mRNA_Ecto-sp6_S_contig108.1165.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1165.1
Unique NamemRNA_Ecto-sp6_S_contig108.1165.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:519139..520020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348765.8248572-CDS-Ecto-sp6_S_contig108:519138..5193411682348765.8248572-CDS-Ecto-sp6_S_contig108:519138..519341Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 519139..519341 -
1682348765.8343685-CDS-Ecto-sp6_S_contig108:519959..5200201682348765.8343685-CDS-Ecto-sp6_S_contig108:519959..520020Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 519960..520020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1165.1prot_Ecto-sp6_S_contig108.1165.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 519139..520020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1165.1

>prot_Ecto-sp6_S_contig108.1165.1 ID=prot_Ecto-sp6_S_contig108.1165.1|Name=mRNA_Ecto-sp6_S_contig108.1165.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
GGGRGRRRRRRRRLRERQEEEQEQEGRQGEEGQQQVSARDGRQETAEAGE
GEEAQERDLDRRRRRLRIERSRRRHRRRRCVVHPRLPC
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mRNA from alignment at Ecto-sp6_S_contig108:519139..520020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1165.1 ID=mRNA_Ecto-sp6_S_contig108.1165.1|Name=mRNA_Ecto-sp6_S_contig108.1165.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=882bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:519139..520020- (Ectocarpus species6 EcLAC_371)
GGAGGAGGACGAGGGCGACGACGACGACGACGACGAAGACTTCGTGAGCG
GCAAGAAGAAGGTGCGGGGTAATCCTTATTATTGTTGTTGTTGTTGTTGT
TATTGTTATTGTTGTTGTTTGTTGTTGTTGTTAAATCGTTGTTGTTGTCG
TCGTCGTCGTCGTTGTTGTCGTCGTCGTCGTCGTTGTTGTCGTCGTTGTC
ATCGGCTTGCTGTCCTCCACGACAAGGCGAACAACAAAAGGCAAGCCTAC
AAGGTACGACGCCTGCTTATCATGGCGCAAAACGACGAGAACAAGAGTCG
TAACGGTCAACCAAGACTTAAGCTCATGACCCGAAACATAACCTAAAAAA
AAAACTCACTAACCTATGTAGTCAATTTATCGCGTAAGTTTCACGCCAGT
AGCCTTCGCGGGCTTGGTTTTTCTATGAAGTTAACATGTTGAAGAAAGCA
TACAATCAGGGAACTTGGGTTAGGGTTAGGGTTAAGGAATACGGTCTGCG
TCCCCCCTCCCTGTTATATTTACTCAGAAAACTCGTTTCTCTCGCGAAGG
CGGTCCTTTGACGCAGGGCGTTCAAGACGACGACGAAATGTTGTGAAAAA
CGATATTTAGCACGCACGGAATCGCCCCCCTCGCGCGGCCACCGCTATGT
TGTTGCTGCTCACATCGCGGACCAATCAGAGCAAGAGCAAGAAGGACGGC
AAGGGGAAGAAGGGCAACAGCAAGTCTCCGCGAGAGACGGCCGGCAAGAA
ACAGCAGAAGCCGGCGAAGGAGAAGAAGCGCAAGAGAGAGATCTGGATAG
ACGACGACGAAGACTTCGAATAGAGAGAAGCCGCCGCCGCCACCGCCGCC
GCCGTTGTGTTGTACATCCCCGGTTACCGTGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:519139..520020-

>mRNA_Ecto-sp6_S_contig108.1165.1 ID=mRNA_Ecto-sp6_S_contig108.1165.1|Name=mRNA_Ecto-sp6_S_contig108.1165.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:519139..520020- (Ectocarpus species6 EcLAC_371)
GGAGGAGGACGAGGGCGACGACGACGACGACGACGAAGACTTCGTGAGCG
GCAAGAAGAAGAGCAAGAGCAAGAAGGACGGCAAGGGGAAGAAGGGCAAC
AGCAAGTCTCCGCGAGAGACGGCCGGCAAGAAACAGCAGAAGCCGGCGAA
GGAGAAGAAGCGCAAGAGAGAGATCTGGATAGACGACGACGAAGACTTCG
AATAGAGAGAAGCCGCCGCCGCCACCGCCGCCGCCGTTGTGTTGTACATC
CCCGGTTACCGTGC
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