mRNA_Ecto-sp6_S_contig106.1047.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1047.1
Unique NamemRNA_Ecto-sp6_S_contig106.1047.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig106.1047.1 vs. uniprot
Match: D7G453_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 4.210e-131
Identity = 199/209 (95.22%), Postives = 204/209 (97.61%), Query Frame = 1 
Query:    1 MRIAVAALGLGLASIIPGSVDGFVVPAGRVVDLVPSSRSDSLHRAGVVGDRSRLGLSSSSGRNPISTLSRDGGARQISTAGVKATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 627
            MRIAVAALGLGLAS+IPG+VDGFVVPAGRVVD+VPSSRSDSLHRAGV+GDRSRLGLS  S RNP+STLSRDGGARQ STAGV ATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ
Sbjct:    1 MRIAVAALGLGLASVIPGTVDGFVVPAGRVVDVVPSSRSDSLHRAGVMGDRSRLGLSGLSERNPVSTLSRDGGARQTSTAGVTATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G453_ECTSI4.210e-13195.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:231180..235756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1138
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002210.1
Cds size630
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1047.1prot_Ecto-sp6_S_contig106.1047.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 231688..235756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348756.1618695-UTR-Ecto-sp6_S_contig106:231179..2316871682348756.1618695-UTR-Ecto-sp6_S_contig106:231179..231687Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 231180..231687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348756.1744788-CDS-Ecto-sp6_S_contig106:231687..2317951682348756.1744788-CDS-Ecto-sp6_S_contig106:231687..231795Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 231688..231795 -
1682348756.1843185-CDS-Ecto-sp6_S_contig106:232563..2326661682348756.1843185-CDS-Ecto-sp6_S_contig106:232563..232666Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 232564..232666 -
1682348756.1920996-CDS-Ecto-sp6_S_contig106:233190..2334361682348756.1920996-CDS-Ecto-sp6_S_contig106:233190..233436Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 233191..233436 -
1682348756.1992114-CDS-Ecto-sp6_S_contig106:234057..2341781682348756.1992114-CDS-Ecto-sp6_S_contig106:234057..234178Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 234058..234178 -
1682348756.206967-CDS-Ecto-sp6_S_contig106:235704..2357561682348756.206967-CDS-Ecto-sp6_S_contig106:235704..235756Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 235705..235756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1047.1

>prot_Ecto-sp6_S_contig106.1047.1 ID=prot_Ecto-sp6_S_contig106.1047.1|Name=mRNA_Ecto-sp6_S_contig106.1047.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=210bp
MRIAVAALGLGLASIIPGSVDGFVVPAGRVVDLVPSSRSDSLHRAGVVGD
RSRLGLSSSSGRNPISTLSRDGGARQISTAGVKATALSARAGRGAEEGGQ
EDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDP
IRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKE
DLAKDAWLQ*
back to top

mRNA from alignment at Ecto-sp6_S_contig106:231180..235756-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1047.1 ID=mRNA_Ecto-sp6_S_contig106.1047.1|Name=mRNA_Ecto-sp6_S_contig106.1047.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4577bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:231180..235756- (Ectocarpus species6 EcLAC_371)
ATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATCCC
AGGTTTGCATTTTTTTCTCGGTTGAAGACACATCGGATATGCATACCATG
CATCGTAAGCACACGTTGACTGCTGTGCCGCCCTCAGCCCGTAGGCCTGG
AGACTAGGAAGCCGTGTGCGCTTTGCGCCGCCGACATGACTAAGGCTATT
GGGGGCTGCAATGGCTCCCGTGCACCACAATCCAGTCATTACAGCAAAAG
TTGAAGGTTGATGACTCAAAACCGTGTGGGGGGGGAGATGATCCAGGTTA
CGGAGCTGTAACGTTGAGTGCATCCCGTTGTACGGTGTGGTAGACTGACT
GGACTAAACACAATGGCATCAACAGCATCGTATTTCAAACCGCACGAGTC
GCGGAAGGTACTGTGGTGGAGTGATCTAGCAGCGTAATCTGATACATGAT
CGCGCATCAAGGAATGCAGCCGCTGCTGCTGTGCAAAAGCACATGAACAT
GACCTCCATCCTTCTCATGTGCTCATGGTCGTCCTTCGTGCCATACCTGA
TACATGCACATCACCTGTCGCTCCCAGTCGTTTTCTGCTGGATGATCTTA
CCCATCTCACTGATTGGCCCCGATTCGGAGTTGCACGCATAGCTCCCTGT
TACTCTGTGCTGCACCTTCATATAACAGCGCGTGAAGGGTGCAGCACTTT
CCTCCCGGAGGGCTCTCGAACTTCTTACTTTGTACTATAATATCGCCCCC
CGTTGATATCTACCAGAGCAGCTGTGGTTCTCGCAGAATCTCGTTGTTCT
TCGCAATTGGTCGGAATTTTTCTGTTTTTTGTTTTTCTCTGACTCTGGAA
CTTCGTATCTATGGCATCGATGATGGAGAAGATGGGGCACTGGACAGAGG
CCAGTTATTTTTGTTTTGTCCCTGGTACGCCCTCAAAGGCGGCGGCGGCT
GATAGCTATTTACTTCGTGTTCATCAGTATTACCGCAGCCAGCCACAGGC
AGCAGCGCACACAAACGGAGTGAATGCACACATTTCGTTGCAGAAAACCT
TGATGAAGGGCCGCATCTGCAGGTCTCTGTTGCTGTCTGTGCAAAGGTTC
TACATGTTGTAGCCACATTTGGCAACGAGCAACTGCAGTGCCGTGCATGA
GGTGTGGTTGTTAGGACCAATGGTGGTCACAGTTGCCAAAATGCCAACAA
TCCTACCTTGTCGGTAAAAGTGCTTGTTGTGTTGTTCGTTTGTACACATG
GCTGCCATGTGTTCGTGTCAGCGCGGCAAGGACGGAGCGTCGCCATGTCC
CCGAACTATACTCGTTGCAGTACCTGCGATGGTGCCGTTGCTGCCGCGCG
CCACCACACACTCAACGCCTCTCCCGTCCAGCAAGATTTCACGCTTCCTG
AACTGTAGACTTTCCGGTCGCGGAGGCTTGATTAGTCCATCCGGGGAAGG
ACGCGGAAGGGCCAGACTTGATTCACCATCAGAGATGCCAGGCCGCAAAC
CTGCCTCTCGTAGAATACTGCCGTGCTTTTGAACGACCCTGTTTGTGTTT
GTTCCCTTGTCCCACCCCATCCAAACAGGTTCAGTTGATGGGTTCGTTGT
TCCCGCTGGGAGAGTCGTCGATTTGGTCCCGTCGTCGAGAAGCGATTCTC
TACACCGCGCCGGAGTCGTGGGGGACCGGAGCCGGTTGGGCCTTAGCAGG
TACGCGTGACGGCCTTCTAAATGCTTCGATGCTATCGCCTTCGTCCCTGT
CGAGGATTCTTTCGCGGATGTTGACTACTCGTTTCACGTTTTGGTATAAC
CCTCGCGAGGCAATGTATCTATCGCAAACCGATTCCGATGCCGATGCACT
CCGGTTGCCGTACAAAGCTCGCGAGGGGGAACAAACGACGGTGGCACCAT
CATTTCGCGGATGTTGACGACAATCAACGCCAGTGAAGACGGCGAGATCC
CTCATTTTTCAGTAGTGCGCCCATCGCCGGTGCAAACCTGACGAACGCAG
AAGTCGCTATTTCGAACAATTGTAACCCGTGTCGTGCATTAGGTAACATC
ACCGCGTTTGAACCGTTCTTTCCACAGCTTTTCGAATCACTGCCGGTTGC
TGTTCTTATCCTAGGAGTGTACACGAAGCCCCTCTTCTGGATCACCGGAG
TGGAAAGGGAATACAAGCTTCCAGTTGCCTTCCTCCGGACACTTCTCCTG
TTGAGCGCATGCCGTGCGGATCTAAAGGGATTCAGCGAGCGTAGCTGTAC
CTGTTGGCGACGACGATGTTGCTCTTGCTCCAAACAATCCGCTCACCCTC
CCTTACGTTTTCTGTTCCAGTTCAAGCGGAAGAAACCCGATCTCGACCCT
CAGCCGCGACGGCGGGGCTCGTCAAATTTCCACGGCTGGTGTCAAGGCAA
CGGCGTTGAGTGCAAGGGCGGGACGCGGAGCAGAAGAGGGAGGACAGGAG
GATGGGCCATCTTCCGCTGCTGCAATGAGCGGGGTCGGGAGCGTCGGAAG
CAACGTCCTGCTTCTCGTAGCATCGGTGATGGTGGTGAAGGGTCTTCTCC
TGCCCGAGAATGTTCGGTAAGAAGCACAAGCAGACGAAGGGGGGCGTGCA
GAGACAGGGGGTAGGCGCAAGGGGGGTAAGCAGATGAGAGAGAGGAGGAG
GAGGAAAATAGACTAGCAGCGAGATGAAGAGACTGGTAGGAAAATGTGGA
AGTATGAAGTCTAGACGGAGCCATCAAGTAACGGGTTGCATTGTGTTGTT
TGAACTGGATTCGAGATGCAGAGTGTGGGACAGACTGGCTTTTGAGCCTC
GATTTCAGGTTGGTTGTCGGTCGGCTTCCGTCAATCGCGTACTTCCGCTG
TCTCGTTCTCGTTTTGGGTTCCAAGAGTGCTGACCCCATGGCCCGTGTGT
CATGCAATTAATTGGTGCCGAGATTTCCACCTTCCCACGCTGTTGTTCCG
TTTCCTTATTTGATCTCCTCACCAGATGATTCTCCCTCCACCTCACCAAC
TGCCCCCCGTTTCAGCATTTTCGTGTTCGTCGTCTCCTTTCTGTCACCTT
CTCCTGTGTGCATACTTTGACCTTTCCTCAATTGTTTTAGGCACCTGGGC
TTTTGTCCGACCGAGGACCCTATTAGGGGAAGGGACACCCTGCCGTGGAG
GATGATGATTGAGTCCGGCAGAGAGTGCGGCACCATCCCGGAGGTGCGTT
ACAGTGAGGGTACACGAATATGGCAACCTGAGAAACAGCGAAGACTGTGT
CTCCTTGGGCATATGCGTAGAACTCAAGGATTCGTGAAGAAATTGACGTC
GAAGGTAAAGGCGGTTGACTTCCTGCTGCTGCGTGGATCAGAGGTTTGAA
TTTTCACAAGCATCGGAACACTGCAATCTCGATTAGGCTTGATTTCGATT
ACAGCAGTATGGAATTTCTGGACGGCTAAGGCGGCAAGCTGAGACAGCAT
AGCTGTGTGCCATTCACTCACGACTATTCCTTTGAGTGAATATCGGAATG
CCGCTTCGGCGTTTTGTTGAAAGGCGATATCGCGTCGTGCGCCTTTGAGT
GGGCGACTACGGTATGGGCTCTCACCGGTACTTTCGGAGCAAAGCTCGAA
TTCAGTGATTCGTTTTTCATCAGAGACACCAGGATGACGAGAGTGTTGCG
TAACGCTTGAATAGATTACTCCGCACGTTCATTGTAGTTATGCCTCGTCC
GCCTCTTTCGTGCTCCGAGGCTCCCAGTCGGCCGCCTAAAGGTCTATGGC
TTGGTCACACACCCGAAACAGATATCTGGGGACCTGACCTGTTACCCCTT
GGTCTACAGATGATGTCACTCATTGCACATTATTGCCATTTCATACACGA
AATGAGTGACGTCATCGCTTCGCGCGAAATGGCATCGACGTCCTCCGCGC
GTGTTCGATCCCCGTCATATTGTTTTCGTTGGTTCTTGATGTTGCCTCTT
TTCTCTTTTAGGTGATGACCAAGTACGTCACTGCCCCGCTCGCGTTCCCG
GGAACGCCTGAGTGGGGTATGATGCTCAACACCAAGGAAGACCTTGCCAA
GGACGCCTGGCTGCAATAGCATTATGATGCCAGCCGGGGTGTGCTCCGAT
GTTTTTACCTTAACCACGTGCCCCTTCAGCGCAAGCCTGCAGGATAGAGA
CACCTCAGTTGATGTCAACACGCGAGTATTCTGTCGTGCAAGCTATTGCC
GTCATGGATTGTCCCTGTTCGGGTAGTGACTTCGTCGTCGAAACAGGCAG
CAACTTGAGCATCGAAACATTGGATCTTCGAGACATCGGCAGTGGTTGAG
TTTTGTACGCCGATGATGTTGGGCGGAGATCAAGTCTACAGCATTACCAT
CGTAGTTCAACGACGAGGTCGAGAGAGCCGTAAACAAGTGTGCAAAGTAG
ATAACGCTACCGCACGCAGGACGATTCAGCAGCCTACAATACAGGGGTGC
GCGTATCCATCAGCGCCCACCTTCTTGCCTGTGAAACACTCTCCCGTATC
TTCGCAATACAGGAATGAATCAGCAATGGCCTATCTCCCCTCAGCTGTCT
CCCTGTAATTGAAACGTCAAACCTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:231180..235756-

>mRNA_Ecto-sp6_S_contig106.1047.1 ID=mRNA_Ecto-sp6_S_contig106.1047.1|Name=mRNA_Ecto-sp6_S_contig106.1047.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:231180..235756- (Ectocarpus species6 EcLAC_371)
ATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATCCC
AGGTTCAGTTGATGGGTTCGTTGTTCCCGCTGGGAGAGTCGTCGATTTGG
TCCCGTCGTCGAGAAGCGATTCTCTACACCGCGCCGGAGTCGTGGGGGAC
CGGAGCCGGTTGGGCCTTAGCAGTTCAAGCGGAAGAAACCCGATCTCGAC
CCTCAGCCGCGACGGCGGGGCTCGTCAAATTTCCACGGCTGGTGTCAAGG
CAACGGCGTTGAGTGCAAGGGCGGGACGCGGAGCAGAAGAGGGAGGACAG
GAGGATGGGCCATCTTCCGCTGCTGCAATGAGCGGGGTCGGGAGCGTCGG
AAGCAACGTCCTGCTTCTCGTAGCATCGGTGATGGTGGTGAAGGGTCTTC
TCCTGCCCGAGAATGTTCGGCACCTGGGCTTTTGTCCGACCGAGGACCCT
ATTAGGGGAAGGGACACCCTGCCGTGGAGGATGATGATTGAGTCCGGCAG
AGAGTGCGGCACCATCCCGGAGGTGATGACCAAGTACGTCACTGCCCCGC
TCGCGTTCCCGGGAACGCCTGAGTGGGGTATGATGCTCAACACCAAGGAA
GACCTTGCCAAGGACGCCTGGCTGCAATAG
back to top