mRNA_Ecto-sp6_S_contig106.1041.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1041.1
Unique NamemRNA_Ecto-sp6_S_contig106.1041.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1041.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 8.880e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  144 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 260
            MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 39
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BLAST of mRNA_Ecto-sp6_S_contig106.1041.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.470e-13
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:  144 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 260
            MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B8_ECTSI8.880e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRQ3_9PHAE1.470e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:183321..184039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size260
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002100.1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.7993898-CDS-Ecto-sp6_S_contig106:183320..1833681682348755.7993898-CDS-Ecto-sp6_S_contig106:183320..183368Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 183321..183368 -
1682348755.8087056-CDS-Ecto-sp6_S_contig106:183827..1838961682348755.8087056-CDS-Ecto-sp6_S_contig106:183827..183896Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 183828..183896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.8184896-UTR-Ecto-sp6_S_contig106:183896..1840391682348755.8184896-UTR-Ecto-sp6_S_contig106:183896..184039Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 183897..184039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1041.1prot_Ecto-sp6_S_contig106.1041.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 183321..183896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1041.1

>prot_Ecto-sp6_S_contig106.1041.1 ID=prot_Ecto-sp6_S_contig106.1041.1|Name=mRNA_Ecto-sp6_S_contig106.1041.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=39bp
MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE
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mRNA from alignment at Ecto-sp6_S_contig106:183321..184039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1041.1 ID=mRNA_Ecto-sp6_S_contig106.1041.1|Name=mRNA_Ecto-sp6_S_contig106.1041.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=719bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:183321..184039- (Ectocarpus species6 EcLAC_371)
CAGGGGCGCGGGATTCCCTCTCCATCAAGCATCTGTCATCAACCCCTCTT
GTCTACATACTCATATTTCGCCCGGGAGGATAGGAGGGCGGCTCGGCTTT
TTGGCGCGCTCCGAAGACACACAGACGTCCCGGGAGACGACATATGAGCA
CCATCAGCAAAGCGGAAGGACAGAGGAAACTCAGCCAAATCCTAAGCTCG
AAGCGCAAAGAGGTATTCACATTGAACAGAGGGGTGGTTGTGTGTTCCGT
GTTGTCCTGTGCCGGTGTGTTTTAATTTGAGCCGGTTTCTTTCTTGGAAC
AATACTGCTGTCTGCCGCGCTGTGTGTACCTCGCCTCGCTTGTCCAGACC
CCTAACGTTCACCGGGAAAACACTCTTGTTCATTCGCCATGTGCGGGGGG
TCGTGCGCGCTTAGACCACAAATAATTCAAACGAACGAGTGCGGGCTGCT
TGCACACAAGAACTTTACGCCCAGACCACCCTCCCTTATCTTTGTGCGTC
GTGTTTTTGGCTGTTCGGCCGCGAATCCCAGCTTGCCGATGTCACTTTTG
GAGCAACCAACCAACACGCGATTGAACCCTTGCTTCCCTCTCTTCTCGCG
CGCGCTCGCCTGCGTGCATTCCTTTCGCTTCTGTATCGGCCGCACCATCG
CACACTGACTGGCGGAATCAGGATCCCGTTGGCCTGCTTCGTGCTCAGCG
AAACGGAACGCTAAACGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:183321..184039-

>mRNA_Ecto-sp6_S_contig106.1041.1 ID=mRNA_Ecto-sp6_S_contig106.1041.1|Name=mRNA_Ecto-sp6_S_contig106.1041.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:183321..184039- (Ectocarpus species6 EcLAC_371)
ATGAGCACCATCAGCAAAGCGGAAGGACAGAGGAAACTCAGCCAAATCCT
AAGCTCGAAGCGCAAAGAGGATCCCGTTGGCCTGCTTCGTGCTCAGCGAA
ACGGAACGCTAAACGAG
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