mRNA_Ecto-sp6_S_contig108.1170.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 910 bits (2353), Expect = 0.000e+0 Identity = 454/461 (98.48%), Postives = 456/461 (98.92%), Query Frame = 1
Query: 1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGG-AGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFP-SAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGG 1377
MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISR+GG AGERC+KLFIGKQPGTTAGVEGAFTPDGVMYANVFQI AESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANF AQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGG
Sbjct: 1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGG 461
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE) HSP 1 Score: 287 bits (734), Expect = 7.830e-90 Identity = 157/275 (57.09%), Postives = 191/275 (69.45%), Query Frame = 1
Query: 43 DLARFVPLVPPVTCPL----------AGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAG-VEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 831
D +P+ P +T P+ SRSI DHNF +K+ Y+AFEAL Q P+ F S+ GR+ EI IDGCAKI TD+ QF IAR ER VD D +++LK+S+ISKM F R+R+VLEAAP FG NR+SN+M+RTARG+MA GSP+ GD GEL++ALGD AITDLS K +DL+NIY LCF KGIS + K+ LVQC Q+LW S G GERC+KLFIGK G+TAG VEG FT D VM A+VFQITAES ADAVD+ H LV
Sbjct: 31 DAQNLLPVYPSLTLPIDSLLPRLPRVPSSRSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADLHNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLV 304
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE) HSP 1 Score: 259 bits (662), Expect = 1.110e-79 Identity = 140/240 (58.33%), Postives = 163/240 (67.92%), Query Frame = 1
Query: 103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAH 822
SI DH F +KE Y+AFEAL QHP+ F S+ GR+PEI IDGCAKI TD+ QF IAR ER VD + +++LK+SMISKMVF +R+VLEAAP FG GSP+ GD GEL++ALGD AITDLS KSF DLKNIY LCF KGIS + K+ L QC Q+LW + G GERC KLFIGK G+TAGVEG FT DGVM A+VFQITAES ADAVD+ H
Sbjct: 14 SIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFG----------------PTPVGSPEDGDAGELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELAD-GEGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVH 236
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.400e-78 Identity = 165/370 (44.59%), Postives = 213/370 (57.57%), Query Frame = 1
Query: 340 MISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAG---------------RKGISRFRNKDALVQCFQELWISRNGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLA-PIAERLH-----PWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPS-SATDV----VVDNIYAVYADAN-FPSAQPHVNFGALLQRS-----------ARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADD 1335
MISKMVF +R+R+V+EAAPT NRISN+M RTARGK+A G+P+ GD G+L++ALGD AITDLS+K+ DL+NIY LC+ R + RF + L+QC W S G ERC+++FIGK G T GVEG F DGV+YA VFQ+ ESAAD VD+ +H T +P P+ + H P G LPR+A+ V L LQH+GA A+EFPD + V+ P FPSP + SA+D V +YA YA P QPH++F ALLQR+ A A D SS +KR LAE+ L SLH+QG +AMTLFEVV ++ W A +A +D
Sbjct: 1 MISKMVFDRRLRWVVEAAPTVSPHNRISNVMHRTARGKLAPEGAPERGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESAGIGDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISH-----RQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGVDWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLMYMLWFQAAAHAAPED 365
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE) HSP 1 Score: 246 bits (628), Expect = 2.660e-75 Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 1
Query: 46 LARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGV 756
+A L P + PL SI DHNFI +++ Y+AFE LTQHP++F SY +G PE+++IDGCAK+ +D+ + F AR ER VD D HQLLK+SMISKMVF R+R+V EA PTFG NRISN+M RTARGK GS +TGD GEL++AL + DL+ K+ DLKNIY LCF G +GIS + K+ + CFQ+LW G +RC+K+FI + G TAGVEG FTPDGV
Sbjct: 1 MATTAVLSPAASVPL----SIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSAETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGV 234
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 236 bits (602), Expect = 4.800e-67 Identity = 155/439 (35.31%), Postives = 212/439 (48.29%), Query Frame = 1
Query: 97 SRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTE--SFPSPPPSSAT---DVVVDNIYAVYADANFPSAQPHVNFGALLQRSA----RSATAE-VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKAD----DGGAIPGLVPPD 1368
++ I DHNFI +++ Y+AFE LTQHP++F SY +G PE+++IDGCAK+ +D+ + F AR ER VD D HQLLK+SMISKM + + CFQ+LW G +RC+K+FI + G TAGVEG FTPDGV+ +++ Q+ + + PS+++TDIPCM+AP AE+ P LL+N G LPR+A G VSLP LQH+GA +++PD H V+ P +F S SS D + N+Y +A A QPH++F ALL+ + R+ + D SS KR LAE L LHQQGCYA+ LFEVV ++ W A A GG G PP+
Sbjct: 4 AKLIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKM----------------------------------------------------------------------------------------EDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATALSGPVQPHIDFSALLKHAGDVVERNRQVQGTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVADPHVHLLQGGRESGGDPPE 354
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 209 bits (531), Expect = 2.790e-57 Identity = 121/246 (49.19%), Postives = 144/246 (58.54%), Query Frame = 1
Query: 667 GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFP--------SPPPSSATDVVVDNIYAVYADANFPSAQPHVNFGALLQRSA--RSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEG 1374
G GERC+KLF+GK GTTAGVEG FT DGV FQ+T ESAAD VD+ AH LV P L+ITDIPC + PIAERL P LL++ G LPRDA+G V L LQH+GAHA+EFPDEH VK P FP SP P QPHV+F +LL+R+A + V D SS R LAE+ L LH++G YAMTL+EVV ++ W A + G PG V EG
Sbjct: 5 GEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPE--GEAPGAVAGAEG 248
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE) HSP 1 Score: 193 bits (491), Expect = 5.390e-56 Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 1
Query: 103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNI 567
SI DHNF +K+ Y+AFEAL QHP+ F S+ GR+PEI IDGCAKI TD+ QF AR ER VD D +++LK+SMISKMVF R+R+VLEAAP G NR+SN+M RTARG+MA GSP+ GD GEL++ALGD AITDLS KS +DLKNI
Sbjct: 14 SIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKSVSDLKNI 168
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE) HSP 1 Score: 178 bits (451), Expect = 9.670e-50 Identity = 91/167 (54.49%), Postives = 116/167 (69.46%), Query Frame = 1
Query: 334 ISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 831
+SMISKMVF R+R+V EA PTFG NRISN+M RTARGK GSP+TGD GEL++AL + DL+ K+ DLKNIY LCF G +GIS + K+ + CFQ+LW G +RC+K+FI + G TAGVEG FTPDGV+ +++ Q+T+ES AD VD H V
Sbjct: 1 MSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSPETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHLAV 167
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE) HSP 1 Score: 171 bits (434), Expect = 5.050e-47 Identity = 96/167 (57.49%), Postives = 113/167 (67.66%), Query Frame = 1
Query: 334 ISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 831
+SMI KM+F R+R+VLEAAPTFG NR+SN+M RTARG+MA GSP+ GD GEL++ALGD A+TDLS KS + LVQC Q+LW S G ERC+KLFIGK G+TAGVEG FT DGVM A+VFQITAES ADAVD+ H LV
Sbjct: 1 MSMIYKMIFNARLRWVLEAAPTFGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAVTDLSDKS------------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLV 143 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig108.1170.1 >prot_Ecto-sp6_S_contig108.1170.1 ID=prot_Ecto-sp6_S_contig108.1170.1|Name=mRNA_Ecto-sp6_S_contig108.1170.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=479bp MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYback to top mRNA from alignment at Ecto-sp6_S_contig108:597473..599939- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig108.1170.1 ID=mRNA_Ecto-sp6_S_contig108.1170.1|Name=mRNA_Ecto-sp6_S_contig108.1170.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2467bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:597473..599939- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:597473..599939- >mRNA_Ecto-sp6_S_contig108.1170.1 ID=mRNA_Ecto-sp6_S_contig108.1170.1|Name=mRNA_Ecto-sp6_S_contig108.1170.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1437bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:597473..599939- (Ectocarpus species6 EcLAC_371)back to top |