mRNA_Ecto-sp6_S_contig106.1028.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1028.1
Unique NamemRNA_Ecto-sp6_S_contig106.1028.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1028.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 2.040e-83
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:    1 MSGSLGQHTGVIVAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDTLSAEVADLEATIALAAEASDLDTARKEHERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG 414
            MSGSLGQ+TGVI AVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLD LSAEVADLEATIALAAEASDLDTARKE+ERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG
Sbjct:    1 MSGSLGQYTGVIAAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG 138
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BLAST of mRNA_Ecto-sp6_S_contig106.1028.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 4.530e-75
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1 
Query:    1 MSGSLGQHTGVIVAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDTLSAEVADLEATIALAAEASDLDTARKEHERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG 414
            MSGSLGQHTGVI AVV  LVAVA TTAVARKWKSGG+KRRMLGNIASGREF+DTLSAEVADLEATIALAAEASDLDTAR+EHERKSREHDE VTQVLTHLDKCTGG EI VARKKQIHRAE LGLRIS ILPGG VDG
Sbjct:    1 MSGSLGQHTGVIAAVVFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGGHVDG 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4A6_ECTSI2.040e-8397.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHT5_9PHAE4.530e-7590.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:66549..68855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size874
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001960.1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.9748158-CDS-Ecto-sp6_S_contig106:66548..666771682348754.9748158-CDS-Ecto-sp6_S_contig106:66548..66677Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 66549..66677 +
1682348754.9826415-CDS-Ecto-sp6_S_contig106:67121..672351682348754.9826415-CDS-Ecto-sp6_S_contig106:67121..67235Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 67122..67235 +
1682348754.9896371-CDS-Ecto-sp6_S_contig106:67652..677571682348754.9896371-CDS-Ecto-sp6_S_contig106:67652..67757Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 67653..67757 +
1682348754.9967778-CDS-Ecto-sp6_S_contig106:68329..683981682348754.9967778-CDS-Ecto-sp6_S_contig106:68329..68398Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 68330..68398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.0039227-UTR-Ecto-sp6_S_contig106:68398..688551682348755.0039227-UTR-Ecto-sp6_S_contig106:68398..68855Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 68399..68855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1028.1prot_Ecto-sp6_S_contig106.1028.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 66549..68398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1028.1

>prot_Ecto-sp6_S_contig106.1028.1 ID=prot_Ecto-sp6_S_contig106.1028.1|Name=mRNA_Ecto-sp6_S_contig106.1028.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=139bp
MSGSLGQHTGVIVAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGRE
FLDTLSAEVADLEATIALAAEASDLDTARKEHERKSREHDEHVTQVLTHL
DKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG*
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mRNA from alignment at Ecto-sp6_S_contig106:66549..68855+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1028.1 ID=mRNA_Ecto-sp6_S_contig106.1028.1|Name=mRNA_Ecto-sp6_S_contig106.1028.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2307bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:66549..68855+ (Ectocarpus species6 EcLAC_371)
ATGAGCGGGTCCTTGGGACAGCACACGGGTGTGATTGTGGCGGTCGTGTG
CGGCCTAGTTGCCGTTGCTGGTACTACAGCTGTCGCCCGCAAGTGGAAGA
GTGGGGGCACCAAGAGACGCATGCTGGGGGTGAGCAAACGGAGGTCTTGC
AGGCGGGAATGGTGATGAGTAGCTGCCACGTCACGCCCCGCATTGTGCGT
ACTAGTACAGCATGGCAGCAACAGCAGCGACGAGTTTATTCAGCGGTTGG
ATGCGGGGCAATTGCCCCGCCCCTTGTCAACCAAGCAACCAATATGACTG
TCCGTGCTGTCTTCATCTTCTTGTACGTGCAGGTTTCCCGCCGCGTAATC
CGTTGTAGCCCACGGCCACGGCTGCTTTGGAAAACAGTTTCACAGATACA
GCTTGCACGTGTCTGCAATCCCTCTAGGAGACTGCTGTGAAATGATTGCT
GCAACGATCGTTTTCGCGCGTCGTGGAGTGGATCACCCCCTACACTGACA
TTAGTTCTACGTGTACATTGATCAAGATGCTGTTCCTGTCCTCATGTGTT
ATCGCCGTGACTGGTCGCCTCAGAACATCGCTAGTGGTCGCGAATTTTTA
GATACGCTATCGGCAGAGGTGGCGGATTTGGAGGCTACAATTGCTCTGGC
AGCCGAGGCTTCCGACCTCGACACTGCACGAAAAGAAGTAAGCCGTTCAG
ATGTAAACACAAACGTGTTGGGGTTCATGTCACGCTGGGAATTTTTGGGT
TTGAATCCAGCGGATTTGCAGCCGCCAGCCCTTTTGCCAGCTTCACGTTG
CTGCAAGCTAGCCTGGCCCCTTCAAGGTTCAAGTAGGTCAGGCGGGGGTA
GCCCTGTAGGATTGTTGCTACTAGTATTGATGTTGGTCTGTTCTTGTTCT
TGTTCGTTGTGCGTAAAACAGGGATAGCGCGAAGACTGCACAGTTGATCG
GTCTCTTCGTCTCATTATCTCACGTTTCTGGGAAATTGCGGCTCGTCTCA
TCACAAGGTACCTCTGGCTTTGAGCATCACACAAACACCCACCCGCCCAC
TCTCGCCCCTCGTTCCCGCCGCGGCCCTTCCCTTGCCTCCAAACCTCCAC
GAAGCACGAGAGAAAAAGCAGAGAGCATGACGAGCACGTGACTCAGGTTT
TGACGCACCTGGACAAGTGCACGGGGGGTGACGAAATAGGCGTCGCCCGA
AAAAAGCAGGTGATTATTGAACCCAGCAATTCTGGGGAATGGTTTCAGTC
TTCCTTTTCGACCCGGGCAAGCCATACCGTTGTTCACGCTAGTTTGCCTA
CACCTGTCCCCGAGCCATGGTGCGGTAGGCAGCGGCCACGACGGAACCAA
ATGAATTGCCCGTCGATTTTGAAACTTTCTCGACCGGCAATATTCGTTTT
AAGCGGGCTAACCGCTTTCATGAAACCATTTGTAGCACAATCTGCGTATC
TGCTCATCATGTGTTGTCGGCCAACGACCCGGCGCTTGTATTCCACGTAG
CGCACTCTTGTGGTCGTTTCTGCCAACACGTTTTAGCTACTGTAGCCTTC
GACCAATTCCAGGCGTTGAAACATCATTTCGTGCTGCCGCCGCCGCCGCC
GCCGCTAAACCCGCTCCCGACTCTACAAGTTGGACGCAGTCGAGAACACG
CAACTTCCTCAAACCAACAAGTGAACGGCCGTTCCACCAGAGTTTTTGTC
GCGGGCGATCCACAAAGCATACAGTATACCCCGAATTGTCGAGTGATGGT
TTTCATCCTTGTGTCCGACGTTTTTTGGCAGATCCATCGAGCAGAGGTGT
TGGGGCTTCGCATCAGCAAAATTTTGCCTGGGGGACCCGTGGATGGATGA
TCAGAGGAAAACGAGGCGCAATGCGTCAGACCCATCTGCGTCTCCCCAGA
ATATTCGAACCTTTTGCACACTTGTATGCACGGGAGCGCTTCTACGTCTG
CTGGTGTTTTGCATCACTTCCTTGGCAAAGGTCCATCAAATGCTTGCATT
CTCAAGAATATCCTTGTATAGGGTGCACAGCAGTACTGTTGTTGCTGTTG
CAGTTGGTTATGTTCGTCATGGGTGCTGCATATTAAAGAGTATACTGTAG
TCGGTTTATGGTGGATGGGTCTGCCATTTTCAGGGCCGGTAGCGCACCTT
CACTGTGCATTGAACAGCAAATGACATGCTCAGCAGCGGTCAAGCAAGCA
CCACATTCAAGTCACGGATGGAGGTCAGAGGCCTAAATCGAGCCCGATCC
CCCTTTCCCCCTTTAGAGATACGTGTACATTCTGTGTGTTTCCCTACGAT
TTACGTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:66549..68855+

>mRNA_Ecto-sp6_S_contig106.1028.1 ID=mRNA_Ecto-sp6_S_contig106.1028.1|Name=mRNA_Ecto-sp6_S_contig106.1028.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:66549..68855+ (Ectocarpus species6 EcLAC_371)
ATGAGCGGGTCCTTGGGACAGCACACGGGTGTGATTGTGGCGGTCGTGTG
CGGCCTAGTTGCCGTTGCTGGTACTACAGCTGTCGCCCGCAAGTGGAAGA
GTGGGGGCACCAAGAGACGCATGCTGGGGAACATCGCTAGTGGTCGCGAA
TTTTTAGATACGCTATCGGCAGAGGTGGCGGATTTGGAGGCTACAATTGC
TCTGGCAGCCGAGGCTTCCGACCTCGACACTGCACGAAAAGAACACGAGA
GAAAAAGCAGAGAGCATGACGAGCACGTGACTCAGGTTTTGACGCACCTG
GACAAGTGCACGGGGGGTGACGAAATAGGCGTCGCCCGAAAAAAGCAGAT
CCATCGAGCAGAGGTGTTGGGGCTTCGCATCAGCAAAATTTTGCCTGGGG
GACCCGTGGATGGATGA
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