mRNA_Ecto-sp6_S_contig11.1215.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1215.1
Unique NamemRNA_Ecto-sp6_S_contig11.1215.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:504074..505396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1323
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_006650.1
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.041518-UTR-Ecto-sp6_S_contig11:504073..5041611682348777.041518-UTR-Ecto-sp6_S_contig11:504073..504161Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 504074..504161 +
1682348777.0613925-UTR-Ecto-sp6_S_contig11:504365..5053961682348777.0613925-UTR-Ecto-sp6_S_contig11:504365..505396Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 504366..505396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348777.0517547-CDS-Ecto-sp6_S_contig11:504161..5043651682348777.0517547-CDS-Ecto-sp6_S_contig11:504161..504365Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 504162..504365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1215.1prot_Ecto-sp6_S_contig11.1215.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 504162..504365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1215.1

>prot_Ecto-sp6_S_contig11.1215.1 ID=prot_Ecto-sp6_S_contig11.1215.1|Name=mRNA_Ecto-sp6_S_contig11.1215.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=68bp
MRYSGGGLLRMLADWQRIFPSQDRRRGRSANEAPGCSKLFLSTFNISCTC
ETIGTQTRMHACMFFNR*
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mRNA from alignment at Ecto-sp6_S_contig11:504074..505396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1215.1 ID=mRNA_Ecto-sp6_S_contig11.1215.1|Name=mRNA_Ecto-sp6_S_contig11.1215.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1323bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:504074..505396+ (Ectocarpus species6 EcLAC_371)
GTTTATCGGAGAGTTTGTGAACTTATCGTAAGGAGTGTGTAACTGCTTCA
AGAGTAGATTTGTTCATTATGCGCAATGTGTGCCATTTATGCGGTATTCG
GGGGGCGGGCTGTTAAGAATGTTGGCTGATTGGCAGAGGATTTTTCCTTC
TCAGGATCGGAGGAGAGGTCGATCGGCCAATGAGGCTCCCGGGTGTTCGA
AATTATTTCTGAGCACTTTCAATATTAGTTGTACTTGTGAAACGATTGGC
ACTCAAACACGCATGCATGCTTGCATGTTCTTCAACCGGTAGGTAGTCGG
CACAGCAGGATGCGCGCACCGGAGGAAGTAAATTCATTTTCGTGGTGTTC
ATGAAAGGGGTGTGTGTCATGAAGAGGGAGGGAAAAGACGGAAAAGAACG
GGGGACGTTGGGTTTTTTTTTCGTCCTCATTCTCACACGACGAGCGTGCG
GATGGGGTGCGGAAAGGTATCGGTTTTACGTAGCTGGACGCAATTTTCTG
GCTCGTAGCGTGCGTGTGTGTGTAGTCGGGAGAGATTTCCTCGTCTGCTT
TCGGGAGTTCACGACGAATAGTCCACACCTGCTCTGGGGATTGGCAGGAT
AGTTGTTAGTTGCGGTTGGTTTGTCGTACTATATATCGTTGTTTCAATCT
CAACCTGCAGTCTACTGCTGCCTGTTGTCGTTCCCCAGTGGGTCGGGGCT
CATAGCGTCTGCTAGTAGTTTTGGTGTGAAATGGGGAACAAGCGTTTCGC
TCTTTTTCTTTTTTTTTCATTTCGTGCCGGGGTGTAGACGTAAGGGTTTG
AATCGACGCCCCGTATATGCGAGAGGCCGTGCCGTTGTGTTGTAGCTTCT
CACAATTCACAAGTCGCTATTGATTGGTAGACTAGTCTACAGTACCGAGC
GTGCAGTGATGTATGTATGCAGACGGCACGCGGGTCGGTATGTATATCAG
GCACGTGCATATTGCACATCAATGCGGATGGTTACTGCTGTAGTCTAGGT
GTGCAGCAACATTTATTTACACATACACGTCTTACTAGCTGGGCCGGACA
CGTAGTAAGTATGGATCACCGTCAAGTGCACCCTTTCAGTTTTAACAGTC
GGACCGCCCCCATCGTCTTCGTTTGCTGTCTTTTCTTCTCACGGGCACCG
ACGAGCAAGTGAGTTTCTTGTGGGTTGAGGCGGCGGGCACGACAGATGAT
ATTATTGTCTACACTTTGTTGTGCCCGAGACTGTAACGGCTTAGACTAGA
CCCCCTCCCCCGTGCCCCTGCTCTTGCTCGGCTCGGGGAAGGAATGAGTT
GAAACAACGAGATTCCACATCTA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:504074..505396+

>mRNA_Ecto-sp6_S_contig11.1215.1 ID=mRNA_Ecto-sp6_S_contig11.1215.1|Name=mRNA_Ecto-sp6_S_contig11.1215.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:504074..505396+ (Ectocarpus species6 EcLAC_371)
ATGCGGTATTCGGGGGGCGGGCTGTTAAGAATGTTGGCTGATTGGCAGAG
GATTTTTCCTTCTCAGGATCGGAGGAGAGGTCGATCGGCCAATGAGGCTC
CCGGGTGTTCGAAATTATTTCTGAGCACTTTCAATATTAGTTGTACTTGT
GAAACGATTGGCACTCAAACACGCATGCATGCTTGCATGTTCTTCAACCG
GTAG
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