mRNA_Ecto-sp6_S_contig11.1179.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1179.1
Unique NamemRNA_Ecto-sp6_S_contig11.1179.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 706 bits (1822), Expect = 7.990e-256
Identity = 363/382 (95.03%), Postives = 371/382 (97.12%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFANR 1146
            IRWVNLWPSQSFSEGVASRVLSNEPE TAGEDGDS+EDGDATQRGISWT ISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAK+RARNEVPRALRGDVSTSEFPTALLGT PQQ+NLDDGWSA RQ SGTIQSPQLMEHQAVSSWDSTGGGDSTNEQ+RGRTNTRAG+ IGQVS+CRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMV RT RVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQ  DEDARRNADWFRIGFEPLFADFTQAGSWFI+YTLIEWAVLACIAVLVDN+AVQCG FCAIHSMTFILLVACKPFANR
Sbjct:    6 IRWVNLWPSQSFSEGVASRVLSNEPESTAGEDGDSEEDGDATQRGISWTVISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKQRARNEVPRALRGDVSTSEFPTALLGTRPQQKNLDDGWSAGRQTSGTIQSPQLMEHQAVSSWDSTGGGDSTNEQKRGRTNTRAGSSIGQVSQCRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVVRTHRVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQTTDEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLVDNTAVQCGLFCAIHSMTFILLVACKPFANR 387          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 552 bits (1423), Expect = 4.820e-180
Identity = 293/389 (75.32%), Postives = 322/389 (82.78%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQ--------RVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            +RWVNLWPSQSFSEGVAS VL NEPEPT+GED DS+EDGD+TQRGISWT ISDVGSFLFMGNLALFAGF + IFS+HIL+ASA+EAYWLAK+RARNE+PRAL GD+STS   TA              WS  R     IQSPQLMEHQA+ SWDSTG  DSTN Q+  RTNTRAG+ IGQVSECRELSQSAWLHYPHLELVFL FAFEGAVTSQVSALR+TSSSTVFYAAVATL    +  +A ++           RVRVRSDALIVFTSN++DEGSTG S++YSK + GL+KDSSLFAWADKG W TVQ ADEDARR+ADWFRIGFEPL+ADFTQAGSWF +YTLIEWA LACIAVLVDNSAVQCG FCA+HSMTFILLV CKPFAN
Sbjct:  138 LRWVNLWPSQSFSEGVASWVLCNEPEPTSGEDDDSEEDGDSTQRGISWTVISDVGSFLFMGNLALFAGFFVIIFSVHILLASAVEAYWLAKQRARNEIPRALGGDLSTSGSSTA--------------WSGTR----AIQSPQLMEHQALPSWDSTGRNDSTNVQEAARTNTRAGSSIGQVSECRELSQSAWLHYPHLELVFLFFAFEGAVTSQVSALRSTSSSTVFYAAVATLTGCNLSRIATMSILGFILFDVRGRVRVRSDALIVFTSNKTDEGSTGKSTLYSKMVTGLKKDSSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFAN 508          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 6.100e-160
Identity = 253/381 (66.40%), Postives = 301/381 (79.00%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            +RWVNLWPS+SFSEG+ASR++S+EP      D  SDED D T   IS T  S+VGS LFMGNLALF+G L+ IF+ H+LVAS +EAYW+AK+RAR  + R+LR  +S SE P AL GTW QQ  +DDG SA  Q+SG +QSPQ ME QAVS +D  GG   ++E++ G  NTR G  IGQVS+CRELSQS WLHYPHLEL+FL FAFEGAVTSQ++ALR+ +SST+ YAAVATLV YP+LMV MVART RV V+ DALIVF S+E++E   G  S  S+T++GL+ D SLF+WADKGQWETVQ A++ ARR ADWFRIGFEPLFADFTQAGSWFIIYTLIE AVLA IAVLVDNSA+Q   FCA+HS+TF+LLV  KPFAN
Sbjct:  182 LRWVNLWPSESFSEGIASRIISDEP------DQPSDED-DTTPSAISQTVTSNVGSLLFMGNLALFSGLLVIIFTSHVLVASVVEAYWVAKQRARKVISRSLRRGLSLSEIPIALSGTWSQQPTMDDGSSAGSQSSGIMQSPQRMERQAVSPYD--GGDSKSDEEEGGPRNTRPGNSIGQVSDCRELSQSPWLHYPHLELIFLFFAFEGAVTSQMAALRSANSSTILYAAVATLVLYPLLMVVMVARTHRVWVQPDALIVFASSETEEALAGKPSTLSRTVSGLKNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFAN 553          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: A0A6H5KBY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY1_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 1.830e-122
Identity = 245/506 (48.42%), Postives = 285/506 (56.32%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGD-----ATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAK-----------------------------------------------------------------------------------ERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLV--------FYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIE-----------------------------WAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            +RWVNLWPS+SFSEGVASR+  +EP+   G+D              T+RGIS +   D+GS LFMGNLALFAG L+ IFSLHILVAS IEA+WLAK                                                                                   +RA  E  RAL   +   E  TA+L T  QQ +LD G SA RQ++ T++S  L     +    S  G   +NE++ GRTN R    +G+V ECRELSQS WLHYPHLEL+FL FAFEGAVTSQVSALR+TSSS ++YAA+ TLV         YPVLM AMVART RVRVRSDALIVF SNE+     G    +SK +AG RKD S FAWADKGQWETVQ +D +ARR+ADWFRIGFEPLFADFTQAGSWFI+YTL+E                             WA  A + VLVDNSAVQ G FCA+HS TFILLVA KPFAN
Sbjct:   97 LRWVNLWPSESFSEGVASRIFPSEPDKINGDDDXXXXXXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAGLLVIIFSLHILVASGIEAHWLAKVRNDPTLSCRLVSRAVPQGKTSIRSTISMAGVFGVQIVTIAKPNDGGMGNERRATQSCNGQRMLLTHPPTNKLPSCLCFVLYKQRASREASRALGHGLFLGELSTAILDTRFQQPSLDRGSSAGRQSADTVRSHSLRGPSTLFRGSSDSGDLESNEEEGGRTNARQRKSMGRVLECRELSQSPWLHYPHLELIFLFFAFEGAVTSQVSALRSTSSSKLYYAALVTLVRACEAGAVLYPVLMFAMVARTHRVRVRSDALIVFVSNENRVTWMGRKEFFSKLLAGSRKDFSFFAWADKGQWETVQTSDVNARRDADWFRIGFEPLFADFTQAGSWFILYTLMENADANSISTITFAGALTCRRGNFEVSLMKWAFFAIVGVLVDNSAVQLGLFCAMHSSTFILLVAFKPFAN 602          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: A0A6H5JZX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 1.680e-119
Identity = 251/525 (47.81%), Postives = 286/525 (54.48%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGED-GDSDEDGDATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKER-----ARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIE-----------------------------------------------------------------------------------------------------------------------------------------WAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFANR 1146
            +RWVNLWPS+SFSEGVASR+  +EP+   GED G        T+RGIS +   D+GS LFMGNLALFAG L+ IFSLHILVASAIEA+WLAK R     +  E  RAL   +S  E  TALL T  QQ +LD G SA RQ+S T+QS  L          S  G   +NE + GRTN R    +G+V ECR+LSQS WLHYPHLEL+FL FAFEGAVTSQVSALR+TSSS ++YAA+ TLV YPVLM AMVART RVRVRSDALIVF SNE+     G    +SK +AG RKD SLFAWADKGQWETVQ +D +ARR+ADWFRIGFEPLFADFTQAGSWFI+YTL+E                                                                                                                                         WA  A + VLVDNSAVQ G FCA+HS TFILLV  KPFANR
Sbjct:   57 LRWVNLWPSESFSEGVASRIFPSEPDKIYGEDDGXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAGLLVIIFSLHILVASAIEAHWLAKVRNGPTLSCREASRALGHGLSLGELSTALLDTRSQQPSLDRGSSAGRQSSDTVQSHSLRGPSTPFRGSSDSGDLESNEGEGGRTNARQRKSMGRVLECRQLSQSPWLHYPHLELIFLFFAFEGAVTSQVSALRSTSSSKLYYAALVTLVLYPVLMFAMVARTHRVRVRSDALIVFVSNENRVTWMGKKEFFSKLLAGSRKDFSLFAWADKGQWETVQTSDVNARRDADWFRIGFEPLFADFTQAGSWFILYTLMEFFSKLLAGSRKDFSLFAWADKGQWETVQTSDVNARRDADWFRIGFEPLFADFTQAGSWFILYTLMEASLTPNVAGTGSTSTVDEIQPVMTLTMSSVSPGWQVTKLRKDSLARSTKYTITFTGALTCRWGNFEVSLMKWAFFAIVGVLVDNSAVQLGLFCAMHSSTFILLVVFKPFANR 581          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: A0A6H5KD37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD37_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 2.730e-119
Identity = 247/502 (49.20%), Postives = 282/502 (56.18%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGD-----ATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAK-----------------------------------------------ERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLV--------FYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIE------------------------------------------------------------WAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFANR 1146
            +RWVNLWPS+SFSEGVASR+  +EP+   G+D              T+RGIS +   D+GS LFMGNLALFA  L  IFSLHILVASAIEA WLAK                                               +RA  E  RAL   + + E  TA+L T  QQ +LD G SA  Q+  T++S  L          S  G   +NE++ GRTN R    +GQV ECRELSQS WLHYPHLELVFL FAFEGAVTSQVSALR+TSSS ++YAA+ TLV         YPVLM AMVART RVRVRSDALIVF SNE+     G    +SK +AG RKD SLFAWADKGQWETVQ +D +ARR+ADWFRIGFEPLFADFTQAGSWFI+YTL+E                                                            WA  A + VLVDNSAVQ G FCA+HS TFILLV  KPFANR
Sbjct:  239 LRWVNLWPSESFSEGVASRIFPSEPDKINGDDDXXXXXXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAALLAIIFSLHILVASAIEARWLAKIVTIAKPNDGGMGNERRATQSCNGQRMLLTHPPTNKLPSCLCFVLYKQRASREASRALGHGLFSGELSTAILDTRFQQPSLDGGSSAGSQSPDTVRSHSLRGPSTPFRGSSDSGDLESNEEEGGRTNARQRKSMGQVLECRELSQSPWLHYPHLELVFLFFAFEGAVTSQVSALRSTSSSKLYYAALVTLVRACEAGAVLYPVLMFAMVARTHRVRVRSDALIVFVSNENRVTWMGRKEFFSKLLAGSRKDFSLFAWADKGQWETVQTSDVNARRDADWFRIGFEPLFADFTQAGSWFILYTLMENADANSIRIALLQVPNSTITFAGVLTCRRGNFEVSLMKVFSLTFYNAHQDAPPPCIVLRGWAFFAIVGVLVDNSAVQLGLFCAMHSSTFILLVVFKPFANR 740          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 6.630e-80
Identity = 167/388 (43.04%), Postives = 226/388 (58.25%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPT---ALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVF--TSNESDEGSTGT--SSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            +RWVNLWP  S       R  S+  E    +DG       +   GI  T+ SD+G+ +F+GN+ LF   LL I  +HI++ SA+EAYWL+KERA  E+ +A R  +          + +   P  E+  D  +A+    G +      EH A  S D   G D   E+      +R   L   +++CR  S S WL++PH+EL+FLLFAFEGA+ SQ++ +R      VFY+A A+LV YPVLM+ +  RT RVRV  D LIVF     E + G+ GT   S  SK   GL++D S+FAWA+ G WETV+  DE+  R  D FRIGFEPLF DFT+  SWF +Y L+E   +AC AVLVD+S VQ   FC +HS++F+LLV  +PFAN
Sbjct:   86 LRWVNLWPPDSVG-----RTFSSGGERLFQQDG-------SRACGIEPTSASDIGALVFLGNIGLFTSLLLGIVVIHIVLVSAVEAYWLSKERAMEELTKAQRRGIPIRGLGARRASRVAHSPDAESDPDELAASASNDGAMS----REHAAADSVDV--GVDF--EEDGIPIRSRPKGLRAMLADCRYRSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSYRTHRVRVAPDTLIVFKPVGEEENHGTDGTVPRSFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFAN 453          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 4.570e-77
Identity = 178/456 (39.04%), Postives = 235/456 (51.54%), Query Frame = 1
Query:    4 RWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQ----------RGISWT-AISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTI--------------QSPQLMEHQAVSS-----------------------W-------------DSTGGGDSTNEQQRGR----TNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVFTSNESDE--GSTG---------TSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            RW NLWP  SF+E                   D+ ++G   +           G SW  ++  +GS +F+GN  L  G L+ IF LH+ + S +EAYWLAK+RA+ E  RA R  VS  E+ +       + E        AR + GT               + P L+   A  S                       W             D+  G D ++  + G     T TRA + +  V+ECRE S+SAWLH+PH+ELVFL FA+EGAV SQVSALR      V  AA   LVFYP+LM   V RT  VRVR + LIVFT  E+D+  G  G         ++S  SK  AG  +D SLFAWA+KG WET +  +E  RR   WFRIGFEPLF DFT++G+WF+ +TL+EWA L CI  L+D S +Q   FCA+H+++F+LLV  +PFAN
Sbjct:  795 RWANLWPPASFAEEFI----------------DTSDEGQQRRLXXXXXXXXXXGCSWDGSLGGLGSLVFIGNQGLVFGALVLIFLLHVSLVSGVEAYWLAKKRAKEEAARARRLGVSIGEYFSDTHVDGREHEQAPVPEPDARPSGGTTDISVASSFRRRRLRRDPSLLNAAATGSQRRLEKLPALDAPHRSRKVRDGSWVAEDGEKKEARSDDNLSGTDCSDYDEEGGGGLGTLTRAESRLSPVAECREHSRSAWLHFPHVELVFLFFAYEGAVASQVSALREAGCPPVMIAAGLALVFYPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFAN 1234          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.510e-72
Identity = 151/389 (38.82%), Postives = 209/389 (53.73%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQRGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPTALLG---TWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGSTGTS-----SIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            +RW+NLW      + +AS   + E                           S +G+ +F+GNLAL  G LL IF +H+   S +EA WL K+RAR  +  A R      E    L G         +L D    ARQA     +P  +  +     D   GG       RG    R+   +  V+ CRE S SAWLH+PH+ELVFL FAFEGAV S  SA+R +    +FY A+A +V YP+LM   V RT  VRVR + L++F    +++G+ G +      + S+  +   ++ SLF+WADKGQWETVQ  D    R  DWFRIGFEP+F D+T+ G+WFI+ +L+EWA  A + V+++NS VQ   FC +HS+ F +L+  KPFAN
Sbjct: 1230 LRWINLWWPAEVGQNIASDECAFE------------------------AGASGIGALVFVGNLALVIGILLAIFFMHVAAVSGVEALWLTKKRARENLDAARRRGAPIGELQARLRGGRIICRTNPDLADPSPFARQAPQPSGTPSTLHEEESDMSDEEEGG-------RGLVPMRSENRLSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEIFYTAIAAMVLYPLLMFVTVFRTLLVRVRPNVLLIF-KTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFAN 1586          
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 8.780e-71
Identity = 160/394 (40.61%), Postives = 212/394 (53.81%), Query Frame = 1
Query:    1 IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQ-------RGISWTAISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPRALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAVSSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQRVRVRSDALIVFTSNESDEGS------TGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAVLVDNSAVQCGSFCAIHSMTFILLVACKPFAN 1143
            +RW+NLWP  SF+       +  E +   GED                   G+      D+ S +F+GNL LF   L  IF +HI VAS IEAYWLAK  A   V RA R  V   E    L   W   +   +   + R A               +S D  G  D T+ ++ G   T   + + +++ECRE SQS WLH+PH+EL++LLFAFEGAV +QVSA+R  ++  V   AV  L+F+PVLM   V  T   ++RS   IVF  N  D         T   S  SK   GL++  S+FAW++KG+WE+V   DE+ +R  DWFRIGFEPLF DFT AGSWF +Y LIE    A + V+VDNS +Q   F A ++++F+LLV  KPFAN
Sbjct: 2222 LRWINLWPPASFARSFTPASMYGELD-QEGEDAXXXXXXXXXXXXXXXXXEGVENEESGDLSSGVFVGNLVLFLIILFIIFLIHITVASGIEAYWLAKRGAEKHVARAQRRGVPVRELSARLSNPWAPFDPNSESQRSLRTAK--------------TSGDDEGEADDTDAEE-GMPETVGRSKLSKIAECRERSQSVWLHFPHVELMYLLFAFEGAVAAQVSAIRENATLLVLILAVLALLFFPVLMTFNVMCTFFGKIRSKKHIVFIPNADDAVEAESDLYTSVRSFGSKVRRGLKESYSMFAWSNKGEWESVDTPDEEDKRARDWFRIGFEPLFVDFTGAGSWFAVYALIELVANAVVGVVVDNSVLQLSLFGAFNTVSFLLLVVLKPFAN 2599          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5F3_ECTSI7.990e-25695.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTJ3_9PHAE4.820e-18075.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9C2_9PHAE6.100e-16066.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBY1_9PHAE1.830e-12248.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX1_9PHAE1.680e-11947.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD37_9PHAE2.730e-11949.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L9_ECTSI6.630e-8043.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN93_ECTSI4.570e-7739.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWS4_ECTSI1.510e-7238.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN89_ECTSI8.780e-7140.61Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:27417..30285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score85.1
Seed ortholog evalue7.7e-14
Seed eggNOG ortholog2880.D8LIK9
Model size1149
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Cds size1149
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348772.9684203-CDS-Ecto-sp6_S_contig11:27416..275421682348772.9684203-CDS-Ecto-sp6_S_contig11:27416..27542Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 27417..27542 -
1682348772.9768176-CDS-Ecto-sp6_S_contig11:28010..282841682348772.9768176-CDS-Ecto-sp6_S_contig11:28010..28284Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 28011..28284 -
1682348772.9881516-CDS-Ecto-sp6_S_contig11:28657..287041682348772.9881516-CDS-Ecto-sp6_S_contig11:28657..28704Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 28658..28704 -
1682348772.9982564-CDS-Ecto-sp6_S_contig11:29386..298151682348772.9982564-CDS-Ecto-sp6_S_contig11:29386..29815Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 29387..29815 -
1682348773.006953-CDS-Ecto-sp6_S_contig11:30012..302851682348773.006953-CDS-Ecto-sp6_S_contig11:30012..30285Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 30013..30285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1179.1prot_Ecto-sp6_S_contig11.1179.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 27417..30285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1179.1

>prot_Ecto-sp6_S_contig11.1179.1 ID=prot_Ecto-sp6_S_contig11.1179.1|Name=mRNA_Ecto-sp6_S_contig11.1179.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=383bp
IRWVNLWPSQSFSEGVASRVLSNEPEPTAGEDGDSDEDGDATQRGISWTA
ISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKERARNEVPR
ALRGDVSTSEFPTALLGTWPQQENLDDGWSAARQASGTIQSPQLMEHQAV
SSWDSTGGGDSTNEQQRGRTNTRAGALIGQVSECRELSQSAWLHYPHLEL
VFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVARTQR
VRVRSDALIVFTSNESDEGSTGTSSIYSKTIAGLRKDSSLFAWADKGQWE
TVQMADEDARRNADWFRIGFEPLFADFTQAGSWFIIYTLIEWAVLACIAV
LVDNSAVQCGSFCAIHSMTFILLVACKPFANR*
back to top

mRNA from alignment at Ecto-sp6_S_contig11:27417..30285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1179.1 ID=mRNA_Ecto-sp6_S_contig11.1179.1|Name=mRNA_Ecto-sp6_S_contig11.1179.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2869bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:27417..30285- (Ectocarpus species6 EcLAC_371)
ATAAGATGGGTGAACTTGTGGCCCTCCCAGAGCTTCTCTGAGGGTGTAGC ATCACGGGTTTTATCGAACGAGCCTGAGCCAACCGCCGGAGAAGATGGTG ATTCCGACGAAGATGGTGATGCAACGCAGCGAGGAATCTCCTGGACAGCC ATCAGCGATGTTGGTTCGTTTTTGTTCATGGGGAATCTCGCGCTGTTTGC TGGGTTCCTTCTGACCATCTTTTCCTTGCACATATTGGTGGCGTCGGCGA TTGAGGCGTACTGGCTGGCAAAGGTGAGATCCCGACGGAGTGCATCTTAT TCGCCAACTGGTCTAGAGCGCATGTGTTTCACGCGATAACGAAGATTATG TATTGTGGTGATGAAACGGGATGTCGCGAAAGCAAGAGTTACAACGAAGG GCTGGCGCGGTGTGTACACTGTAGTCGCCAAACCGCATTGCCTTTGTTCG CTTCTGGTGTTCGTCCCTAGGAACGGGCGAGGAATGAGGTTCCAAGAGCG TTGCGTGGGGACGTATCTACCAGCGAGTTTCCCACCGCTTTGTTGGGCAC GTGGCCACAACAGGAGAACTTGGACGACGGCTGGTCAGCGGCGCGCCAGG CATCAGGTACCATCCAGTCACCCCAACTAATGGAACACCAAGCTGTATCT TCTTGGGACAGCACTGGCGGGGGGGATTCAACGAACGAACAACAAAGAGG GCGAACGAACACGCGTGCGGGCGCTTTGATCGGCCAGGTGTCTGAGTGCC GAGAACTATCGCAGTCGGCGTGGCTTCACTACCCGCACCTAGAACTCGTC TTCCTTCTCTTCGCGTTCGAGGGCGCAGTGACCTCGCAGGTGTCAGCGTT GCGAACTACAAGTTCTTCAACAGTTTTCTACGCGGCCGTAGCAACTTTGG TGAGGATGTGGGAGTACGCCGTTAACGATCAACAACGTGTTGCGGTGATT ACGGTAGACGTACGTGTGTGAAGAAAGTTGGTCTGTGACACCCGAGCAAA CAACGCTACGGGATGCTTCGGGATGGCCAGCAACTGGACATACATACCGT TGGATGGCAAAAGGCCGTCACGTAAACATTTCCACAACTGCAATGTGTTC GCGAATATCGATTGTGACGATGGTACACGTCCTACATTTGCTATGGGTCT GTTCGAGGCAATGTTCCCGTACGTTTTGATTGCCCACACACTGCACAGAT ATCAATCGGCAGCGATGTACACGTCTGGACAAGGCTCTCGCCCGGTCGAG GGGGAAAATCACCTACACCGTTTTTTCATAAATGGATGACTGTTCCTCAA TAGGTTCATGTACCTCTGTAGAATTCGCTAGGCTCTCCAACCGCAGCAGC GTCTCTGCTGGGCCCACTTGACTTTCCGACGCCACCTGACGGCTCACAGG CTCCGGTTGAGCGTTCCATAACTCCACCCCCCTCGTGTCTGCTTCCGACA GTCCGTGCCCGCCTTTGGGCTGGGAGTAGTACTCTGTACTCTGTGTCCTG CGTTTTACTCTAGGGTGAAATTCTTCGTGGCGAACGTCCTTGTTTGTTTG CCCTTTGCTTGGCGAACAATCGCGCGAACAGGTTTTCTACCCAGTGCTGA TGGTTGCAATGGTCGCGCGAACTCAAAGGTAAGCGACTCCTTACTCCACG AAGGTGGTTAATTTGCAGTTTGCAGTAGGGCAGCGCTCATGCATGGCCCG TGCCGGTGCTGTGAGAACTACTGGCTTCTGTACTGTTTGTAAATTGTGTA CATGCAATGATCTCCTTCGCATTTGCGGCAGATGCGCAGATTTGCGGCAG TCACCATATTCGCTAACACGCAGCCACGCACTCAAGAGAACCTCTGTGGA AGGCTTGTACTTGTTCTACCGTGGAGTCCTGTTGCGTCTGTGAGCGTCGA CAGCTCCTTCACTTGGTGCCGTGTCAACCAACTGGGCCTTACTTCTGCCG AATAGCTGCCATGTCATTTCTCAGCTTTACTCCCTTCAATGCACGCGGCA GGGTAAGGGTTCGATCAGATGCCCTCATCGTGTTCACCTCCAATGAAAGC GACGAAGGGTCGACCGGCACGTCGAGCATTTATTCTAAAACGATTGCCGG GTTGAGAAAGGACTCCAGCTTATTTGCATGGGCGGATAAAGGGCAGTGGG AGACAGTCCAGATGGCGGACGAAGACGCAAGACGGAATGCTGATTGGTTC CGGATCGGGTTCGAACCGCTGTTTGCAGACTTCACCCAAGCTGGATCGTG GTTCATCATCTACACTTTGATTGAGGTATGTCGTTTTCAGGAGGGGTCTA CATGTACCCTTCGCTAGCTTTCGTTTCGGAAGCCTACTGGTTATCTCCGA ACGCAGCAGGAAAACTTGATTTACGAGGCGGCCAAGCGATCGAACTATCT TGGTTTTTCTGCCGTGTTGCTGCGTGTTCACAACGTCTACACCCCTCCGC ACGAAATTTTACATTGTGGGGCGTTTTACCACCGAACGCTTCACGTGCCG GCTCAAAGCGCCAGTCCGTTTCAAGCGGTATTTTCGCGCCATATTGCCGT ATATTGGTCACTTGTCGAAAGTAATCGGTCCGTAGTAGCCAAGTGGGCTG TGCAAAAATCGTCACATCTGCGATGCACTTGAATGGTATGGGCAATTCAG TCCAGTTGCTTATCTTCCGATCGACTTGTAACGAAGTATCGTCGCATGCT AACTACTGGGTTTCGGTGTTTGCTCTCGTGTCTGCTTGCATAGTGGGCTG TCCTTGCCTGCATTGCCGTGCTGGTGGACAACAGTGCGGTGCAATGCGGA TCGTTCTGCGCCATACATTCGATGACCTTCATCCTTCTTGTGGCTTGCAA GCCATTCGCAAACAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:27417..30285-

>mRNA_Ecto-sp6_S_contig11.1179.1 ID=mRNA_Ecto-sp6_S_contig11.1179.1|Name=mRNA_Ecto-sp6_S_contig11.1179.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:27417..30285- (Ectocarpus species6 EcLAC_371)
ATAAGATGGGTGAACTTGTGGCCCTCCCAGAGCTTCTCTGAGGGTGTAGC
ATCACGGGTTTTATCGAACGAGCCTGAGCCAACCGCCGGAGAAGATGGTG
ATTCCGACGAAGATGGTGATGCAACGCAGCGAGGAATCTCCTGGACAGCC
ATCAGCGATGTTGGTTCGTTTTTGTTCATGGGGAATCTCGCGCTGTTTGC
TGGGTTCCTTCTGACCATCTTTTCCTTGCACATATTGGTGGCGTCGGCGA
TTGAGGCGTACTGGCTGGCAAAGGAACGGGCGAGGAATGAGGTTCCAAGA
GCGTTGCGTGGGGACGTATCTACCAGCGAGTTTCCCACCGCTTTGTTGGG
CACGTGGCCACAACAGGAGAACTTGGACGACGGCTGGTCAGCGGCGCGCC
AGGCATCAGGTACCATCCAGTCACCCCAACTAATGGAACACCAAGCTGTA
TCTTCTTGGGACAGCACTGGCGGGGGGGATTCAACGAACGAACAACAAAG
AGGGCGAACGAACACGCGTGCGGGCGCTTTGATCGGCCAGGTGTCTGAGT
GCCGAGAACTATCGCAGTCGGCGTGGCTTCACTACCCGCACCTAGAACTC
GTCTTCCTTCTCTTCGCGTTCGAGGGCGCAGTGACCTCGCAGGTGTCAGC
GTTGCGAACTACAAGTTCTTCAACAGTTTTCTACGCGGCCGTAGCAACTT
TGGTTTTCTACCCAGTGCTGATGGTTGCAATGGTCGCGCGAACTCAAAGG
GTAAGGGTTCGATCAGATGCCCTCATCGTGTTCACCTCCAATGAAAGCGA
CGAAGGGTCGACCGGCACGTCGAGCATTTATTCTAAAACGATTGCCGGGT
TGAGAAAGGACTCCAGCTTATTTGCATGGGCGGATAAAGGGCAGTGGGAG
ACAGTCCAGATGGCGGACGAAGACGCAAGACGGAATGCTGATTGGTTCCG
GATCGGGTTCGAACCGCTGTTTGCAGACTTCACCCAAGCTGGATCGTGGT
TCATCATCTACACTTTGATTGAGTGGGCTGTCCTTGCCTGCATTGCCGTG
CTGGTGGACAACAGTGCGGTGCAATGCGGATCGTTCTGCGCCATACATTC
GATGACCTTCATCCTTCTTGTGGCTTGCAAGCCATTCGCAAACAGGTGA
back to top