mRNA_Ecto-sp6_S_contig11.1182.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1182.1
Unique NamemRNA_Ecto-sp6_S_contig11.1182.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: D7FY28_ECTSI (Phosphotriesterase-related protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY28_ECTSI)

HSP 1 Score: 858 bits (2217), Expect = 3.230e-310
Identity = 446/457 (97.59%), Postives = 450/457 (98.47%), Query Frame = 1
Query:   82 MIPTVLLQVAADAVAGACSSREELLHRATTSSMTAFHDNPITLANLCEARSSGDADRFRLFSLDEGVQELASLKDAGAGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGTSSAAPSSAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAVELEGAAIAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQHGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAASK 1452
            MIPTVLL VAADAVAGACSSREELLHRATTSSMTAF DNPITLANLCEARSSGDADRFRLFS DEGVQELASLKDAG GLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHG SSAAPS APSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAA+ELEGAA+AQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQ GTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFA+RIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIG+MTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAASK
Sbjct:    1 MIPTVLLPVAADAVAGACSSREELLHRATTSSMTAFQDNPITLANLCEARSSGDADRFRLFSFDEGVQELASLKDAGGGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAASK 457          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A8K1CPN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPN4_PYTOL)

HSP 1 Score: 119 bits (299), Expect = 3.040e-25
Identity = 135/500 (27.00%), Postives = 192/500 (38.40%), Query Frame = 1
Query:   82 MIPTVLLQVAADAVAGACS---SREELLHRATTSSMTAFHDNPITLANLCEARSSGDADRF-RLFSL-----------------DEGVQELASLK--DAGAGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQ-----TNGTAQYEASPETISKELEHQLLFGEHGTSSAAPSSAPSPAGAAVAESASAPARIQAGFLL----------VKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAVELEGAAIAQQATGAPLMIACSHFVRWPMVVAALVIATA-HWGSSQHGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEW----LPGPDYY------PSDEESAVRIAELVRQ-GFADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLR-LGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1428
            M+ TV   VAA++ +G+ S     E L+HR    S    H     +A   +A   GD  +  +L  L                 DE  +E+ +L     G G++V+ +T +EGRD + L  ++ R    +V   S  +       G    EA  E ++K LE +L+FG  GT                         + AG +           V L     R  A V+  T      + S A+ T                  QQA+   ++      ++       +VI  A HW                              ++     L  +G++L FD  G        L  P         P D   A  IA L+   G   ++++S+ V+ R    R+GG GY +  R    RL    GV+      + RDN LGLL WYTPP    IPK +L C  CKK FEP+ GEYF KFQF+YC  KCLR H   GF
Sbjct:    4 MLMTVRGAVAAESHSGSVSWVLPHEHLIHRI---SKRLTHAQSPPIAGATDASKIGDEIQMDQLHELRMNPSAYGGRNLIMEREDEVFREVEALTTFQPGVGVVVDVTTVSEGRDLAKLRRLAERLQCHVVASTSYDEHAIKTLPGDLIIEAKAERVAKTLETELMFGVEGTDP----------------------NVNAGVIYQQIHLDSSRDVLLDEVLARGLAMVQANTTVPVYLSFSSAEST------------------QQASSQRILDWIDALIKANATPQRIVICHADHW----------------------------CDNIAFLVELGRRGVMLSFDAIGLYTVSDVSLTSPSLDRDSSEPPRDSTIARAIASLINNHGLTQQLLVSTNVTLRTQFQRYGGGGYAYLFRHFKGRLAEDFGVTEAHWTQIVRDNALGLLTWYTPPEAAAIPKHFLLCSICKKPFEPIVGEYFTKFQFIYCGTKCLRKHSKLGF 432          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A329S0I0_9STRA (Phosphotriesterase-related protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0I0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.330e-25
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 1
Query: 1015 EWLPGPDYYPSDEESAVR-IAELVR--QGFADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAH 1413
            E +   D  P  +   V+ IA LV+    ++ +I+LS+ V +R    R+GG GY +       RLLR GVSA   G++ R+N++ LL WY PP    IPK+YL C  C+K FEP+EGEYF KF F+YC  KCLR H
Sbjct:  296 ESMDNEDQQPPPDSRLVKWIASLVKIKPQYSSQILLSTNVHQRIQYRRYGGGGYTYLFEHFKHRLLRQGVSAAQWGLIMRENVVDLLAWYVPPEAPPIPKNYLQCSICEKYFEPIEGEYFTKFTFIYCGTKCLRRH 431          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A485LDY2_9STRA (Phosphotriesterase-related protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDY2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.120e-24
Identity = 70/160 (43.75%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  979 GIVLCFDCFGRV---EWLPGP-----DYYPSDEESAVRIAELVRQG--FADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1428
            G+ L FD  G     + LP P     D  P D +    + +L+      A R++++S VS+    +R GG G  HAL +   RL   GV+A     MT  N L LL  YTPPPP E+PKDYL C  C + FEP+ GEYF KF FVYC+ KCLR HR  GF
Sbjct:  237 GVYLSFDLLGLYAVSDHLPFPSSSSQDGPPRDADIVSCLVQLLAMNPAHAVRLLVTSTVSQTIQYTRHGGGGMTHALTSGRARLAAAGVTADQWNAMT--NPLSLLQCYTPPPPAELPKDYLVCSICARPFEPIVGEYFTKFAFVYCSTKCLRKHRIAGF 394          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A2D4BQ76_PYTIN (Phosphotriesterase-related protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ76_PYTIN)

HSP 1 Score: 114 bits (285), Expect = 1.840e-23
Identity = 118/412 (28.64%), Postives = 177/412 (42.96%), Query Frame = 1
Query:  271 DEGVQELASLKDA--GAGLLVECSTAAEGRDPSGLAEISRRTG-LGIVLGASCQQT-----NGTAQYEASPETISKELEHQLLFGEHGTSSAAPSSAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAVELEGAAIAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQHGT---AXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLS---------KGIVLCFDC--FGRVEWLPGPDYYPSDEESAVRIAELVRQ-GFADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRL---GVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1428
            DE  +EL SL  +  G G++++ +T+ EGR    L  +S+R   + IV   S Q +     +    +E   E I+K LE +LLFG   +S                        ++AG +  ++        AA+ + T           +D          +   G A+AQ  T AP+ ++ S+      ++  +    AH  S +      A       S +V++        + L H+  L+S           + L   C   G VE        P+D   A  I +LV Q     +I++SSGV++R    R+GG G+ HAL     RL+     G+S     I+TR+  + LL WYTPP    IPK +L C  C   FEP+ GEYF KF F+YC  KCLR H   GF
Sbjct:   80 DEVFRELESLSKSVTGHGIVLDTTTSEEGRSADQLRRLSKRLPQVDIVAATSFQPSEIRSLSADLSFEQKAERIAKFLETELLFGITDSSE----------------------EVRAGVIYQQVD-------AALAMTT-----------EDD---------LLARGLALAQANTRAPIFLSFSYASTNDAILGWVSRLEAHGASMECVVVCHADRWCDSDSGEVLL--------RELGHRRMLVSFDWIGLYTISDVALVNPCHSIGHVE-------PPNDRAIARCILKLVHQHNMEHQIMISSGVTQRLQFQRYGGGGFSHALLHFRRRLMTQEXPGLSPSQWRIITRETPMRLLAWYTPPEAAPIPKHFLLCSICATPFEPIVGEYFTKFSFIYCGTKCLRKHSKMGF 427          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: W2PXT5_PHYPN (Phosphotriesterase-related protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PXT5_PHYPN)

HSP 1 Score: 113 bits (283), Expect = 3.330e-23
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 1
Query: 1042 PSDEESAVRIAELVRQG--FADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAH 1413
            PSD   A  IA L++    ++ +I+LS+ V +R    R+GG GY +       RLLR G+S      + R N++ LL WY PP    IPK+YL C  C+K FEP+EGEYF KF F+YC  KCLR H
Sbjct:  295 PSDSRLAKWIAGLMKTKPQYSSQILLSTNVHQRIQYRRYGGGGYTYLFEYFKHRLLRQGISEAQWDQIVRTNVVDLLAWYVPPEAPPIPKNYLQCSICEKYFEPIEGEYFTKFTFIYCGTKCLRRH 420          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A662Y8Z7_9STRA (Phosphotriesterase-related protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Z7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.160e-22
Identity = 55/137 (40.15%), Postives = 74/137 (54.01%), Query Frame = 1
Query: 1042 PSDEESAVRIAEL-VRQGFADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAAS 1449
            P D   A  +A   ++  +  +I+LS+ V +R    R+GG GY +      PRL RLG++      + R N + LL WY PP    IPK+YL C  C   FEP+EGEYF KF F+YC+ KCLR H    F    A +
Sbjct:  349 PPDSRLAKWVASFAIQHKYLHQILLSTNVHQRIQYRRYGGGGYTYVFEYFQPRLQRLGITVAQWDQLVRGNAVELLAWYVPPEAPPIPKNYLQCTICGNFFEPIEGEYFTKFAFIYCSTKCLRRHSRQKFATPPATA 485          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: D0N4W7_PHYIT (Phosphotriesterase-related protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N4W7_PHYIT)

HSP 1 Score: 107 bits (266), Expect = 2.350e-21
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1069 IAELVRQGFADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAH 1413
            I  L    +  +++LS+ V +R    R+GG GY +      PR LR GVS      + R N++ LL WY PP    IPK+YL C  C   FEP+EGEYF KF F+YC  KCLR H
Sbjct:  245 IGLLAVSDYCSQLLLSTNVHQRIQYRRYGGGGYTYLFDHFKPRFLRRGVSEAQWEQIVRSNVVDLLAWYEPPEAPPIPKNYLQCSICANYFEPIEGEYFTKFTFIYCGTKCLRRH 359          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A5D6Y6N1_9STRA (Phosphotriesterase-related protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6N1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.350e-20
Identity = 138/482 (28.63%), Postives = 201/482 (41.70%), Query Frame = 1
Query:   61 SPAGSSIMIPTVLLQVAADAVAGACSSREELLHR-ATTSSMTAFHDNPITLANLCEARSSGDADRFRLFSLDEGVQELASLKDAGAG----LLVECSTAAEGRDP--SGLAEISRRTGLGIVLGASCQQTNGTAQYEAS------PETISKELEHQLLFGEHGTSSAAPSSAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAVELEGAAIAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQHGTAXXXXXXXSRKVIVAGMH--------GGVSQSLH---HQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAD--RIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1428
            +PA + +   +V   VA DAVA      E +LHR A   + +A       L  L  A ++ D     L   D+  +EL +LK   A     ++V+ +  +EGRD   +  A ++ R G+ IV  A+C     +A +          E ++K LE +L+FG     + A    P   GA   +  +A   + A   +V        + A V+  T A    + S A D  GG       E E     QQ     L +  +H V      A +V+  A         A        R V+  G+           VS ++      A + S+  VL           P     P D   A  IA L+R   A   +++LS+ + +R    R GG GY         RL R GV+ +    + R N + LL WYTPP    +PK++L C  C + FEPV GEYF KF+F+YC  KCLR H   GF
Sbjct: 1196 APAAAVLNSTSVRGDVAPDAVA-LVLPHEYVLHRIALGPAASAAGLRSEDLRELRVAPAALDGQNLVLEKEDDAFRELEALKALTATGQTLVVVDVTVPSEGRDEFMAKRARLAERLGVHIVTVATCDVIAASAGFPLGLAPLEKGERLAKALETELVFGFGAADTTAARYCP---GAIYQQVHAASPALSADGSVVA------HAIALVQQRTTAPVYLSFSLATDDSGGNSGGPQRETEH----QQLVLNWLRVLLAHGVD----SAKIVVCHADQWCETEEAAGGTPYGFLRSVLQLGVRLLFTMVGLAAVSDAIMINPRLAGVPSRAAVLA----------PTAREPPRDSSIARCIAWLIRDKDASVRQLLLSTNIQQRVQYLRHGGGGYAFLFSHFRERLARYGVTDRHFQQLVRTNPVELLGWYTPPVAAAVPKEFLRCSICSRDFEPVVGEYFTKFEFIYCGTKCLRKHSRQGF 1649          
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Match: A0A484EDX9_BRELC (Phosphotriesterase-related protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDX9_BRELC)

HSP 1 Score: 105 bits (261), Expect = 2.200e-20
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query: 1021 LPGPDYY--PSDEESAVRIAELVRQG--FADRIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1428
            LPG +    PS    A  IA +++    +  +++LS+ V +R    R+GG GY +  +     +L  GVSA     + R N++ L  WY PP    IPK+YL C  C+K FEP+EGEYF KF F+YC  KCLR H    F
Sbjct:  289 LPGTNSQEPPSHRCIARTIANIIKINPQYCHQLLLSTNVHQRIQYRRYGGGGYTYLFKYFKTYVLGQGVSAAQWDQIVRGNVVKLWAWYVPPEVPPIPKNYLQCSICEKHFEPIEGEYFSKFTFIYCGTKCLRRHSRQNF 428          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY28_ECTSI3.230e-31097.59Phosphotriesterase-related protein n=2 Tax=Ectocar... [more]
A0A8K1CPN4_PYTOL3.040e-2527.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329S0I0_9STRA3.330e-2544.85Phosphotriesterase-related protein n=2 Tax=Phytoph... [more]
A0A485LDY2_9STRA1.120e-2443.75Phosphotriesterase-related protein n=1 Tax=Aphanom... [more]
A0A2D4BQ76_PYTIN1.840e-2328.64Phosphotriesterase-related protein n=1 Tax=Pythium... [more]
W2PXT5_PHYPN3.330e-2345.24Phosphotriesterase-related protein n=8 Tax=Phytoph... [more]
A0A662Y8Z7_9STRA8.160e-2240.15Phosphotriesterase-related protein n=2 Tax=Nothoph... [more]
D0N4W7_PHYIT2.350e-2144.35Phosphotriesterase-related protein n=2 Tax=Phytoph... [more]
A0A5D6Y6N1_9STRA1.350e-2028.63Phosphotriesterase-related protein n=1 Tax=Pythium... [more]
A0A484EDX9_BRELC2.200e-2040.00Phosphotriesterase-related protein n=1 Tax=Bremia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:142436..145650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score115.2
Seed ortholog evalue8.3e-23
Seed eggNOG ortholog4792.ETI40698
Model size1985
KEGG koko:K07048
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.zinc ion binding
EggNOG OGs2RDJM@2759,3QEFP@4776,COG1735@1
Ec32 ortholog descriptionAryldialkylphosphatase
Ec32 orthologEc-27_006880.1
Cds size1374
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1182.1prot_Ecto-sp6_S_contig11.1182.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 142517..145120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348773.2947152-UTR-Ecto-sp6_S_contig11:142435..1425161682348773.2947152-UTR-Ecto-sp6_S_contig11:142435..142516Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 142436..142516 +
1682348773.3380327-UTR-Ecto-sp6_S_contig11:145120..1456501682348773.3380327-UTR-Ecto-sp6_S_contig11:145120..145650Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 145121..145650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348773.3040411-CDS-Ecto-sp6_S_contig11:142516..1428611682348773.3040411-CDS-Ecto-sp6_S_contig11:142516..142861Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 142517..142861 +
1682348773.3126059-CDS-Ecto-sp6_S_contig11:143326..1440481682348773.3126059-CDS-Ecto-sp6_S_contig11:143326..144048Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 143327..144048 +
1682348773.321192-CDS-Ecto-sp6_S_contig11:144513..1447631682348773.321192-CDS-Ecto-sp6_S_contig11:144513..144763Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 144514..144763 +
1682348773.3285763-CDS-Ecto-sp6_S_contig11:145063..1451201682348773.3285763-CDS-Ecto-sp6_S_contig11:145063..145120Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 145064..145120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1182.1

>prot_Ecto-sp6_S_contig11.1182.1 ID=prot_Ecto-sp6_S_contig11.1182.1|Name=mRNA_Ecto-sp6_S_contig11.1182.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=458bp
MIPTVLLQVAADAVAGACSSREELLHRATTSSMTAFHDNPITLANLCEAR
SSGDADRFRLFSLDEGVQELASLKDAGAGLLVECSTAAEGRDPSGLAEIS
RRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGTSSAAPS
SAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATAT
AGSPAQDTHGGLGRAAAVELEGAAIAQQATGAPLMIACSHFVRWPMVVAA
LVIATAHWGSSQHGTAAAAAAATSRKVIVAGMHGGVSQSLHHQASLLSKG
IVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFADRIILSSGVSR
RFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGIMTRDNMLGLLDWYTP
PPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFD
ADAAASK*
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mRNA from alignment at Ecto-sp6_S_contig11:142436..145650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1182.1 ID=mRNA_Ecto-sp6_S_contig11.1182.1|Name=mRNA_Ecto-sp6_S_contig11.1182.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3215bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:142436..145650+ (Ectocarpus species6 EcLAC_371)
GTGTACGAAGCAGCAGACAGCATGTAAGCACACACACCTCAGTCCTGACC CTAGACTATATCTCCAGCTGGCAGTTCCATCATGATCCCCACGGTATTAT TACAGGTAGCCGCAGACGCTGTTGCCGGCGCCTGCAGCTCGCGGGAGGAG CTGCTGCACAGGGCGACTACCTCTAGCATGACTGCATTCCACGACAACCC CATCACCCTGGCTAACCTTTGTGAAGCAAGAAGCAGCGGTGACGCAGACC GCTTCCGATTGTTCTCGCTCGACGAAGGCGTTCAGGAGCTAGCGTCGTTG AAGGATGCCGGGGCTGGGTTGTTGGTAGAGTGCTCGACGGCCGCAGAGGG ACGGGATCCCTCAGGCCTGGCAGAGATTTCGAGGAGAACCGGTTTGGGGA TTGTGCTGGGCGCTTCGTGCCAACAGGTATGGGTGTCGTATACATGGTGC GGTTCATGTCTTTTGCAGCAGTGCCTAAAAATAGAGGTCCAATCTCCCCC TGTTGCTGAACCTGTGGTCGTATTTTTGGTAAGGACCGCGGAACAGGTCT TCGACAATCTGTCATTCCAGCGCCGCCCACTATTTCACACCTCAACAGCA GTAACTCGGGTCACATGCATCGCTTCATATGAAAAGCTGTACGTCTTGCA GTTTTCGACGCTGCTATCTACCGCGCGCGAGCTGGCCTGGTTGAAGTTTA AAGAAAGACCACGCCGTGCGTGCCCCGAAGAAGAATGCAATTAACATGGA GTGTGAGTGTCTAATGGTAGGGCCCCGGCAGAAAGATGTTTCAGCAAACA TGCTGCTGCTCAAATGTTTGCTGCTCTCAAGGCTACAGTAGATCTTATCC GTGTTGCGCCCCATCCCTGTGTGTTCTTGTAAACCTACCAGACCAACGGG ACAGCCCAATACGAGGCATCACCAGAAACAATCAGCAAGGAGCTTGAGCA CCAGCTTCTGTTCGGGGAACACGGCACCTCCTCTGCCGCTCCTTCCTCTG CACCTTCCCCTGCTGGCGCTGCCGTGGCGGAATCTGCCAGTGCGCCTGCC AGGATCCAGGCGGGCTTTCTCCTTGTCAAGCTGAGCAGCAGTTGTTGCCG CAGTCCAGCTGCAGTCCGCGTAGAGACGCCAGCAGCGACGGCTACAGCGG GGTCTCCTGCTCAAGACACCCACGGGGGACTTGGGAGAGCCGCCGCAGTC GAGCTGGAAGGTGCGGCAATAGCGCAGCAAGCCACGGGAGCACCGCTCAT GATAGCATGCTCTCATTTCGTTCGTTGGCCAATGGTGGTAGCCGCCCTGG TGATCGCAACCGCACACTGGGGAAGCTCACAACATGGCACCGCTGCTGCT GCTGCTGCTGCTACGAGTAGGAAGGTTATCGTGGCAGGGATGCATGGGGG CGTGTCTCAATCTCTTCACCACCAAGCTTCGCTGCTGAGCAAAGGCATTG TATTGTGCTTCGACTGTTTCGGGAGGGTGGAGTGGTTGCCTGGGCCGGAC TACTACCCTTCGGACGAGGAGAGCGCGGTGCGGATTGCGGAGCTTGTTCG TCAGGGATTCGCAGACCGGATTATCTTATCGTCGGGAGTGTCAAGGCGCT TTCATCTGTCCAGGTGGGAACCTACCCCAGAGACACATGCAGACAGACGC AACGATGCGGTTGATTGCTGGGAAGCTCTTTTTCTGGCTCAGGAGAAAAA TTCGAGTAGCATCTCCTACGCGGTGTGCAAATCAAATATTAAAGTAGGTG GTGATCGCCCCTCTCTTCGAACACAAGGCGTTCAGAGGCCAATCGATGCG TAGATGGGCACCACACGTTGTTGTGGGTCTACAGCCTTGTGAGGTCAGAC ATCTTTGCTACCCTTGCCTACGGTGTCCGTAAGGACCCCCGCTTCCTGCA CCTCTTTTCCCCTATAATGCGTGCAGCGCTCACCACCTCCAGTTAGAGTT CCTGTAAACGTCAACTTTATAGCATGCAACCACAAGTGTTCCTGTCGGTC ACGTGTTGTATGACCTATACTCAACTTCGCACCACCATTGTGTGAACACC TCGCGCTTGTTCATGAACCCACCCAAAGATTCGGGGGTTATGGCTACGGC CACGCCTTGCGGACGGTCCCACCACGCCTACTACGACTCGGGGTTAGCGC GAAAGACATCGGGATTATGACAAGGGATAACATGCTGGGCCTTCTGGACT GGTACACCCCGCCTCCTCCAATAGAGATCCCGAAGGATTACTTGCCGTGC TGCTGGTGCAAGAAGCGCTTCGAACCGGTGGAGGGGGAGTACTTCCATAA GTTTCAGTTCGTGTACTGCAACATCAAGGTGGGCCGCCGCAATAGTTTTA GCACGGCATGGCATGGCGCTTTAAACGACGCGAGAGGCCTTTACCCCCAA GCGCTGCGATTTCCTGGAGTTGTACTGCCTTCGTTGAGTTGTATCTGCCG TAGAGCGCCGCAGCAGGCGCGCGACGCGCCGCGAAACATACTGTACCACG TTCTTCCCGACAGTCGCATGCGGTGTTTTGTGCCAGGTACATATCTTGTA CTGACATTTTTGCTGACTCGCATCTCTCGGTCTCCTTTGTATCCACGCGT GTCTTCGAAACTCCCTCCTCTGCTCAAGTGCCTGCGAGCTCACCGAGACA CCGGGTTCGATGCTGATGCTGCCGCCAGTAAGTAGGGCGGCGTAACAAGG GATCGGAATTTCTTCTTGCCACGCCGGTCCTCATTTAGGTGCTGCTGTAA AATGATAGTTGTTCTGGGAACTATTGCGAATGCGTCCATATTTCGTTGAT GTAGTAACAAACAAGGAATGTTTTACATAGCCGTGCGGTCGTCGTGCCGA CTACTGCTGTAGCACAACAGCTGACATTGACAACACTGGCATCACTGATA TCTCCAGCGGCTAATGAGTCAGCTGAAAGTTACCGGAAGTTGCTCCAGGT GGATGTATCATCATCCATCTAGCCCGGAGGATGATGTCCGTTGAAAGAGG AGTGGGTCCATCAGGCGGCGAAACGTAGTCGCCGACGCGGCTCTTGGGTT CAGCTTAGCCTCACTCCAGTTTGAGGAGGCACCGTTGAAACCATGCTTTC GCAAGCGACAGCCCATGGGCTCCGCAGTGAGTGGAGCGTCTACGTACGCC GCCGTAGATAACTGCCGGTCATTTTGGGTCGACCGGGTTTCGCAGCACGA CGTAAATCGGTCATT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:142436..145650+

>mRNA_Ecto-sp6_S_contig11.1182.1 ID=mRNA_Ecto-sp6_S_contig11.1182.1|Name=mRNA_Ecto-sp6_S_contig11.1182.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1374bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:142436..145650+ (Ectocarpus species6 EcLAC_371)
ATGATCCCCACGGTATTATTACAGGTAGCCGCAGACGCTGTTGCCGGCGC
CTGCAGCTCGCGGGAGGAGCTGCTGCACAGGGCGACTACCTCTAGCATGA
CTGCATTCCACGACAACCCCATCACCCTGGCTAACCTTTGTGAAGCAAGA
AGCAGCGGTGACGCAGACCGCTTCCGATTGTTCTCGCTCGACGAAGGCGT
TCAGGAGCTAGCGTCGTTGAAGGATGCCGGGGCTGGGTTGTTGGTAGAGT
GCTCGACGGCCGCAGAGGGACGGGATCCCTCAGGCCTGGCAGAGATTTCG
AGGAGAACCGGTTTGGGGATTGTGCTGGGCGCTTCGTGCCAACAGACCAA
CGGGACAGCCCAATACGAGGCATCACCAGAAACAATCAGCAAGGAGCTTG
AGCACCAGCTTCTGTTCGGGGAACACGGCACCTCCTCTGCCGCTCCTTCC
TCTGCACCTTCCCCTGCTGGCGCTGCCGTGGCGGAATCTGCCAGTGCGCC
TGCCAGGATCCAGGCGGGCTTTCTCCTTGTCAAGCTGAGCAGCAGTTGTT
GCCGCAGTCCAGCTGCAGTCCGCGTAGAGACGCCAGCAGCGACGGCTACA
GCGGGGTCTCCTGCTCAAGACACCCACGGGGGACTTGGGAGAGCCGCCGC
AGTCGAGCTGGAAGGTGCGGCAATAGCGCAGCAAGCCACGGGAGCACCGC
TCATGATAGCATGCTCTCATTTCGTTCGTTGGCCAATGGTGGTAGCCGCC
CTGGTGATCGCAACCGCACACTGGGGAAGCTCACAACATGGCACCGCTGC
TGCTGCTGCTGCTGCTACGAGTAGGAAGGTTATCGTGGCAGGGATGCATG
GGGGCGTGTCTCAATCTCTTCACCACCAAGCTTCGCTGCTGAGCAAAGGC
ATTGTATTGTGCTTCGACTGTTTCGGGAGGGTGGAGTGGTTGCCTGGGCC
GGACTACTACCCTTCGGACGAGGAGAGCGCGGTGCGGATTGCGGAGCTTG
TTCGTCAGGGATTCGCAGACCGGATTATCTTATCGTCGGGAGTGTCAAGG
CGCTTTCATCTGTCCAGATTCGGGGGTTATGGCTACGGCCACGCCTTGCG
GACGGTCCCACCACGCCTACTACGACTCGGGGTTAGCGCGAAAGACATCG
GGATTATGACAAGGGATAACATGCTGGGCCTTCTGGACTGGTACACCCCG
CCTCCTCCAATAGAGATCCCGAAGGATTACTTGCCGTGCTGCTGGTGCAA
GAAGCGCTTCGAACCGGTGGAGGGGGAGTACTTCCATAAGTTTCAGTTCG
TGTACTGCAACATCAAGTGCCTGCGAGCTCACCGAGACACCGGGTTCGAT
GCTGATGCTGCCGCCAGTAAGTAG
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