mRNA_Ecto-sp6_S_contig108.1121.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig108.1121.1
Unique NamemRNA_Ecto-sp6_S_contig108.1121.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig108.1121.1 vs. uniprot
Match: A0A6H5K946_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K946_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-7
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:    1 LRWEEVHQLAQLSNMTHKDPRLVARW 78
            L+WEEVHQLAQLSNMTHKDPRLVARW
Sbjct:    3 LQWEEVHQLAQLSNMTHKDPRLVARW 28
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig108.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K946_9PHAE3.800e-796.15Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig108contigEcto-sp6_S_contig108:55816..56312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size497
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348765.875441-UTR-Ecto-sp6_S_contig108:55815..559381682348765.875441-UTR-Ecto-sp6_S_contig108:55815..55938Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 55816..55938 +
1682348765.8972888-UTR-Ecto-sp6_S_contig108:56286..563121682348765.8972888-UTR-Ecto-sp6_S_contig108:56286..56312Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig108 56287..56312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348765.888072-CDS-Ecto-sp6_S_contig108:55938..562861682348765.888072-CDS-Ecto-sp6_S_contig108:55938..56286Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig108 55939..56286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig108.1121.1prot_Ecto-sp6_S_contig108.1121.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig108 55939..56286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig108.1121.1

>prot_Ecto-sp6_S_contig108.1121.1 ID=prot_Ecto-sp6_S_contig108.1121.1|Name=mRNA_Ecto-sp6_S_contig108.1121.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=116bp
MKMDETLERLSQDMSQWNECHLHSYTCRISWRIDKSRGNAGNTGFSVRKD
LKRLRYTWCSTYRYTELTYMLMHGTIVAFFLKHVRDFRVNPCVLKNKEHY
RCPGVCCGEGTMLCM*
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mRNA from alignment at Ecto-sp6_S_contig108:55816..56312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig108.1121.1 ID=mRNA_Ecto-sp6_S_contig108.1121.1|Name=mRNA_Ecto-sp6_S_contig108.1121.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=497bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:55816..56312+ (Ectocarpus species6 EcLAC_371)
CCACCTGGCCACAAGCCGTGGGTCCTTGTGGGTCATGTTGGACAGCTGCG
CTAGCTGGTGCACCTCCTCCCACCGCAGCTGTAGCAACGTTCCGAACGAA
GAGGAGAGGCGTCGAGGGAAGAAATGAAGATGGATGAAACTCTGGAGAGA
TTGTCGCAGGATATGTCGCAATGGAATGAGTGCCACCTGCACAGCTATAC
CTGTCGTATTTCCTGGAGGATAGACAAGTCGAGGGGGAACGCTGGCAACA
CTGGCTTCTCAGTGCGTAAGGACCTCAAGAGACTGAGATACACCTGGTGC
AGCACTTATCGCTATACAGAGTTAACATACATGCTGATGCACGGGACTAT
TGTAGCATTTTTTCTCAAACACGTTCGCGATTTTCGTGTTAACCCTTGTG
TTCTAAAAAACAAGGAACACTACCGCTGTCCTGGCGTCTGCTGCGGAGAA
GGAACAATGCTATGTATGTAGCCATCATGCGTGGGTGTATGATCGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig108:55816..56312+

>mRNA_Ecto-sp6_S_contig108.1121.1 ID=mRNA_Ecto-sp6_S_contig108.1121.1|Name=mRNA_Ecto-sp6_S_contig108.1121.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp6_S_contig108:55816..56312+ (Ectocarpus species6 EcLAC_371)
ATGAAGATGGATGAAACTCTGGAGAGATTGTCGCAGGATATGTCGCAATG
GAATGAGTGCCACCTGCACAGCTATACCTGTCGTATTTCCTGGAGGATAG
ACAAGTCGAGGGGGAACGCTGGCAACACTGGCTTCTCAGTGCGTAAGGAC
CTCAAGAGACTGAGATACACCTGGTGCAGCACTTATCGCTATACAGAGTT
AACATACATGCTGATGCACGGGACTATTGTAGCATTTTTTCTCAAACACG
TTCGCGATTTTCGTGTTAACCCTTGTGTTCTAAAAAACAAGGAACACTAC
CGCTGTCCTGGCGTCTGCTGCGGAGAAGGAACAATGCTATGTATGTAG
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