mRNA_Ecto-sp6_S_contig108.1138.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig108.1138.1 vs. uniprot
Match: A0A6H5KYY0_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY0_9PHAE) HSP 1 Score: 1740 bits (4507), Expect = 0.000e+0 Identity = 970/1158 (83.77%), Postives = 1000/1158 (86.36%), Query Frame = 1
Query: 412 MWRGISSEADSASTTSGSGVEGGDAAGTPAWAWVDVGIAWAIAPAAGGSLQLSLWGSIVPSWLCVTVALAYGLRAEEVALDGDEADGALVLFASLVVCGLSALAVGYQVLWEQARDARTLMALEDSMDFEDHRRRQSAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVMHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAADVDKSVKTYRLWLSQQMTRACLIHALHPEEDDSVILRVSYARPGLMRVGIEAVWRVAGSRAGGGGSGDDGTSTDQREAPRVLSGWDRDMPAAAWWVRAAALALGGEADYDKSRDREGFHELWFTIPAENVPDDDDLELGTPASARDKATAAAAAAVTGGEGPPAELPDAGASSVLPTRGGSTRSS----RLSEIDKQGEGGVSSTAAGADEERGGLNMTAPRAARRESSRKPSLEPLSSAHKTAGAAGAEAAALPRPGAMAASPTFVNPSPRLSSSAPSSLHGLPAAKKRGTILPAIQDTEISPEGSQTTNVVEFDSDDRARSSRKSVGGAGGTDRNTIGHGYRSSLGGTIVGSSGRGKRVSARPNAPRLEDIRVSRVATDCGFNLHEHANRRPSSAPDPTAAAAAWSGETNSGETTAAASVEATSTPVDQISRSTPNSPKRFAAGGERTSNPRSLSVTVRNLLGTEGGLDKLRESLQEDEANPGKAAAAAEEVRSAMRKTAAAGDKGNVSMHKHEAVARAAGQGAAGMAAARLTSGLFLKRPSSAPSPAAAVTKKASVFGGLVQTLVESNSMNWLGTGKVASNISEEREGDTEDXXXXXXXXXQTLEILLVDPQGLVRWALPRLKERKFFVTVAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVATSIRSMNTSGRAGQEGEELNEPRPSTKLLLHTTSAGSVTFDDLEAFLEEDLVDEYVPHPLDLGTLFDFLKLFEEEDDQYGTRKMSMLLEGGADKSNAATG--------GDSAGQAVSGLVRGLSGKNLSGADLGPQGRPVESGPVTFVARLFGAGRAPXXXXXSMEDVGSTFFSVKGRSSEAHAAAAAAKRPHRVDGGRGASNTRTAGPWRPGLPAVSPGLGAAGDEGGDGVD 3849
MWRG+SSEA+SA T SGSGVEGGDAAGTPAWAWVDVGIAWAIAPAAGGSLQLSLWGSIVPSWLCVTVALAYGLRAEEVALDGD ADGAL+LFASLVVCGLSALAVGYQVLWEQARDARTLMALEDS+DFEDHRRRQ+AFSELLLRHLVTEPSLHVLEAGVKELFKDARIFV+HSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAA+VDKSVK YRLWLSQ MTRACLIHALHP+EDDSVILRVSYARPGLMRVGIEAVWRVAGSR G GGS DGTS D REAPRVLSGWDRDMPAA WWVRAAALALGGEADYD+SRDREGFHELWFTIPAENVPDDDDLEL TPA ARD ATA RLSEIDK+GE GADEERGGL+MTAPRAARRESSRKP+LEP+SSA KT GAAGA AAALPRPGAMA SP+FVNPSPRLSSSAPSSLHGLPAAKKRGTILPAIQDT+IS EGSQTT VVEFDSDDRAR SRKSVGGAGGTDR TIGHGYRSSLGGTIVGSSGRG+R SARPN LEDIR+SRV DC FN EHANRR SSAPDPTAAAAAWSGE NSGETTAAASV TSTPVD+ISRSTPNSPK AAGGERTS RSLSVT+RNLLGTEGGLDKLRESLQEDEAN GKAAAAAE VR+AMRKTA GDKG VSMHKHEAVARAAGQG AGMAAARLTSGLFLKRPSSAPSPAAAVTKKASVFGGLVQTLVESNSMNWLGTGKVASN SEE+ GD D Q LE VAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVA ++RS+N +GRAGQEGE LNEP+PSTKLLLHTTSAGSV FDDLEAFLEEDLVDEYVPHPLDLGTL DFLKLFEEEDDQYGTRKMS LLEGGADKSN GDSAGQAVSGLVR LSGKNL+GADLGPQG PVESGPVTFVARLFGAGRAPXXXXXSMEDVGSTFFSVKGRS EAHAAA AAK+PH VD RGAS+TRTAGPWRPG+PAVSPGLGAAGDEGGDG D
Sbjct: 1 MWRGMSSEAESAGT-SGSGVEGGDAAGTPAWAWVDVGIAWAIAPAAGGSLQLSLWGSIVPSWLCVTVALAYGLRAEEVALDGDGADGALILFASLVVCGLSALAVGYQVLWEQARDARTLMALEDSIDFEDHRRRQAAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVLHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAANVDKSVKIYRLWLSQ-MTRACLIHALHPDEDDSVILRVSYARPGLMRVGIEAVWRVAGSRTGSGGSWGDGTSADHREAPRVLSGWDRDMPAAVWWVRAAALALGGEADYDRSRDREGFHELWFTIPAENVPDDDDLELETPAGARDTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSEIDKRGEXXXXXXXXGADEERGGLDMTAPRAARRESSRKPTLEPISSAPKT-GAAGAGAAALPRPGAMAVSPSFVNPSPRLSSSAPSSLHGLPAAKKRGTILPAIQDTQISLEGSQTTTVVEFDSDDRARGSRKSVGGAGGTDRTTIGHGYRSSLGGTIVGSSGRGERASARPNVTHLEDIRMSRVVADCDFNPDEHANRRSSSAPDPTAAAAAWSGEANSGETTAAASVATTSTPVDRISRSTPNSPKGLAAGGERTSKRRSLSVTIRNLLGTEGGLDKLRESLQEDEANSGKAAAAAEAVRAAMRKTATGGDKGTVSMHKHEAVARAAGQGTAGMAAARLTSGLFLKRPSSAPSPAAAVTKKASVFGGLVQTLVESNSMNWLGTGKVASNNSEEKGGDAGDSEEDTEESGQALE-------------------------VAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVAAAVRSVNINGRAGQEGEGLNEPQPSTKLLLHTTSAGSVKFDDLEAFLEEDLVDEYVPHPLDLGTLSDFLKLFEEEDDQYGTRKMSALLEGGADKSNGGDSTSTVSKYCGDSAGQAVSGLVRSLSGKNLAGADLGPQGGPVESGPVTFVARLFGAGRAPXXXXXSMEDVGSTFFSVKGRSREAHAAATAAKKPHGVDSERGASSTRTAGPWRPGIPAVSPGLGAAGDEGGDGGD 1130
BLAST of mRNA_Ecto-sp6_S_contig108.1138.1 vs. uniprot
Match: D7FY83_ECTSI (Response regulatory domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY83_ECTSI) HSP 1 Score: 1545 bits (4001), Expect = 0.000e+0 Identity = 842/909 (92.63%), Postives = 850/909 (93.51%), Query Frame = 1
Query: 772 MALEDSMDFEDHRRRQSAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVMHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAADVDKSVKTYRLWLSQQMTRACLIHALHPEEDDSVILRVSYARPGLMRVGIEAVWRVAGSRAGGGGSGDDGTSTDQREAPRVLSGWDRDMPAAAWWVRAAALALGGEADYDKSRDREGFHELWFTIPAENVPDDDDLELGTPASARDKATAAAAAAV-TGGEGPPAELPDAGASSVLPTRGGST----RSSRLSEIDKQGEGGVSSTAAGADEERGGLNMTAPRAARRESSRKPSLEPLSSAHKTAGAAGAEAAALPRPGAMAASPTFVNPSPRLSSSAPSSLHGLPAAKKRGTILPAIQDTEISPEGSQTTNVVEFDSDDRARSSRKSVGGAGGTDRNTIGHGYRSSLGGTIVGSSGRGKRVSARPNAPRLEDIRVSRVATDCGFNLHEHANRRPSSAPDPTAAAAAWSGETNSGETTAAASVEATSTPVDQISRSTPNSPKRFAAGGERTSNPRSLSVTVRNLLGTEGGLDKLRESLQEDEANPGKAAAAAEEVRSAMRKTAAAGDKGNVSMHKHEAVARAAGQGAAGMAAARLTSGLFLKRPSSAPSPAAAVTKKASVFGGLVQTLVESNSMNWLGTGKVASNISEEREGDTEDXXXXXXXXXQTLEILLVDPQGLVRWALPRLKERKFFVTVAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVATSIRSMNTSGRAGQEGEELNEPRPSTKLLLHTTSAGSVTFDDLEAFLEEDLVDEYVPHPLDLGTLFDFLKLFEEEDDQYGTRKMSMLLEGGADKSNAATGGDS 3483
MALEDSMDFEDHRRRQSAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVMHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAADVDKSVKTYRLWLSQ MTRACLIHALHP+EDDSVILRVSYARPGLMRVGIEAVWRVAGSR GG TS DQREAPRVLSGWDRDMPAAAWWVRAAALALGGEADYD+SRDREGFHELWFTIPAENVPDDDDLEL TP SARD AT TGGEGPPAELPDAGASSVL TRGGST RSSRL EIDKQGEG VSSTAAGADEERGGL+MTAPRAARRESSR P+LEPLSSAHKT GA GA AAALPRPGAMAASPTFVNPSPRLSSSAPSSLHGLPAAKKRGTILPAIQDTEIS EGSQTTNV+EFDSDDRARSSRKSVGGAGGTDRNTIGHGYRSSLGGTIVGSSGRGK VSARPN PRLEDIRVSRVATDCGFN EHANRRPSSAPDPTAAAAAWSGETN GETTAAASV TSTPVD+ISRS+PNSPKRFAAGGERTS RSLS+TVRNLLGTEGGLDKLRESLQEDEANPGKAAAAAEEVR AMRKTAAAGDKGNVSMHKHEAVARAAGQGAAGMAAARLTSGLFLKRPSSAPSPAAAVTKKASVFGGLVQTLVESNSMNWLGTGKVASNISEEREGDT D QTLEILLVDPQGLVRWALPRLKER FFVTVAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVATSIRSMNTSGRAGQEGEELNEP PSTKLLLHTTSAGSVTFDDLEAFLEEDLVDEYVPHPLDLGTLFDFLKLFEEEDDQYGTRKMS LLEGGADKSN GGDS
Sbjct: 1 MALEDSMDFEDHRRRQSAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVMHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAADVDKSVKTYRLWLSQ-MTRACLIHALHPDEDDSVILRVSYARPGLMRVGIEAVWRVAGSREGGXXXXXXXTSADQREAPRVLSGWDRDMPAAAWWVRAAALALGGEADYDRSRDREGFHELWFTIPAENVPDDDDLELDTPVSARDTATXXXXXXXXTGGEGPPAELPDAGASSVLSTRGGSTSGRTRSSRLGEIDKQGEGSVSSTAAGADEERGGLDMTAPRAARRESSRNPTLEPLSSAHKT-GATGAGAAALPRPGAMAASPTFVNPSPRLSSSAPSSLHGLPAAKKRGTILPAIQDTEISLEGSQTTNVMEFDSDDRARSSRKSVGGAGGTDRNTIGHGYRSSLGGTIVGSSGRGKSVSARPNVPRLEDIRVSRVATDCGFNPDEHANRRPSSAPDPTAAAAAWSGETNIGETTAAASVATTSTPVDRISRSSPNSPKRFAAGGERTSKRRSLSITVRNLLGTEGGLDKLRESLQEDEANPGKAAAAAEEVRGAMRKTAAAGDKGNVSMHKHEAVARAAGQGAAGMAAARLTSGLFLKRPSSAPSPAAAVTKKASVFGGLVQTLVESNSMNWLGTGKVASNISEEREGDTGDSEEDTEESEQTLEILLVDPQGLVRWALPRLKERNFFVTVAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVATSIRSMNTSGRAGQEGEELNEPGPSTKLLLHTTSAGSVTFDDLEAFLEEDLVDEYVPHPLDLGTLFDFLKLFEEEDDQYGTRKMSALLEGGADKSN---GGDS 904
BLAST of mRNA_Ecto-sp6_S_contig108.1138.1 vs. uniprot
Match: UPI001298435A (response regulator n=1 Tax=Roseimaritima sediminicola TaxID=2662066 RepID=UPI001298435A) HSP 1 Score: 55.1 bits (131), Expect = 3.240e-5 Identity = 31/92 (33.70%), Postives = 50/92 (54.35%), Query Frame = 1
Query: 2962 ILLVDPQGLVRWALPRLKERKFF-VTVAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVATSIRSMNTSGRAGQEGEELN 3234
+L+ D +R +L ER+ F VT+A +EA+D++ +A+VD+HMPR+SG + R+R ELEV + S E E ++
Sbjct: 5 LLITDDDEALRLSLGEAFERRGFQVTLAADGQEALDVVHSATIHMALVDVHMPRVSGLQLIERLRGDELEVPCILMSAALDESIRHEAESMH 96
BLAST of mRNA_Ecto-sp6_S_contig108.1138.1 vs. uniprot
Match: A0A3N5TLZ4_9DELT (Response regulator n=2 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3N5TLZ4_9DELT) HSP 1 Score: 54.7 bits (130), Expect = 5.080e-5 Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 2950 QTLEILLVDPQGLVRWALP-RLKERKFFVTVAHSAEEAMDMILEGYYQVAVVDLHMPRMSGTEFCRRVRAHELEVATSIRSMNTSGRAGQEG 3222
+ + +LLVD + R L RLK R VT A S EEA+++I + + VA+VD+ MP M G E RR+R + + + + + S AG EG
Sbjct: 2 KNISLLLVDDEDDFRTTLANRLKRRNLDVTDAGSGEEAIEIIGQKSFDVAIVDIKMPGMDGIETLRRIRKIDPLLEVILLTGHASVEAGIEG 93 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig108.1138.1 >prot_Ecto-sp6_S_contig108.1138.1 ID=prot_Ecto-sp6_S_contig108.1138.1|Name=mRNA_Ecto-sp6_S_contig108.1138.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1288bp MHPHATDGTSQTENNGPGSAAAIDDKRPSTGSQHRISRLRATLVEPIAQAback to top mRNA from alignment at Ecto-sp6_S_contig108:176752..192990- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig108.1138.1 ID=mRNA_Ecto-sp6_S_contig108.1138.1|Name=mRNA_Ecto-sp6_S_contig108.1138.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=16239bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:176752..192990- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:176752..192990- >mRNA_Ecto-sp6_S_contig108.1138.1 ID=mRNA_Ecto-sp6_S_contig108.1138.1|Name=mRNA_Ecto-sp6_S_contig108.1138.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3864bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:176752..192990- (Ectocarpus species6 EcLAC_371)back to top |