mRNA_Ecto-sp6_S_contig108.1170.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1170.1
Unique NamemRNA_Ecto-sp6_S_contig108.1170.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI)

HSP 1 Score: 910 bits (2353), Expect = 0.000e+0
Identity = 454/461 (98.48%), Postives = 456/461 (98.92%), Query Frame = 1
Query:    1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGG-AGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFP-SAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGG 1377
            MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISR+GG AGERC+KLFIGKQPGTTAGVEGAFTPDGVMYANVFQI AESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANF   AQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGG
Sbjct:    1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGG 461          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 7.830e-90
Identity = 157/275 (57.09%), Postives = 191/275 (69.45%), Query Frame = 1
Query:   43 DLARFVPLVPPVTCPL----------AGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAG-VEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 831
            D    +P+ P +T P+            SRSI DHNF   +K+ Y+AFEAL Q P+ F S+  GR+ EI  IDGCAKI TD+    QF IAR ER VD D  +++LK+S+ISKM F  R+R+VLEAAP FG  NR+SN+M+RTARG+MA  GSP+ GD GEL++ALGD AITDLS K  +DL+NIY LCF   KGIS +  K+ LVQC Q+LW S    G GERC+KLFIGK  G+TAG VEG FT D VM A+VFQITAES ADAVD+  H LV
Sbjct:   31 DAQNLLPVYPSLTLPIDSLLPRLPRVPSSRSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADLHNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLV 304          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.110e-79
Identity = 140/240 (58.33%), Postives = 163/240 (67.92%), Query Frame = 1
Query:  103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAH 822
            SI DH F   +KE Y+AFEAL QHP+ F S+  GR+PEI  IDGCAKI TD+    QF IAR ER VD +  +++LK+SMISKMVF   +R+VLEAAP FG                    GSP+ GD GEL++ALGD AITDLS KSF DLKNIY LCF   KGIS +  K+ L QC Q+LW   + G GERC KLFIGK  G+TAGVEG FT DGVM A+VFQITAES ADAVD+  H
Sbjct:   14 SIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFG----------------PTPVGSPEDGDAGELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELAD-GEGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVH 236          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.400e-78
Identity = 165/370 (44.59%), Postives = 213/370 (57.57%), Query Frame = 1
Query:  340 MISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAG---------------RKGISRFRNKDALVQCFQELWISRNGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLA-PIAERLH-----PWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPS-SATDV----VVDNIYAVYADAN-FPSAQPHVNFGALLQRS-----------ARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADD 1335
            MISKMVF +R+R+V+EAAPT    NRISN+M RTARGK+A  G+P+ GD G+L++ALGD AITDLS+K+  DL+NIY LC+                 R  + RF   + L+QC    W S   G  ERC+++FIGK  G T GVEG F  DGV+YA VFQ+  ESAAD VD+ +H         T +P     P+ +  H     P      G LPR+A+  V L  LQH+GA A+EFPD + V+ P   FPSP  + SA+D      V  +YA YA     P  QPH++F ALLQR+           A    A   D SS +KR   LAE+ L SLH+QG +AMTLFEVV ++  W   A +A  +D
Sbjct:    1 MISKMVFDRRLRWVVEAAPTVSPHNRISNVMHRTARGKLAPEGAPERGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESAGIGDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISH-----RQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGVDWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLMYMLWFQAAAHAAPED 365          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 2.660e-75
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 1
Query:   46 LARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGV 756
            +A    L P  + PL    SI DHNFI  +++ Y+AFE LTQHP++F SY +G  PE+++IDGCAK+ +D+   + F  AR ER VD D  HQLLK+SMISKMVF  R+R+V EA PTFG  NRISN+M RTARGK    GS +TGD GEL++AL    + DL+ K+  DLKNIY LCF G +GIS +  K+  + CFQ+LW    G    +RC+K+FI +  G TAGVEG FTPDGV
Sbjct:    1 MATTAVLSPAASVPL----SIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSAETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGV 234          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 4.800e-67
Identity = 155/439 (35.31%), Postives = 212/439 (48.29%), Query Frame = 1
Query:   97 SRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTE--SFPSPPPSSAT---DVVVDNIYAVYADANFPSAQPHVNFGALLQRSA----RSATAE-VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKAD----DGGAIPGLVPPD 1368
            ++ I DHNFI  +++ Y+AFE LTQHP++F SY +G  PE+++IDGCAK+ +D+   + F  AR ER VD D  HQLLK+SMISKM                                                                                        +  + CFQ+LW    G    +RC+K+FI +  G TAGVEG FTPDGV+ +++ Q+           +   +  PS+++TDIPCM+AP AE+  P LL+N G LPR+A G VSLP LQH+GA  +++PD H V+ P    +F S   SS     D +  N+Y  +A A     QPH++F ALL+ +     R+   +   D SS  KR   LAE  L  LHQQGCYA+ LFEVV  ++ W   A  A        GG   G  PP+
Sbjct:    4 AKLIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKM----------------------------------------------------------------------------------------EDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATALSGPVQPHIDFSALLKHAGDVVERNRQVQGTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVADPHVHLLQGGRESGGDPPE 354          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.790e-57
Identity = 121/246 (49.19%), Postives = 144/246 (58.54%), Query Frame = 1
Query:  667 GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFP--------SPPPSSATDVVVDNIYAVYADANFPSAQPHVNFGALLQRSA--RSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEG 1374
            G GERC+KLF+GK  GTTAGVEG FT DGV     FQ+T ESAAD VD+ AH LV P L+ITDIPC + PIAERL P LL++ G LPRDA+G V L  LQH+GAHA+EFPDEH VK P   FP        SP                      P  QPHV+F +LL+R+A  +     V D SS   R   LAE+ L  LH++G YAMTL+EVV ++  W      A  +  G  PG V   EG
Sbjct:    5 GEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPE--GEAPGAVAGAEG 248          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.390e-56
Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 1
Query:  103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNI 567
            SI DHNF   +K+ Y+AFEAL QHP+ F S+  GR+PEI  IDGCAKI TD+    QF  AR ER VD D  +++LK+SMISKMVF  R+R+VLEAAP  G  NR+SN+M RTARG+MA  GSP+ GD GEL++ALGD AITDLS KS +DLKNI
Sbjct:   14 SIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKSVSDLKNI 168          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 9.670e-50
Identity = 91/167 (54.49%), Postives = 116/167 (69.46%), Query Frame = 1
Query:  334 ISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 831
            +SMISKMVF  R+R+V EA PTFG  NRISN+M RTARGK    GSP+TGD GEL++AL    + DL+ K+  DLKNIY LCF G +GIS +  K+  + CFQ+LW    G    +RC+K+FI +  G TAGVEG FTPDGV+ +++ Q+T+ES AD VD   H  V
Sbjct:    1 MSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSPETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHLAV 167          
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 5.050e-47
Identity = 96/167 (57.49%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  334 ISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRNG-GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 831
            +SMI KM+F  R+R+VLEAAPTFG  NR+SN+M RTARG+MA  GSP+ GD GEL++ALGD A+TDLS KS                        + LVQC Q+LW S    G  ERC+KLFIGK  G+TAGVEG FT DGVM A+VFQITAES ADAVD+  H LV
Sbjct:    1 MSMIYKMIFNARLRWVLEAAPTFGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAVTDLSDKS------------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLV 143          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LKH0_ECTSI0.000e+098.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB28_9PHAE7.830e-9057.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL5_9PHAE1.110e-7958.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN3_9PHAE1.400e-7844.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB33_9PHAE2.660e-7553.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W4_9PHAE4.800e-6735.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3W5_9PHAE2.790e-5749.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTI3_9PHAE5.390e-5662.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY55_9PHAE9.670e-5054.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL59_9PHAE5.050e-4757.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:597473..599939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1493
Hectar predicted targeting categoryother localisation
Exons3
Cds size1437
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.5869162-UTR-Ecto-sp6_S_contig108:597472..5975281682348771.5869162-UTR-Ecto-sp6_S_contig108:597472..597528Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 597473..597528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348771.5944824-CDS-Ecto-sp6_S_contig108:597528..5981371682348771.5944824-CDS-Ecto-sp6_S_contig108:597528..598137Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 597529..598137 -
1682348771.6017253-CDS-Ecto-sp6_S_contig108:598953..5991761682348771.6017253-CDS-Ecto-sp6_S_contig108:598953..599176Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 598954..599176 -
1682348771.6093118-CDS-Ecto-sp6_S_contig108:599334..5999391682348771.6093118-CDS-Ecto-sp6_S_contig108:599334..599939Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 599335..599939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1170.1prot_Ecto-sp6_S_contig108.1170.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 597529..599939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1170.1

>prot_Ecto-sp6_S_contig108.1170.1 ID=prot_Ecto-sp6_S_contig108.1170.1|Name=mRNA_Ecto-sp6_S_contig108.1170.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=479bp
MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYY
AFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERH
VDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARG
KMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGI
SRFRNKDALVQCFQELWISRNGGAGERCAKLFIGKQPGTTAGVEGAFTPD
GVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPW
LLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPS
SATDVVVDNIYAVYADANFPSAQPHVNFGALLQRSARSATAEVGDTSSLS
KRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIP
GLVPPDEGGNERYFFRPRDGRLIRARDG*
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mRNA from alignment at Ecto-sp6_S_contig108:597473..599939-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1170.1 ID=mRNA_Ecto-sp6_S_contig108.1170.1|Name=mRNA_Ecto-sp6_S_contig108.1170.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2467bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:597473..599939- (Ectocarpus species6 EcLAC_371)
ATGTCTGGAAGCGCCTTGTTTTTCAAGTGTGGTTCAGACGTTGACCTTGC CCGCTTTGTTCCCCTCGTGCCTCCTGTTACATGTCCACTTGCTGGTTCTC GCAGCATCGCTGACCACAATTTTATCGAGACCCTCAAGGAATGCTACTAT GCATTCGAAGCCCTGACACAACACCCGTACGAGTTCAAGAGCTACGAGTG GGGACGCTTTCCGGAGATCGTGACAATCGACGGGTGCGCGAAAATCAACA CGGACAACACAGACACATCCCAGTTCCAGATCGCTCGGACGGAAAGGCAC GTGGACACTGATCACCAGCACCAGCTGCTGAAGATCTCGATGATATCGAA GATGGTGTTCCCCAAGCGTGTCCGCTTCGTGCTGGAGGCTGCGCCAACAT TCGGATTTTCAAACCGTATTTCGAACCTCATGTTCCGTACGGCACGGGGC AAGATGGCGGATCCAGGATCTCCGCAGACCGGAGACTTGGGGGAGCTTGT GAAAGCACTTGGTGACGACGCCATCACCGACCTCTCAAGCAAGTCCTTCG CTGACCTCAAGAACATCTACACACTCTGCTTCGCCGGTCGGAAGGGTATT AGCAGGTCCGTGCCGGTGTAGGCAATGTCCAAACCAATCATGCGACATGT GTGGAGGCGAACCGTTGTGCGTTTGTGGCCACTACGCTACGGTGACATGA CTACTTGAATGCTACGCTCTTTGACTTCCATGCTCGCTTCCATGCTTGGA TATCTCGATCTAGGTTCAGGAACAAGGATGCGCTGGTCCAGTGCTTCCAA GAGCTCTGGATTTCCAGAAATGGGGGTGCGGGGGAGCGATGCGCGAAACT GTTTATTGGCAAACAACCGGGGACGACGGCAGGAGTGGAAGGCGCCTTTA CTCCTGACGGAGTAATGTACGCTAACGTCTTCCAGATCACGGCGGAGAGC GCTGCGGACGCGGTAGATGTCTCAGCGCACTTCTTGGTGAGCTGCTGGAA GTGAGAGACCGGATAGAGAAAGTACGCTGATGCGAAATCAGTAGCTTCGC GTCTGCTACATACACCATTATTTCCTCTCCGTCACGTCCCCTTTCCCTAT CCTAACCCGGACGCACCCCAGAGCTGAGTCCTCCGTGGGGCATATCCTGT GTTGCTGTATCGTTCTGTTTTTCTTAAATGTTCGGATTTCATCTACTTTT TCTTACCGTGACGTTCAGCCTTTACGCTCGCGACCATTGGTCATTGAGGA GCGTTCATCCATGTCCGCTAACGTCACAGCACCCAGTAAATAATTGTGCT CGTGTACAGGGGGTGGGTTTCTCAGGATGACCACGACGGGCTATGCCCCC GTCCCCAACCCGCCCACGACATGAGCTCGAGGGTGCGAAAGAGGTGGCGA CTTGAGCGAGTCGCCGCATTCTTCATGTGTCCGACATGTCGCCTGTTTCA ACGTAGGTTGTAGGTGGTGGTTTTGTAGGTGGTGGTTGACACCACTTGTC TGCTCAAACGTAGACCTTGTTGCCCCATCTCGCAGTGATTCCACAAACCC TATCGACAATAACTTCTCAACTTGACTCACCGACAGCATCGTCGCCATGA TCAGCCTCACCTAGAGTATATCCGGGACCATGTTGCAGAACCGCCGGGGG AGAGGATCTTCGCCCCCTAGGACGGCGTGAAGCATGTTTGCCGGCATGCG TGGAAATGTTGGAAGTACGGAAACTCAGGTGCATGCGTTGTTCTGCAACA ATGTGCCTCAACAACGTGCTATTCCTACGTTCCGTCGTCGCTGACTGCCA AGGTACCACCAAGCCTGATGATCACAGATATTCCATGCATGCTGGCGCCG ATCGCGGAAAGACTACACCCCTGGCTACTGGAAAATGAAGGCCGACTGCC TCGGGATGCCGACGGCGTTGTGTCCTTGCCGGCACTGCAGCACCTCGGTG CCCATGCGCACGAGTTTCCCGATGAGCACAGCGTGAAGTTCCCAACGGAG TCGTTCCCATCTCCTCCTCCATCATCGGCAACGGACGTGGTTGTTGACAA CATCTACGCGGTCTACGCCGACGCGAATTTTCCTTCCGCCCAACCGCATG TCAACTTCGGCGCCCTCCTTCAACGTTCAGCGAGGAGTGCCACTGCTGAG GTTGGTGACACTTCGTCTTTATCCAAGCGCTTCTGCACCCTGGCCGAGAA CCAGCTCATCTCTCTTCACCAGCAAGGGTGCTACGCCATGACTCTCTTCG AGGTTGTGGCTGTGTTCTCAGCTTGGCTTCATCGTGCAGTCAACGCGAAG GCGGACGACGGAGGGGCGATCCCAGGCCTCGTCCCACCGGATGAGGGGGG GAACGAACGATACTTCTTCAGACCACGAGATGGACGACTCATCAGAGCGC GCGATGGATGACTTGTCGCTGTCCGAGCTCTGCTCAATCTCCCAATTCTT CGAGAAAGTTCTCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:597473..599939-

>mRNA_Ecto-sp6_S_contig108.1170.1 ID=mRNA_Ecto-sp6_S_contig108.1170.1|Name=mRNA_Ecto-sp6_S_contig108.1170.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1437bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:597473..599939- (Ectocarpus species6 EcLAC_371)
ATGTCTGGAAGCGCCTTGTTTTTCAAGTGTGGTTCAGACGTTGACCTTGC
CCGCTTTGTTCCCCTCGTGCCTCCTGTTACATGTCCACTTGCTGGTTCTC
GCAGCATCGCTGACCACAATTTTATCGAGACCCTCAAGGAATGCTACTAT
GCATTCGAAGCCCTGACACAACACCCGTACGAGTTCAAGAGCTACGAGTG
GGGACGCTTTCCGGAGATCGTGACAATCGACGGGTGCGCGAAAATCAACA
CGGACAACACAGACACATCCCAGTTCCAGATCGCTCGGACGGAAAGGCAC
GTGGACACTGATCACCAGCACCAGCTGCTGAAGATCTCGATGATATCGAA
GATGGTGTTCCCCAAGCGTGTCCGCTTCGTGCTGGAGGCTGCGCCAACAT
TCGGATTTTCAAACCGTATTTCGAACCTCATGTTCCGTACGGCACGGGGC
AAGATGGCGGATCCAGGATCTCCGCAGACCGGAGACTTGGGGGAGCTTGT
GAAAGCACTTGGTGACGACGCCATCACCGACCTCTCAAGCAAGTCCTTCG
CTGACCTCAAGAACATCTACACACTCTGCTTCGCCGGTCGGAAGGGTATT
AGCAGGTTCAGGAACAAGGATGCGCTGGTCCAGTGCTTCCAAGAGCTCTG
GATTTCCAGAAATGGGGGTGCGGGGGAGCGATGCGCGAAACTGTTTATTG
GCAAACAACCGGGGACGACGGCAGGAGTGGAAGGCGCCTTTACTCCTGAC
GGAGTAATGTACGCTAACGTCTTCCAGATCACGGCGGAGAGCGCTGCGGA
CGCGGTAGATGTCTCAGCGCACTTCTTGGTACCACCAAGCCTGATGATCA
CAGATATTCCATGCATGCTGGCGCCGATCGCGGAAAGACTACACCCCTGG
CTACTGGAAAATGAAGGCCGACTGCCTCGGGATGCCGACGGCGTTGTGTC
CTTGCCGGCACTGCAGCACCTCGGTGCCCATGCGCACGAGTTTCCCGATG
AGCACAGCGTGAAGTTCCCAACGGAGTCGTTCCCATCTCCTCCTCCATCA
TCGGCAACGGACGTGGTTGTTGACAACATCTACGCGGTCTACGCCGACGC
GAATTTTCCTTCCGCCCAACCGCATGTCAACTTCGGCGCCCTCCTTCAAC
GTTCAGCGAGGAGTGCCACTGCTGAGGTTGGTGACACTTCGTCTTTATCC
AAGCGCTTCTGCACCCTGGCCGAGAACCAGCTCATCTCTCTTCACCAGCA
AGGGTGCTACGCCATGACTCTCTTCGAGGTTGTGGCTGTGTTCTCAGCTT
GGCTTCATCGTGCAGTCAACGCGAAGGCGGACGACGGAGGGGCGATCCCA
GGCCTCGTCCCACCGGATGAGGGGGGGAACGAACGATACTTCTTCAGACC
ACGAGATGGACGACTCATCAGAGCGCGCGATGGATGA
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