mRNA_Ecto-sp6_S_contig108.1136.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1136.1
Unique NamemRNA_Ecto-sp6_S_contig108.1136.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1136.1 vs. uniprot
Match: D7FY80_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80_ECTSI)

HSP 1 Score: 458 bits (1178), Expect = 4.770e-156
Identity = 265/303 (87.46%), Postives = 268/303 (88.45%), Query Frame = 2 
Query:  272 MGRMAVANAKTAPSKPRCRKVGARCRFEGCIGRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEADGCTTRPHYGADGGRARFXXKXXXXXXXXXXXXXXXXXXXRRQPSWARERGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSEENTGTTAGGAAATAAAHPGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQQPEFCAVHRKPGMTDVRNPRCTAVGCTAQPRCGREGDPRPSFCLRHAEPDMVNFRSAGYRDRGKATTPKRRKLAISSSAPSR 1180
            MGRMAVANAKTAPSKPRCRKVGARCRFEGC GRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEAD CTTRPHYGADGGRARFXXK                   RRQPSWARER  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSE+NT TTAGGAAATAAAHPGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQQP+FCA+HRKPGMTDVRNPRCTAVGCTAQPRCGREGDPR           MVNFRSAGYRDRGKATTPKRRKLAISSSAPSR
Sbjct:    1 MGRMAVANAKTAPSKPRCRKVGARCRFEGCTGRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEADACTTRPHYGADGGRARFXXKHKLDGMVDVLNKRCAKKGCRRQPSWARERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSEDNTETTAGGAAATAAAHPGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQQPKFCALHRKPGMTDVRNPRCTAVGCTAQPRCGREGDPRXXXXXXXXXXXMVNFRSAGYRDRGKATTPKRRKLAISSSAPSR 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY80_ECTSI4.770e-15687.46EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:161732..165677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.8
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog2880.D8LFX6
Model size1767
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-24_003480.1
Cds size1047
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1136.1prot_Ecto-sp6_S_contig108.1136.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 162316..165541 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.851929-UTR-Ecto-sp6_S_contig108:161731..1623151682348767.851929-UTR-Ecto-sp6_S_contig108:161731..162315Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 161732..162315 -
1682348767.910875-UTR-Ecto-sp6_S_contig108:165541..1656771682348767.910875-UTR-Ecto-sp6_S_contig108:165541..165677Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 165542..165677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.863015-CDS-Ecto-sp6_S_contig108:162315..1624001682348767.863015-CDS-Ecto-sp6_S_contig108:162315..162400Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 162316..162400 -
1682348767.8704758-CDS-Ecto-sp6_S_contig108:162973..1630781682348767.8704758-CDS-Ecto-sp6_S_contig108:162973..163078Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 162974..163078 -
1682348767.8779185-CDS-Ecto-sp6_S_contig108:163631..1639841682348767.8779185-CDS-Ecto-sp6_S_contig108:163631..163984Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 163632..163984 -
1682348767.885797-CDS-Ecto-sp6_S_contig108:164258..1643631682348767.885797-CDS-Ecto-sp6_S_contig108:164258..164363Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 164259..164363 -
1682348767.8934362-CDS-Ecto-sp6_S_contig108:164754..1649681682348767.8934362-CDS-Ecto-sp6_S_contig108:164754..164968Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 164755..164968 -
1682348767.9009027-CDS-Ecto-sp6_S_contig108:165356..1655411682348767.9009027-CDS-Ecto-sp6_S_contig108:165356..165541Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 165357..165541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1136.1

>prot_Ecto-sp6_S_contig108.1136.1 ID=prot_Ecto-sp6_S_contig108.1136.1|Name=mRNA_Ecto-sp6_S_contig108.1136.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=349bp
MARKEMTTGISPLQLQMQQRQQQQQQQQKQPEPPPFPVKSGFLKGMGRMA
VANAKTAPSKPRCRKVGARCRFEGCIGRPWFAQPGSRVPRACKAHKEEGE
VNVYAPACEADGCTTRPHYGADGGRARFCCKHKLDGMVDVLNKRCAKKGC
RRQPSWARERGARALFCKEHKEDGMVDTKHKTCLHPGCTRFPSKSGAVAT
TKSQPSEENTGTTAGGAAATAAAHPGPARYCAAHAPAGATNVTASRCRHP
GGCSVQPYFGREGGGQQPEFCAVHRKPGMTDVRNPRCTAVGCTAQPRCGR
EGDPRPSFCLRHAEPDMVNFRSAGYRDRGKATTPKRRKLAISSSAPSR*
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mRNA from alignment at Ecto-sp6_S_contig108:161732..165677-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1136.1 ID=mRNA_Ecto-sp6_S_contig108.1136.1|Name=mRNA_Ecto-sp6_S_contig108.1136.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3946bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:161732..165677- (Ectocarpus species6 EcLAC_371)
CCGAAGGCAGCCGTCCATGCCCTGTACTTCACGGCTGCCGGATCCATCCT
TCAGTGCCTGCTGCGTGTGCTGCTGTACGTCAACTCCCACAGAGAGAGAG
ATGCGAAGAAGAGGCTAATTTCTTGCGGAGGATATCATGGCTAGGAAAGA
GATGACAACCGGGATATCACCTCTCCAACTGCAGATGCAGCAACGGCAGC
AGCAGCAGCAGCAGCAGCAGAAGCAGCCAGAGCCACCACCTTTCCCCGTA
AAAAGCGGTTTCCTCAAGGGCATGGGGAGAATGGCAGTCGCAAACGCGAA
GACGGCGCCCTCCAAACCGAGGTATGATACGAAGAGGAGAGAGATCTCGC
GTGCTTGAGAGTCGCTCGAGGAACGGTTGAGGTGTCCTCGCTTTGCTGGG
TTACCTCTGCCGTTATTGGTCGATCAAACATACCAGCGAATATGTACAGT
AAAGACCACGAGGGCTGTGTCCCTTAAAAATAAGCATTTCGTGTGATGCT
ACGATGTACGTGCATCATGACTTTGACTGTTTATTGTGCTTAACACCGTG
TGCGCACACGCAAACTCGTAGCACCACTTTCTCTCGAAATGGGTTGCTCG
AGACATGTCCCACCCCCGGTGCGACTACGTAGCTCACTGGACTTATCTAT
CTTGCACGACCTAAGCAAACAACCCCAACTTGGTTCTTTTCGGACGTCTG
ATCAAACAGATGTCGGAAGGTAGGTGCTCGGTGCCGGTTCGAGGGCTGCA
TTGGGCGTCCTTGGTTCGCACAGCCGGGCTCCAGAGTCCCAAGGGCATGC
AAGGCCCACAAGGAAGAGGGGGAGGTCAACGTTTACGCGCCAGCCTGCGA
AGCGGATGGGTGTACGACGAGGCCGCACTACGGCGCGGACGGTGGGCGGG
CGAGGTTCTGTTGCAAGCACAAGGTGCGTTGTTGTTCGTTCGTGTTTGTA
TCACAGGAATGACTCTCCGCGGTATTGTGAAGGAGTAGGCGTATTGCCAA
GTCTGTAGCCCTGGGGAAGGCAGACTGGGCGTCTGGCTGAGGAATCGGTT
TCACTCGTGCGTGCTCCACCCCTACGCTAAACCTCGCCAGAAACGCCAGC
ACCAAGATACGGGGAAGGTACGGTTGTTAGCCTACGTTGGTTCACATTGC
TGGCTGGATAAGTCAAGAACAACGAGATACGTAGTAATTACTTGGTACAC
TGTAGACCATTGCTTACACCTCATCCCCCCTTTCGTTGACCTCTTGTGAT
GACCCGTTGACCCGTTGTGACCCTCCTCCCATTTCCTTGGCGACGTTTTC
GACGGGTGCTGCAGCTTGACGGGATGGTGGATGTGCTCAACAAACGCTGT
GCGAAGAAAGGGTGCCGAAGGCAGCCGAGCTGGGCCAGAGAAAGAGGAGC
TCGAGCTCTCTTCTGCAAGGTACTTCCTACACCTCCTACTCTTGACGGTT
GGAAGTACTATTTTCGATGCTGAGGTTCACGCTCTTGGTGGTAAACCATC
TTAGTAATATCTTGTTGCTATTGCTGCTTGAACTGGGTGGAGAGATCGGA
ACAGTGTTTACTGTGAACATAACAACAACAACTGCTGCTTATGCTGTAAA
GACTCTGCTGTCGACACCCGCCTTCCTTGCTACACGACCGCCACGCTCTC
GTCGATACCCACGCGAACCCTCTCCCTTCCTCACCCCCCGCAGGAGCACA
AAGAGGACGGCATGGTGGACACAAAGCACAAGACGTGCTTACACCCGGGT
TGCACGCGGTTTCCCTCGAAAAGCGGTGCCGTTGCAACGACCAAGTCGCA
ACCCTCCGAGGAGAACACAGGAACAACGGCGGGGGGGGCGGCAGCAACAG
CGGCGGCCCACCCGGGACCAGCGAGGTACTGCGCCGCGCACGCTCCGGCG
GGAGCGACGAACGTGACCGCTAGCCGGTGCCGGCACCCCGGCGGCTGCTC
CGTGCAGCCATACTTCGGGCGGGAGGGAGGGGGGCAGCAGCCGGAGTTCT
GCGCTGTGCACCGGAAGCCGGGGATGACGGATGTCCGGAACCCGAGGTCT
GTGCGGACTGCTTTCCGGATTTGGTTCGGTCTGTGGCGCTTGAATTTTGG
TGTGCGCGTTTCTTTGAATGGAGCGTCGCTTCGGTTGTAGTTGTCCCCCT
CTTGTTAGGCGTTGATTTGGCAGGCAGGGGGATACGCGCGCTCCTTCTCT
GTTTACGTGCCCGTCGGGGGCCGCGCCACGTCACTGGCAACGGGGTACCC
GATATACATGTTTTTTGTTCTTGTTCTCAACTCCCAGAGTATCTGTTTTC
GCGTTCGGTTGAAGTCCTAGTCTGACGTGCTTCGTTTGGTTTTCTGTTTG
CACCTTCCACCCCCCCTCCCGAACCCCGTTAATCTGCCACCAAATACTAG
CACTCGGACAATCAAGACACGTTCTGAACTGGGTTCGGTCCAGCCTTGTT
TGTATGTCGTTGCAACAAGCACGTTGCCTTGGGAACGCTTAGGCTTCAAG
GGAGGTCGTCGTGCGTAAGGGTGTCAAGTGGCTTTTGTCCCTTGCCTGGT
CCTAGCAGCGCCCAACCTCCAGCCGCATCCACTTCTTTCACATGTGCAGG
TGCACCGCTGTGGGATGCACGGCGCAACCTCGGTGCGGGCGGGAGGGGGA
CCCTCGCCCTTCGTTTTGCCTGCGCCACGCAGAGCCGGACATGGTCAACT
TCAGGTATTTATCCGAGATGGGCTATTGTATCGTTACCCCCTTCGTTTTT
TTTCAACGTAGCGTGGAAAGACTTTTGAATTGAATTTTGACGTATCGTCG
GGTCTTGAGGTAGTTTTTTACTTGTGCTGTAGAATGGAAATGGATCTTCG
AGGCAACACGAGTGGACTAGACTACGTGGAGATGCACGCGAAACTTCGTG
TTCGCGTACGATTTTAATTTTTCCCCTTTGCGTCGATTTGCGGGTCTTGT
CGCCGCTATGTGAACGTACGGCATGGAGACCAACTTGCATTTGGACGGAG
CCCGCCAAGGGTAAACATATTTTTTCTCTCGTCGTCATCAACCCTTTGCC
CACTCGACGCTTGTGAGCCTGGATTGTTTTCACATTCTAGTTGATTCACG
AGTACATACCCAATCGGATATTCGCTTCTTTCCGCAGATTTTTGGAGCGA
TCAACGTCGTACATGACTTGATGGCAACCACGAAGGGAGCACCCCCCTCT
GGTCACCCCTTTGCCCGTTAGCACTTCTCGTTTTGACGGCATTCTCGCGT
ACCCCTGTCGCTGGTGCACCCTCTCAGGTCAGCAGGCTACAGAGACCGAG
GGAAGGCGACAACGCCAAAAAGGAGGAAGCTTGCGATATCGTCGTCGGCC
CCTTCGCGGTAGAATGTTTTCCGGGGATGGGTGGCCTGGCGTAAGGGGAA
GAGAGATCTTAACCTGGAAAGACGAATGGCGAAGGGGGTAGGGAGAACAG
TAATATACCTTGATGAAAGCATGGTTGTGGTGTTCACGCCCCCGGCGTGA
TGGATGCACCCGCTTGGGGAAGGGAGAACAGCAGTTTACCTTGTTGAAAA
ACAGGACGCATTGGTCATGCTTGTAACGCCGTCGGGTTGATGGATGCACA
AGCTTGGAGCTAGGTGCGCCGTTTGGTTGGTCCGTTTCGATTTTATTGAG
TTTTGTGTGGCGGCCAGCTGGCCGTCGCTGAGATGAGGTCATGCTCGTGA
AGTAGCTTTCTTTGCTTATTTCGATTTGGAATCGTTTGATGCAGTTTAGC
AGGCTGCCGGTTGCTTGATGTTTTCGGGTGGGGTGACAGGTGTGCCCCGT
CGTATGTGTGCGCGTGTTTCGTTCTTGTTTGTTGTCCGTTAGTGGGAGGA
TGCCTTTTACCCCTATCGATTATTGGGGGTATCCCTTTGAGAGCCCCTCC
GCCATCGCGTGGAGTAATCAATGCTAGTGTAACGCGTGCTCGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:161732..165677-

>mRNA_Ecto-sp6_S_contig108.1136.1 ID=mRNA_Ecto-sp6_S_contig108.1136.1|Name=mRNA_Ecto-sp6_S_contig108.1136.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:161732..165677- (Ectocarpus species6 EcLAC_371)
ATGGCTAGGAAAGAGATGACAACCGGGATATCACCTCTCCAACTGCAGAT
GCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCCAGAGCCAC
CACCTTTCCCCGTAAAAAGCGGTTTCCTCAAGGGCATGGGGAGAATGGCA
GTCGCAAACGCGAAGACGGCGCCCTCCAAACCGAGATGTCGGAAGGTAGG
TGCTCGGTGCCGGTTCGAGGGCTGCATTGGGCGTCCTTGGTTCGCACAGC
CGGGCTCCAGAGTCCCAAGGGCATGCAAGGCCCACAAGGAAGAGGGGGAG
GTCAACGTTTACGCGCCAGCCTGCGAAGCGGATGGGTGTACGACGAGGCC
GCACTACGGCGCGGACGGTGGGCGGGCGAGGTTCTGTTGCAAGCACAAGC
TTGACGGGATGGTGGATGTGCTCAACAAACGCTGTGCGAAGAAAGGGTGC
CGAAGGCAGCCGAGCTGGGCCAGAGAAAGAGGAGCTCGAGCTCTCTTCTG
CAAGGAGCACAAAGAGGACGGCATGGTGGACACAAAGCACAAGACGTGCT
TACACCCGGGTTGCACGCGGTTTCCCTCGAAAAGCGGTGCCGTTGCAACG
ACCAAGTCGCAACCCTCCGAGGAGAACACAGGAACAACGGCGGGGGGGGC
GGCAGCAACAGCGGCGGCCCACCCGGGACCAGCGAGGTACTGCGCCGCGC
ACGCTCCGGCGGGAGCGACGAACGTGACCGCTAGCCGGTGCCGGCACCCC
GGCGGCTGCTCCGTGCAGCCATACTTCGGGCGGGAGGGAGGGGGGCAGCA
GCCGGAGTTCTGCGCTGTGCACCGGAAGCCGGGGATGACGGATGTCCGGA
ACCCGAGGTGCACCGCTGTGGGATGCACGGCGCAACCTCGGTGCGGGCGG
GAGGGGGACCCTCGCCCTTCGTTTTGCCTGCGCCACGCAGAGCCGGACAT
GGTCAACTTCAGGTCAGCAGGCTACAGAGACCGAGGGAAGGCGACAACGC
CAAAAAGGAGGAAGCTTGCGATATCGTCGTCGGCCCCTTCGCGGTAG
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