CCGGGTGGACACGGTAGAACATGGTAGCTGAGCCGCGGTGTTCGCTTGTG
TGTTTATCCTCTGGTGGCGCAGACACGTGCTCACCTGTCGTGGGTCTGGA
GTATTCATCCGGGAGCTACCGTGCAACCCCCCAAGTTCACCTCAAAGCGT
TCTGTGTCTGAGACGAGTTGTCTGGCTGGCTGCGTGCGGTGTTTCCAGAA
GCAGAGCGATATTGAGTGTTGCGCTGCCTCTGGTTGAGAATCTTTGCGTC
GTCGAATCTCGTTGGGGGTTGCAAGGTTTTTTTGTTACACCTTGTTTGTG
GTTAGCGAGGCTGTCACACTTTGCGGGGAACAGCGGATTGCTGCATCATT
TTACCGTGCGTTTGTGTGTTGGGCGTCTCTATTTTGTATCTCGGCACCAT
GGGTAGGTAGGTGCGGGCGGTGGGGGGCAAGACTCTCCGTGTTTTTCGAG
GCGGTTCTGGACGGATTAGTTCATCACAATATTTCTACCATGTCGCCCAA
GCAGCCTTTTTTTATGCTATGTTTGTTTTCAGACGTCTCCTTTTCTTACG
GTGTGTAGACTATCTGTGACCGGTATGTAGCTTGCGTCGATCGTTCCAGC
GAAGAATTTTTCTGGTTCCGTCCTTGTATTTTTTCCCCTTTTTTGTTGAA
CTGCTTCGGGTTATTGCCATGTTTTGTGGCTTGAGAAGTGTAGCAGGTGT
CGAAACAGGTTTTGAAGCTTTCGTAGGCGGCGCTTATCCCCTCCACGAGA
TTACTGCTACACTGCCACAAGGCTCGAAAACTCTACAAGATTGATTATTC
AAAGACTTGCTTGACTAAGGTTGCCGGTTTGGCATGCCTCTCTTTCTTCC
ACGTGAACGGCCCTCGACTTCGTTTGACGCCTGTGCGATAGCGGGGCACT
TGCTCGTTTTTGTGTGGATCCGTCTGTTATCTTTCGACGCCTCTTGCAAG
GGAGAAAACAAAGACAACATCCTACTATTATGATAGAGGTTGAGCTCCGT
TTGTGTGTCTGGTGTATCACCAGAACAGCGCTTTGCCTCCATCTCCTCTC
CTTCTCGCCTCTGTCGCTCAGAAGCGCACCTCGCTCGCGTTCCGTGTAGC
GGGAAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:537856..544911-

>mRNA_Ecto-sp6_S_contig11.1220.1 ID=mRNA_Ecto-sp6_S_contig11.1220.1|Name=mRNA_Ecto-sp6_S_contig11.1220.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:537856..544911- (Ectocarpus species6 EcLAC_371)
ATGAGCAGTATCATCCCGTTTTTCGTTTCCTGCCACAAACGCGTGTTACC
CGAGTTGCCGTTGGCTGATGCTGCGCTCTCTCTGCCCATGGCCTACCCCA
GGGGGCTGAGGCGAGCGGAGACCGGGCCAAGACTGGTCCCAAACGCTGAG
TGCCACGTTGGCGAAGGATTCGTGTCGGTCGTGGTGCCTGCGTACAACGA
GGGAGATGGGGTCAAGTTGACGCTCGCCACCATCGATGAGCTGGCCCAGG
ACAAGTCGCTGGTTGAGATTATCGTGGTCGATGCCGGTTGCAAAGACCAC
ACGATGGAGGCCGTCGCCTCCATGAAGCTCGACGTCAAACTCAGCACGAC
AACCTCTGTGGGCGGGCGCGGACCGGCTCTCAACGCCGGGGCGCGGATGG
CGAAAGGAGACCTTCTTCTGTTCGTGCACGCGGATACGATTGTGCCCCCG
GCGTTCGACGTGACCCTCCGCAAGGCTTTCCGGGATCCTGAGATACTCAT
GTCCACGTTCCTGTTCGGGATCAACCGGGCTCTGCTCCGCGGGAAGGAGC
CGTTCGGGATGGCTGTCATGGAGAGGGTGACCAACTACAGGACCCGCGTC
ATCCACCTTCCGTACGGCGACCAGGCGAGTCGGGCTTTCTGCTTCACGGC
GCACAAATTCGCCGAGATGGGAGGGTTCCCGGACATCGTGATGATGGAGG
ACTTCGAGGTGGTGAGGCGTCTGCGAAAGGAAGAGCTTGCCGGCGGAGGG
CACATACACGTCCTGGACGAGGCGGCGCTGTGCAACCCCCGGAGGTGGGA
ACAGCCAGGCAACAACCCTTTCGTGAATTTCTGGAAGAACTGGGTGTTTT
TGTTTCTGTATTCCAAGTTGGGCTTCTCCCCCGAACAAATCTTCCGGCTC
TACTACGGCCGTGACCCGGACCCCATCGTCGTCGCCGATGACTCTCACTC
TCTTGATGCCGGGTCCGGCGGCAAAATTCTTGACGATCAAGCTCACAACT
CCGCCGAGCCAGCGCCTTCCCGCTAA
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