mRNA_Ecto-sp6_S_contig109.1175.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig109.1175.1
Unique NamemRNA_Ecto-sp6_S_contig109.1175.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig109.1175.1 vs. uniprot
Match: D7G5M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M3_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.920e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 MVDEIYAPILAVHSKYAPIKPAGLEDVMGSKDLAEALQSKTVAQHVQERH 150
            MVDEIYAPILAVHSKYAPIKPAGL+DVMGSKDLAE LQSKTVAQHVQERH
Sbjct:   73 MVDEIYAPILAVHSKYAPIKPAGLDDVMGSKDLAEDLQSKTVAQHVQERH 122
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BLAST of mRNA_Ecto-sp6_S_contig109.1175.1 vs. uniprot
Match: D7G125_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G125_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 MVDEIYAPILAVHSKYAPIKPAGLEDVMGSKDLAEALQSKTVAQHVQERH 150
            MVDEIYAPILAVHSKYAPIKPAG++DVMGSKDLAE LQSKTVAQHVQERH
Sbjct:  363 MVDEIYAPILAVHSKYAPIKPAGVDDVMGSKDLAEDLQSKTVAQHVQERH 412
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig109.1175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5M3_ECTSI2.920e-2596.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G125_ECTSI1.600e-2294.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig109contigEcto-sp6_S_contig109:392637..393927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000010.1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.9174545-CDS-Ecto-sp6_S_contig109:392636..3926691682348771.9174545-CDS-Ecto-sp6_S_contig109:392636..392669Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 392637..392669 -
1682348771.927239-CDS-Ecto-sp6_S_contig109:393807..3939271682348771.927239-CDS-Ecto-sp6_S_contig109:393807..393927Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 393808..393927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig109.1175.1prot_Ecto-sp6_S_contig109.1175.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig109 392637..393927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig109.1175.1

>prot_Ecto-sp6_S_contig109.1175.1 ID=prot_Ecto-sp6_S_contig109.1175.1|Name=mRNA_Ecto-sp6_S_contig109.1175.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=51bp
MVDEIYAPILAVHSKYAPIKPAGLEDVMGSKDLAEALQSKTVAQHVQERH
*
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mRNA from alignment at Ecto-sp6_S_contig109:392637..393927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig109.1175.1 ID=mRNA_Ecto-sp6_S_contig109.1175.1|Name=mRNA_Ecto-sp6_S_contig109.1175.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1291bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:392637..393927- (Ectocarpus species6 EcLAC_371)
ATGGTCGACGAGATCTACGCCCCCATCCTCGCTGTACACAGCAAATACGC
TCCGATTAAACCTGCTGGTCTTGAGGACGTCATGGGCTCCAAGGACCTGG
CCGAAGCCCTCCAGTCTAAGGTAAGAGGTCATCCGGATACGTATGCATAC
AACCTGAATAATGGTCTTTGATCCGTAAAAACCGTTGCTGACAAACTCTA
TCGGTTCCGGGAATGAATGGTCGTTCCACGTATGCATAGCGTGAATTCCG
TAGGACATCGACGGGACAACTCGGCGGTATTCCCACGGCTGATGTAGAAA
GATAACGACACCAGCTTTGAAATCAAATACCGTAGGTAGAACTCGTCACT
GGTTTGCGAGACATGTACAAAGTTCAAGTGACCTGGCCGAAGAATCAAAG
GATTTCGTCTAACTCTACTTACGAAGCAGCGATGGCGATGCCTAGGATAT
TGTGGGGCTTGTTCAACGCGAGCCGCCTCCCGCGTTGAACGATAGCTAGC
AACCGTCAATTGCAGGTGCTGTACAATCTAAATGCGAGGCAATATGTCCT
GATATAATAGTAGTGACTACAACCGCGACCCTTTTGTCTCTCAGCCTCGA
GCGAGATGTAGTCTAGGCTACAATGCGCGTCGCTCGTTGTTCGGCTTTAT
TATGTGGACACGACGCTTTTGTTCAGCATCAAACACAGAACAACTCATCC
GAAGCATATTGTGCGGGCACGCGATCCGGCGTGACGGGATATTGTCGTAC
GTGCCTTGTCCCGGTGTGATGGACAGTGTTTCAAAGGATTACTGGTGGCG
GCCCTACAGGACATCAAGAGCTTAACGGTCTCCCATGTCCACAAGGAGGA
TGCGCGGACAGAGGTTCTTCGTCGAACCCATGAGTGGTCGAAACTCCAAT
CTGGGGGCGGGGGCAGCAAGCTCTTCACAGCTGAGTTGAGAGACCACCGT
AGTTGAATTATACACACGGCCCCTTGAACTATCAGCTGTCAAATGATGTC
CAGGAAACGAACCATCTGAGGCATACCCTAACTACAGAACGTGGAACCCA
AGCCGCGACTTTTGTCTTCTTCAATGAACTGCTGCCCTGGACATGTTGAA
GTATTCAGTATATGTGATGGCCACGCGTGATGACACAGCAACCGTATGTC
GTGCGGTATCGCTTTCCTCCCAAGAGCCGCATTTTTCGGTGCAACACCGC
TTCAACACTGCCACTGTTCTCTTGCGTTATCCCGTTGTGTTCACGTGTCT
TTACGCAGACTGTGGCCCAGCATGTTCAAGAGCGTCACTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig109:392637..393927-

>mRNA_Ecto-sp6_S_contig109.1175.1 ID=mRNA_Ecto-sp6_S_contig109.1175.1|Name=mRNA_Ecto-sp6_S_contig109.1175.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:392637..393927- (Ectocarpus species6 EcLAC_371)
ATGGTCGACGAGATCTACGCCCCCATCCTCGCTGTACACAGCAAATACGC
TCCGATTAAACCTGCTGGTCTTGAGGACGTCATGGGCTCCAAGGACCTGG
CCGAAGCCCTCCAGTCTAAGACTGTGGCCCAGCATGTTCAAGAGCGTCAC
TAG
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