mRNA_Ecto-sp6_S_contig109.1172.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig109.1172.1
Unique NamemRNA_Ecto-sp6_S_contig109.1172.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig109.1172.1 vs. uniprot
Match: D7G5N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.530e-36
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 MQDDPEELAKSEVALPLLELAIQQMKVLPDDGDTTDAFSKARSRVNRWAILERGGSPNQVFQKE 192
            MQDDPEELAKSEV LPLLELAIQQMKVLPDDGD+TDAFSK RSRVNRWAILERGGSPNQVFQKE
Sbjct:    1 MQDDPEELAKSEVVLPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQKE 64
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BLAST of mRNA_Ecto-sp6_S_contig109.1172.1 vs. uniprot
Match: D7FVS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS3_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.400e-28
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 MQDDPEELAKSEVALPLLELAIQQMKVLPDDGDTTDAFSKARSRVNRWAILERGGSPNQVFQ 186
            MQDDPE+LA SEVALPLLELAIQQMKVLPDD DTTDA SKARSRVNRWAILERG  P + F+
Sbjct:    1 MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFR 62
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BLAST of mRNA_Ecto-sp6_S_contig109.1172.1 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.690e-9
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   37 VALPLLELAIQQMKVLPDDGDTTDAFSKARSRVNRWAILERGGSPNQVFQKE 192
            VALP++E+AI  MKV+ DD +  D  + A  RV RWA+LE+GGS N VFQKE
Sbjct:  360 VALPMVEVAIGLMKVIIDD-EELDNMAMAIKRVRRWAVLEKGGSSNTVFQKE 410
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BLAST of mRNA_Ecto-sp6_S_contig109.1172.1 vs. uniprot
Match: D7FI40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI40_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 2.520e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   73 MKVLPDDGDTTDAFSKARSRVNRWAILERGGSPNQVFQKE 192
            MKV+ DD +  D  + A  RV RWA+LE+GGS N VFQKE
Sbjct:    1 MKVIIDD-EELDNMAMAIKRVRRWAVLEKGGSSNTVFQKE 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig109.1172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5N5_ECTSI1.530e-3695.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVS3_ECTSI8.400e-2883.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLB4_ECTSI7.690e-957.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI40_ECTSI2.520e-557.50Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig109contigEcto-sp6_S_contig109:158619..159971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size195
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.6686127-CDS-Ecto-sp6_S_contig109:158618..1586541682348771.6686127-CDS-Ecto-sp6_S_contig109:158618..158654Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 158619..158654 +
1682348771.6807063-CDS-Ecto-sp6_S_contig109:159812..1599711682348771.6807063-CDS-Ecto-sp6_S_contig109:159812..159971Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig109 159813..159971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig109.1172.1prot_Ecto-sp6_S_contig109.1172.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig109 158619..159971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig109.1172.1

>prot_Ecto-sp6_S_contig109.1172.1 ID=prot_Ecto-sp6_S_contig109.1172.1|Name=mRNA_Ecto-sp6_S_contig109.1172.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=65bp
MQDDPEELAKSEVALPLLELAIQQMKVLPDDGDTTDAFSKARSRVNRWAI
LERGGSPNQVFQKE*
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mRNA from alignment at Ecto-sp6_S_contig109:158619..159971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig109.1172.1 ID=mRNA_Ecto-sp6_S_contig109.1172.1|Name=mRNA_Ecto-sp6_S_contig109.1172.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1353bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:158619..159971+ (Ectocarpus species6 EcLAC_371)
ATGCAGGATGATCCCGAGGAGCTCGCAAAAAGCGAGGTTAGTATGTGGGT
CGTGTGTCTTTCGTTGTGTTGAGGTTGACGACACACACTGCAATTTGCAC
TTTAGCCGCTATAGCGGCAGCAGTGTAAGTGCCGGGATGATACCGACATT
TCATGCCGTTCGTATATGTCCTTACTGCCTCCACCTACGATGTTTTGGAG
TTTGGTGCCAATTGTTTCCTGTTGCAAAATCGAACGGTTTATGGTTCCCG
GACGCGAACGAGTAGTCGTATACGCAGGAAGGGGGTGCAATCACGAACGG
ATGGGCTGCCATCATCATGTACATCATCCATGTGGTGGTCAACTACACAA
GAATGCCTCCATGAAACTACCCTTCGTCTTGTTTGTTTCCGCACACAGGA
GATGATTGTGTGCATCGACTCCATGATCGAGCTCCCTCTGGACGCCCATA
GGTCGGGAGGCTGGGAATCTCTGGGCCCCTTTGACATCTGGGGGGGGAAT
GCGCCTATGTTCATCGAGGATGTGAGAAAAATGAATGTGGCTGGCGTGGT
CGCGCCCAATAATAATACGCCATTGACGTCACCGTTTTATTCTTTTTTAT
ACATACTCTGTCATGATTAAATATTATGCAGAACAAAACTGTAAAGCGTG
ATAATCACGAGTAGCAAGGAGTGTGGAGGTAGGTAGGTAGGTAAAGAGTT
TGATATTGTACATTGTGCTCCATGCGTTTCGGAAGCAAACTGCTGCTGTA
GCCAAGGATCAAATTTTCCGGTAGGTCGTCGGTCGATTTTTCTTCACAGT
TCCAAGTCGAAGCGAGAGTGTTTGCCAGAATGTTGCCGGCCATGATTCCG
AATTGTATAACGCCGTTACGTTCTCGTTTGTAAGTCGCTTTGAGGATGGG
GGATGTGGGTGTTGGTGGAAGGCACACCACCCGGCCGTGTGGTGTGTACA
GCAAGCTCTCTGCACAAAAAACCAATTATTAAAGTAGCTGCGGACAGGCG
CGAACATTGAGAGTCGCGAGCCCAAATATTCTTGAGAGCTAGCTCTGCGA
GAAACGCCCCGCGGCTGTGTATGTCGTCGAGTACTAAAGATTCACGGGGT
AACAACTACATACATATCTTGATATTTTACCAGCCCTCGTTACGCCTCTA
ATTCGTGCCTACGTCGGCTTATTTCTGTTTGTACTGAACACCAGGTTGCC
TTGCCCCTTCTGGAGCTTGCAATCCAACAAATGAAAGTGCTGCCGGATGA
CGGCGACACCACGGACGCTTTTTCCAAGGCCAGGTCGCGGGTAAACCGCT
GGGCCATTTTGGAGAGGGGGGGGTCTCCCAACCAGGTTTTTCAGAAGGAG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig109:158619..159971+

>mRNA_Ecto-sp6_S_contig109.1172.1 ID=mRNA_Ecto-sp6_S_contig109.1172.1|Name=mRNA_Ecto-sp6_S_contig109.1172.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp6_S_contig109:158619..159971+ (Ectocarpus species6 EcLAC_371)
ATGCAGGATGATCCCGAGGAGCTCGCAAAAAGCGAGGTTGCCTTGCCCCT
TCTGGAGCTTGCAATCCAACAAATGAAAGTGCTGCCGGATGACGGCGACA
CCACGGACGCTTTTTCCAAGGCCAGGTCGCGGGTAAACCGCTGGGCCATT
TTGGAGAGGGGGGGGTCTCCCAACCAGGTTTTTCAGAAGGAGTGA
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