mRNA_Ecto-sp6_S_contig108.1129.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1129.1
Unique NamemRNA_Ecto-sp6_S_contig108.1129.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:121577..122427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size851
Hectar predicted targeting categorysignal peptide
Exons1
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348765.935258-UTR-Ecto-sp6_S_contig108:121576..1216781682348765.935258-UTR-Ecto-sp6_S_contig108:121576..121678Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 121577..121678 +
1682348765.954702-UTR-Ecto-sp6_S_contig108:122164..1224271682348765.954702-UTR-Ecto-sp6_S_contig108:122164..122427Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 122165..122427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348765.945529-CDS-Ecto-sp6_S_contig108:121678..1221641682348765.945529-CDS-Ecto-sp6_S_contig108:121678..122164Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 121679..122164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1129.1prot_Ecto-sp6_S_contig108.1129.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 121679..122164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1129.1

>prot_Ecto-sp6_S_contig108.1129.1 ID=prot_Ecto-sp6_S_contig108.1129.1|Name=mRNA_Ecto-sp6_S_contig108.1129.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=162bp
MAIFSCAASSTILTHVSTLTGAIICFIKIRALFPPTLLWVLGALTERQQH
CPHRVPHRVLYPTQCSSLGRYQTFDQGAHRKDVLRCLSPNNVWPPVPSGG
TNLNFIRMRLSGTPVQVEGLNPPLYDLFPLSIFLSVKSLQYGRVGGSSTY
PSVFSFVLFLG*
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mRNA from alignment at Ecto-sp6_S_contig108:121577..122427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1129.1 ID=mRNA_Ecto-sp6_S_contig108.1129.1|Name=mRNA_Ecto-sp6_S_contig108.1129.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=851bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:121577..122427+ (Ectocarpus species6 EcLAC_371)
GCATTTGTGCCGTTTACTCCAACACGCGGGCTATTTGAGCCTCCTGTGGC
AGCCGGGGAGAGGTGTATACCAAGCAAGACATTCTCGACGGCCGTTCTCG
CAATGGCAATTTTTTCGTGTGCTGCGTCCTCCACTATCCTCACTCACGta
tcAACACTGACTGGTGCAATCATATGCtTTATCAAGATCCGTGCACTCTT
TCCCCCAACCCTTCTGTGGGTTTTAGGGGCATTAACAGAACGTCAGCAGC
ATTGTCCCCATCGTGTACCCCATCGTGTATTGTACCCAACGCAATGTTCT
TCGCTTGGGAGATACCAAACGTTCGATCAGGGGGCCCACAGAAAGGACGT
CCTCCGTTGTCTATCTCCGAACAACGTGTGGCCACCAGTCCCCAGCGGTG
GCACTAACTTAAACTTTATCCGTATGCGCCTTTCGGGCACTCCGGTACAG
GTTGAAGGACTTAACCCCCCCCTTTACGATCTTTTCCCGCTCTCAATCTT
TCTCTCGGTCAAAAGCCTTCAGTATGGTCGCGTAGGAGGTAGTTCTACCT
ATCCGTCAGTATTTTCCTTTGTTCTGTTTCTCGGTTGAAGAAACCCGACG
CACGGGGTCCCCGCAGAATGCACCCCCCCTGCGGTGATACTACGTCACTC
TGCACACTCTCAACAACCATAATCTTTGCTACGCTGTGATCCCCGGACAA
AAATGTGCCATGGTACTTGAGAGTGGTGAGATCGACACGAAGGTGACAGT
CACCACGGGTTACAACCCAATTCTAGAGACCGCGGCGGCAACGAACACTG
CTACCGACAAAGGGGGTATGACGGTGGTGGCATACTCCCGGGACCCCCTC
C
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:121577..122427+

>mRNA_Ecto-sp6_S_contig108.1129.1 ID=mRNA_Ecto-sp6_S_contig108.1129.1|Name=mRNA_Ecto-sp6_S_contig108.1129.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:121577..122427+ (Ectocarpus species6 EcLAC_371)
ATGGCAATTTTTTCGTGTGCTGCGTCCTCCACTATCCTCACTCACGtatc
AACACTGACTGGTGCAATCATATGCtTTATCAAGATCCGTGCACTCTTTC
CCCCAACCCTTCTGTGGGTTTTAGGGGCATTAACAGAACGTCAGCAGCAT
TGTCCCCATCGTGTACCCCATCGTGTATTGTACCCAACGCAATGTTCTTC
GCTTGGGAGATACCAAACGTTCGATCAGGGGGCCCACAGAAAGGACGTCC
TCCGTTGTCTATCTCCGAACAACGTGTGGCCACCAGTCCCCAGCGGTGGC
ACTAACTTAAACTTTATCCGTATGCGCCTTTCGGGCACTCCGGTACAGGT
TGAAGGACTTAACCCCCCCCTTTACGATCTTTTCCCGCTCTCAATCTTTC
TCTCGGTCAAAAGCCTTCAGTATGGTCGCGTAGGAGGTAGTTCTACCTAT
CCGTCAGTATTTTCCTTTGTTCTGTTTCTCGGTTGA
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