mRNA_Ecto-sp6_S_contig106.1046.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1046.1
Unique NamemRNA_Ecto-sp6_S_contig106.1046.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1046.1 vs. uniprot
Match: D7G452_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G452_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 7.110e-29
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 QEEKPAPIQRPDEDLRTCSRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNPTVTGMRWPERLR 195
            QEEKPAPIQ PDEDLRTCSRDARGQR SRKAAGVPGVPPV VRQLTLSDCFNPTVTGMRWPERLR
Sbjct:    3 QEEKPAPIQPPDEDLRTCSRDARGQRSSRKAAGVPGVPPVFVRQLTLSDCFNPTVTGMRWPERLR 67
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BLAST of mRNA_Ecto-sp6_S_contig106.1046.1 vs. uniprot
Match: D7G4A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 6.170e-21
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   43 LRTCSRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNPTVTGMRWPERLR 195
            L T SRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNP VTGMRWPERLR
Sbjct:   35 LWTASRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNPKVTGMRWPERLR 85
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BLAST of mRNA_Ecto-sp6_S_contig106.1046.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.930e-16
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   43 LRTCSRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNPTVTGMRWPERLR 195
            L T SRDARGQ RSRK AGVPGVPPVLVRQL LSDCFNPT+TG+RWPERLR
Sbjct:  150 LWTASRDARGQGRSRKVAGVPGVPPVLVRQLKLSDCFNPTLTGIRWPERLR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G452_ECTSI7.110e-2995.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4A9_ECTSI6.170e-2194.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L639_9PHAE1.930e-1686.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:227315..229715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1176
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-02_002200.1
Cds size1176
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.3915448-CDS-Ecto-sp6_S_contig106:227314..2278031682348754.3915448-CDS-Ecto-sp6_S_contig106:227314..227803Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 227315..227803 -
1682348754.4000685-CDS-Ecto-sp6_S_contig106:228112..2287431682348754.4000685-CDS-Ecto-sp6_S_contig106:228112..228743Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 228113..228743 -
1682348754.4070866-CDS-Ecto-sp6_S_contig106:229659..2297151682348754.4070866-CDS-Ecto-sp6_S_contig106:229659..229715Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 229660..229715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1046.1prot_Ecto-sp6_S_contig106.1046.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 227315..229715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1046.1

>prot_Ecto-sp6_S_contig106.1046.1 ID=prot_Ecto-sp6_S_contig106.1046.1|Name=mRNA_Ecto-sp6_S_contig106.1046.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=392bp
QEEKPAPIQRPDEDLRTCSRDARGQRRSRKAAGVPGVPPVLVRQLTLSDC
FNPTVTGMRWPERLREIAFGKQFNNSLSGVEWPRTLVHVRFGCSFNQPLV
RVEFPDGLESLAFGCGFSQPLAGVKLPRGLRSLGLGEAFDQPLDGVEFPD
GLQTLALGGVFDQPLCGVKWPAGLERLALGREFNQPISDVSWPQGLRQIA
FSQDFDRPIESVAFPSSVQWLEFGADFNQDVGGVKWPADLEYLKFGCRFN
KTLEHTRLPRGLAVLKFCCLWDHSLARVDLPESLQLLGLGDGFDQPLDEV
RFPPSLAYVYLGDSFDQPLYEVKWPVNLKALYLGDSFDYPLENDEWPEGL
ESLFLGQSFSEDLDSIDVPASLTIHVVGGSSEESEAVEWPF*
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mRNA from alignment at Ecto-sp6_S_contig106:227315..229715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1046.1 ID=mRNA_Ecto-sp6_S_contig106.1046.1|Name=mRNA_Ecto-sp6_S_contig106.1046.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2401bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:227315..229715- (Ectocarpus species6 EcLAC_371)
CAGGAGGAGAAGCCAGCGCCTATCCAGCGGCCGGATGAAGACCTGCGCAC
GTGCAGGTGAGGGTGGGCTGGAAAAGCATGGGTGATTTGCCTCCGGCCAA
GGGGTGCTTCGTCTACGAAAAGGAGCAGTGCTGGTCTCCTTGCCTGCATT
TGAAACCTGCTGTTGCTACTACCGGTGGCGTCTAGGGAATGGCGGCCGGA
ATGATGTGACTCTTCACTTCTCTCCTGGACTGTCAGCTCTTTGGTGTGAG
GGTTCGGCCGGGGAAAGTTCAGCTGAGTGAACGAGCCCTGGCATAGCGCA
TCGAACATGCCAGGATATACGCTATCCCCGGGCTCGTTCACCCAATGTAC
ACTAACGTTGATACTGATGCCCGAGAGTCCTGAAGGCATCCTTGACACAC
ACCATTCTCCATCACACGAAACATCTGTCCTTCGCTGTGATTTTCCGATG
CGGCGCAATTTCGACTGCAATCTCCTCTTCGTACAGTACCCCTTCAAGCA
TTCACGAAATTCCAGGGTCAACGACCCTTTCATGCTACACTGTAGCTTTC
AAGCGGTGTACACCCAACTTGATGCATTCCAAATTTTCTACCTAGAGTCA
AAGGGTCACGTCCTGTGAGCAGTTACCGGTGTCCATCGGTGGCTCAGCGG
AATCACACACCACCCACCCAATCTGTCCAAGCCGGAAGTGAAAGCCAGAT
TCGTGCCATTTTGACACGCATGCAGGTGGGCCAGGTGTAGACGGCTCAGA
GGGCAGAGACGACAATGCTGGCATCGCCACCAACAGCAGAACACCAACGC
AGCCTCTCCTCTCGGCCGCCTTGAGGGTTGTTCTTCTCTCCGAATTGGTA
CCCGTCATGATCATCAAGCAGCTACAGCTGGCCTCTTCATCGGTCTGCGG
AGACTGTCGGGAGTTGACCGAATTCCACGTCAACGTCAACTCCCGGACTC
CCCGACGCCTTTGGATGGCCAGCCGAGACGCACGTGGCCAACGACGCAGC
CGGAAAGCGGCAGGAGTCCCCGGGGTACCTCCCGTGCTCGTAAGGCAGCT
GACACTGAGTGATTGCTTCAACCCAACAGTGACCGGCATGCGCTGGCCTG
AACGATTGAGGGAGATTGCCTTCGGCAAGCAATTCAACAACAGCCTCAGC
GGCGTCGAGTGGCCACGGACGCTGGTGCACGTCCGTTTCGGGTGCTCATT
CAACCAGCCGCTAGTCAGAGTGGAGTTTCCCGACGGCTTGGAGAGCCTGG
CCTTCGGGTGCGGCTTCAGCCAGCCCCTGGCTGGAGTGAAGCTACCTCGC
GGGCTACGGTCGCTCGGGCTCGGCGAGGCCTTTGACCAGCCGTTGGACGG
GGTGGAGTTTCCCGATGGACTGCAGACACTTGCTCTTGGTGGTGTCTTCG
ACCAGCCGTTGTGTGGAGTGAAGTGGCCGGCGGGTCTCGAGAGACTGGCG
TTGGGAAGAGAGTTCAACCAGCCCATCAGTGATGTATCGTGGCCTCAGGG
GCTTCGCCAGATCGCGTTCAGCCAAGATTTTGACCGCCCGATCGAGTCGG
TGGCGTTCCCATCCTCTGTGCAATGGTTGGAGTTCGGGGCAGACTTCAAC
CAGGTACGTGATATGAACGAGTGTCAGGTTGCGAAAGAGCATGATACCAT
GAACAGCTTGTCTTGGAAAGGGTAGTGTAGTTTATGATGAGCAACGGTTG
GGCGAGCTTGGTGTTACAGTAAATTGATGGATTCTTTCCTCAGCGGTGAT
TTCTAGTGTACCTCTGCCCATGTGATAGCTTGCCAACATTTCTATTCTTC
TGACTACGGCTGCGATCGTCTCATTTGCCTGCCGTCATTCTCGCCTTATT
GCTCATTCGGCTCCTCATACTCCCGCTTTTCATGTGTGTTGTTGTCTTTC
GTTTACGTGTAGGATGTTGGTGGTGTCAAGTGGCCGGCAGATCTCGAGTA
CCTCAAGTTCGGCTGCAGGTTCAACAAGACCTTGGAGCACACACGGCTTC
CCCGAGGACTAGCTGTCTTGAAGTTCTGCTGCCTGTGGGACCACTCTCTT
GCACGGGTAGACTTGCCCGAGTCTTTGCAACTCCTGGGCCTGGGTGATGG
ATTCGATCAACCGCTAGACGAGGTTCGCTTTCCTCCTAGCCTCGCCTATG
TTTACCTTGGCGACAGCTTCGACCAGCCGTTGTACGAAGTGAAATGGCCG
GTCAACCTGAAGGCGCTGTACTTGGGAGATTCGTTCGATTACCCGCTTGA
AAACGACGAGTGGCCGGAGGGGTTGGAGTCCCTCTTCTTGGGGCAGAGCT
TCTCCGAGGACCTAGACTCCATCGATGTGCCGGCGAGCTTGACTATCCAT
GTTGTGGGCGGCTCGTCCGAAGAATCGGAGGCCGTCGAATGGCCTTTTTG
A
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:227315..229715-

>mRNA_Ecto-sp6_S_contig106.1046.1 ID=mRNA_Ecto-sp6_S_contig106.1046.1|Name=mRNA_Ecto-sp6_S_contig106.1046.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:227315..229715- (Ectocarpus species6 EcLAC_371)
CAGGAGGAGAAGCCAGCGCCTATCCAGCGGCCGGATGAAGACCTGCGCAC
GTGCAGCCGAGACGCACGTGGCCAACGACGCAGCCGGAAAGCGGCAGGAG
TCCCCGGGGTACCTCCCGTGCTCGTAAGGCAGCTGACACTGAGTGATTGC
TTCAACCCAACAGTGACCGGCATGCGCTGGCCTGAACGATTGAGGGAGAT
TGCCTTCGGCAAGCAATTCAACAACAGCCTCAGCGGCGTCGAGTGGCCAC
GGACGCTGGTGCACGTCCGTTTCGGGTGCTCATTCAACCAGCCGCTAGTC
AGAGTGGAGTTTCCCGACGGCTTGGAGAGCCTGGCCTTCGGGTGCGGCTT
CAGCCAGCCCCTGGCTGGAGTGAAGCTACCTCGCGGGCTACGGTCGCTCG
GGCTCGGCGAGGCCTTTGACCAGCCGTTGGACGGGGTGGAGTTTCCCGAT
GGACTGCAGACACTTGCTCTTGGTGGTGTCTTCGACCAGCCGTTGTGTGG
AGTGAAGTGGCCGGCGGGTCTCGAGAGACTGGCGTTGGGAAGAGAGTTCA
ACCAGCCCATCAGTGATGTATCGTGGCCTCAGGGGCTTCGCCAGATCGCG
TTCAGCCAAGATTTTGACCGCCCGATCGAGTCGGTGGCGTTCCCATCCTC
TGTGCAATGGTTGGAGTTCGGGGCAGACTTCAACCAGGATGTTGGTGGTG
TCAAGTGGCCGGCAGATCTCGAGTACCTCAAGTTCGGCTGCAGGTTCAAC
AAGACCTTGGAGCACACACGGCTTCCCCGAGGACTAGCTGTCTTGAAGTT
CTGCTGCCTGTGGGACCACTCTCTTGCACGGGTAGACTTGCCCGAGTCTT
TGCAACTCCTGGGCCTGGGTGATGGATTCGATCAACCGCTAGACGAGGTT
CGCTTTCCTCCTAGCCTCGCCTATGTTTACCTTGGCGACAGCTTCGACCA
GCCGTTGTACGAAGTGAAATGGCCGGTCAACCTGAAGGCGCTGTACTTGG
GAGATTCGTTCGATTACCCGCTTGAAAACGACGAGTGGCCGGAGGGGTTG
GAGTCCCTCTTCTTGGGGCAGAGCTTCTCCGAGGACCTAGACTCCATCGA
TGTGCCGGCGAGCTTGACTATCCATGTTGTGGGCGGCTCGTCCGAAGAAT
CGGAGGCCGTCGAATGGCCTTTTTGA
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