mRNA_Ecto-sp6_S_contig108.1134.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1134.1
Unique NamemRNA_Ecto-sp6_S_contig108.1134.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1134.1 vs. uniprot
Match: D7FY78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY78_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.030e-52
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:  343 FTRRQTQREAA-DRAARRTPSQGTQARCLKVAVKMESAAHPVEATQMANGTPRPVPPMRKPTWNPARRQQEAKNLQRRLERAEKEGVILTRANRVYPNFRRRAAPGKGK 666
             TRRQ QRE A DRAARRTPSQGTQARCLKVAVKMESAAHPVEA QMANGTPRPVPPMRKPTWNPARRQQEAKNLQRRL++AEKEGVILTRANRV PNFRRRAAPGKGK
Sbjct:   31 LTRRQAQRETAEDRAARRTPSQGTQARCLKVAVKMESAAHPVEAVQMANGTPRPVPPMRKPTWNPARRQQEAKNLQRRLKKAEKEGVILTRANRVDPNFRRRAAPGKGK 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY78_ECTSI4.030e-5292.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:144008..146548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1903
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003500.1
Cds size897
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.6320004-UTR-Ecto-sp6_S_contig108:144007..1445591682348767.6320004-UTR-Ecto-sp6_S_contig108:144007..144559Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 144008..144559 +
1682348767.651856-UTR-Ecto-sp6_S_contig108:145197..1453271682348767.651856-UTR-Ecto-sp6_S_contig108:145197..145327Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 145198..145327 +
1682348767.6731317-UTR-Ecto-sp6_S_contig108:146224..1465481682348767.6731317-UTR-Ecto-sp6_S_contig108:146224..146548Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 146225..146548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348767.6637855-CDS-Ecto-sp6_S_contig108:145327..1462241682348767.6637855-CDS-Ecto-sp6_S_contig108:145327..146224Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 145328..146224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1134.1prot_Ecto-sp6_S_contig108.1134.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 145328..146224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1134.1

>prot_Ecto-sp6_S_contig108.1134.1 ID=prot_Ecto-sp6_S_contig108.1134.1|Name=mRNA_Ecto-sp6_S_contig108.1134.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=299bp
MANPENREKVNLRAQERKKGLSKAELEALRERKRLNLIRLRERKKDASKQ
GAHLYASWIPVYEKEMLRYHQTSVPKIKATVDAFNREGFHVIRKALTQSD
LRAVLSDATETTRRANESSSWANMFSHMDRQGRLRTSSDRQMTMMDDHGA
AAAVCKKLVWENLGSGGRFQMELRAVTLMNTLAGNDQPDHTDYGVDNAGD
WGIGFPVSGIVCFEEGSTFSTVEGSLDDKKFEKRVEIDIHLGDVVLFHGA
EVHRGARCPTGNKSLHLNAACRWFKAPENKTYPTSKLKTCSVVAWRFG*
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mRNA from alignment at Ecto-sp6_S_contig108:144008..146548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1134.1 ID=mRNA_Ecto-sp6_S_contig108.1134.1|Name=mRNA_Ecto-sp6_S_contig108.1134.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2541bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:144008..146548+ (Ectocarpus species6 EcLAC_371)
CAGAGGGCGGGTGCTTTCCACCACGCCACTGCGTAAGACCAATCACAAAG
TGACCTCCGGGCAGTGCGGCCACGCAGGCTGCTCCAAGCAGCCAAGCTTT
GGCGCGGCGGGCAGCCGTAAGAAAGAGTTCTGCGCGGAGCATGCAACGGA
CGTTGCGGTTCGCGTGGAATTGGAGCGGACCCGGGGCAGTCAGCCTATCA
GGAAGAAACGATCTCGGCCTGCACCGTCGTTAGACGCCGCCGAGGAGGCG
GCTATGGGCCAAGGGTCTGGAGAACAGGACCCGAATGGTCAGGCGGGCAA
GGTTGATGCTGCGCCTTTGGAGGCAAGGAGTGATACTCAACCTTTACCCG
GAGGCAAACCCAGAGAGAGGCCGCTGATAGGGCGGCTCGTCGCACACCTA
GCCAAGGTACACAAGCACGTTGTCTCAAGGTTGCTGTGAAGATGGAGAGT
GCCGCGCATCCCGTAGAGGCTACACAGATGGCGAACGGAACGCCGAGGCC
TGTGCCGCCGATGAGGAAGCCCACATGGAACCCCGCGAGGAGGCAACAAG
AGGTATGAGATGCCTCGTGATCGGGCGAAGGCGGTGTTCGTAGCTCCCTG
TCGTTTTCTACAAAAAAGTTATTTCGTGGAGCTGTTGAACTGCCTCAGTC
TTGCCATTGCTGGTGTTGCCGCCGTCTGCCGCCGCCACCTCCCTACTACA
CAGCGTGAAATGTCGCGCGCGTAAATCCTTCAAATGAATATCGCAAAGGA
TCCTCAAAATCGCTCCTCGACAGCGATAGGAAGACCCTCAAACGGGTCGA
TTGCGGGTCACTCGTGGAACCTAATCGAGTCTCGATTCTTCCTCGAAGGG
CTTTTTCTTGTGGTCGTATTCTCTCTTCCCCCCCCCTGTTCTCGCTACAT
CGAAGGAGGGCAATCTCATGTTCTCCAATATGGCATAGTGGAAGATTGCG
ATAGAAGAAAATAAGAGGTTCGTCAAGAAACGGAAGAGAAAAAAGAGGGG
AAAAAAAAAACAAAAGACGGAAGATGAAAAGCGAAGGCGAATGTTGTTGT
GAAGAAGGTCATCTGGCTCGAAACTCATGCTCTCTTCTCCGTCCTGTGGT
GTTCAGATGCCCAACCAACCATGATGTTCTATCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCTCCCTCTCTCCCTCTCTACTCCGATTCAGGCGAAGAACT
TGCAACGACGTCTTGAGAGAGCAGAGAAAGAGGGCGTTATCTTGACGCGA
GCCAATCGCGTGTACCCAAACTTCCGACGACGGGCGGCACCGGGGAAAGG
AAAGATCGGTCCGGAAGTATATGGCGAACCCGGAGAATAGGGAGAAGGTT
AACCTCCGTGCTCAAGAGAGAAAGAAGGGCTTATCCAAAGCGGAGCTGGA
AGCCCTGAGAGAGAGGAAACGCCTGAACTTAATTAGACTCAGGGAGAGGA
AGAAAGACGCGAGCAAGCAGGGTGCTCACCTGTACGCGAGTTGGATACCC
GTGTACGAGAAAGAAATGCTGAGGTACCACCAGACAAGCGTTCCCAAGAT
CAAGGCGACGGTAGACGCGTTCAATCGAGAGGGCTTTCATGTGATCCGGA
AAGCCCTGACTCAATCAGACCTACGAGCCGTCCTGTCTGACGCTACAGAA
ACCACCCGGCGCGCAAACGAGAGCTCGAGCTGGGCCAACATGTTTTCCCA
CATGGACAGGCAGGGGCGCCTCAGGACAAGCAGTGACCGGCAGATGACAA
TGATGGACGATCATGGTGCCGCAGCAGCTGTTTGCAAGAAGCTCGTTTGG
GAGAACCTCGGAAGCGGGGGGCGATTCCAGATGGAATTGCGCGCCGTAAC
TCTCATGAACACGCTGGCTGGAAACGACCAGCCCGATCATACCGATTACG
GCGTGGACAACGCTGGCGACTGGGGGATTGGCTTTCCTGTCAGCGGGATC
GTTTGCTTCGAGGAAGGGAGCACATTTTCGACCGTTGAGGGTTCGCTGGA
TGACAAGAAGTTCGAGAAGAGAGTGGAGATTGATATCCACCTCGGAGATG
TCGTGCTTTTTCACGGGGCGGAAGTTCATCGAGGGGCTAGATGCCCCACT
GGCAACAAGAGTCTGCACTTGAATGCCGCATGTAGATGGTTCAAGGCACC
TGAAAACAAGACCTATCCCACTAGTAAGTTGAAGACTTGTAGCGTTGTCG
CCTGGCGGTTTGGTTGAAAATTGCTTTCACGTGAAAATACGTTCAACTTG
AAGATGGAAGCTTGGAGCTCTCCCGAGGCTTCAGGAGCGGAGGGGATGAG
AAAAACTTGGGGTTGCCCTGTTTTGTTACTGTGACCTACAGCAGTAGATG
CGGAGAGAGCAGGACCCAAATTGTTCAGATTTGCACGAGTAAAAACGACG
ACTGGCTACATCGCTGTCCAGCTTGAATTTGGAGCTGCAATGAAGTGCCG
CCATAGAGGCTGCTCCAAACGGGCAACCTTTGGCGCGCGGGGCAGCCGTA
AGAGAGAGTTCTGCGCGCAACATGGACCAAGCGTTCTTGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:144008..146548+

>mRNA_Ecto-sp6_S_contig108.1134.1 ID=mRNA_Ecto-sp6_S_contig108.1134.1|Name=mRNA_Ecto-sp6_S_contig108.1134.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=897bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:144008..146548+ (Ectocarpus species6 EcLAC_371)
ATGGCGAACCCGGAGAATAGGGAGAAGGTTAACCTCCGTGCTCAAGAGAG
AAAGAAGGGCTTATCCAAAGCGGAGCTGGAAGCCCTGAGAGAGAGGAAAC
GCCTGAACTTAATTAGACTCAGGGAGAGGAAGAAAGACGCGAGCAAGCAG
GGTGCTCACCTGTACGCGAGTTGGATACCCGTGTACGAGAAAGAAATGCT
GAGGTACCACCAGACAAGCGTTCCCAAGATCAAGGCGACGGTAGACGCGT
TCAATCGAGAGGGCTTTCATGTGATCCGGAAAGCCCTGACTCAATCAGAC
CTACGAGCCGTCCTGTCTGACGCTACAGAAACCACCCGGCGCGCAAACGA
GAGCTCGAGCTGGGCCAACATGTTTTCCCACATGGACAGGCAGGGGCGCC
TCAGGACAAGCAGTGACCGGCAGATGACAATGATGGACGATCATGGTGCC
GCAGCAGCTGTTTGCAAGAAGCTCGTTTGGGAGAACCTCGGAAGCGGGGG
GCGATTCCAGATGGAATTGCGCGCCGTAACTCTCATGAACACGCTGGCTG
GAAACGACCAGCCCGATCATACCGATTACGGCGTGGACAACGCTGGCGAC
TGGGGGATTGGCTTTCCTGTCAGCGGGATCGTTTGCTTCGAGGAAGGGAG
CACATTTTCGACCGTTGAGGGTTCGCTGGATGACAAGAAGTTCGAGAAGA
GAGTGGAGATTGATATCCACCTCGGAGATGTCGTGCTTTTTCACGGGGCG
GAAGTTCATCGAGGGGCTAGATGCCCCACTGGCAACAAGAGTCTGCACTT
GAATGCCGCATGTAGATGGTTCAAGGCACCTGAAAACAAGACCTATCCCA
CTAGTAAGTTGAAGACTTGTAGCGTTGTCGCCTGGCGGTTTGGTTGA
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