mRNA_Ecto-sp6_S_contig106.1025.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1025.1
Unique NamemRNA_Ecto-sp6_S_contig106.1025.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:47376..47974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size601
Hectar predicted targeting categorysignal peptide
Exons1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.5316048-CDS-Ecto-sp6_S_contig106:47375..477471682348754.5316048-CDS-Ecto-sp6_S_contig106:47375..47747Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 47376..47747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.539047-UTR-Ecto-sp6_S_contig106:47747..479741682348754.539047-UTR-Ecto-sp6_S_contig106:47747..47974Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig106 47748..47974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1025.1prot_Ecto-sp6_S_contig106.1025.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 47376..47747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1025.1

>prot_Ecto-sp6_S_contig106.1025.1 ID=prot_Ecto-sp6_S_contig106.1025.1|Name=mRNA_Ecto-sp6_S_contig106.1025.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=124bp
RLRSSFFVVLLWSVTLVHAQRFSCTCTVQSVSPTRPINSLIQDLGSDPES
ENNLDTLCLQILTPQGLRSYSPREHSRKNSSGWRHASPRIELSPPSQPLG
VSKSTPYRTRPPGRPAQPSTIPT*
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mRNA from alignment at Ecto-sp6_S_contig106:47376..47974+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1025.1 ID=mRNA_Ecto-sp6_S_contig106.1025.1|Name=mRNA_Ecto-sp6_S_contig106.1025.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=599bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:47376..47974+ (Ectocarpus species6 EcLAC_371)
CGCTTGAGATCCTCTTTTTTTGTTGTGCTCTTATGGTCGGTCACGCTTGT
GCACGCACAACGCTTCTCGTGTACGTGCACCGTACAGTCGGTCTCTCCGA
CTCGACCAATCAACTCACTCATTCAAGACCTCGGGTCCGATCCGGAGTCA
GAAAATAATCTCGATACATTATGTCTCCAAATTCTGACTCCCCAAGGGCT
CAGGTCCTACTCCCCTCGAGAACACTCACGAAAAAACAGTTCTGGTTGGA
GACATGCCTCCCCAAGAATTGAGCTCTCACCACCCAGCCAACCGCTTGGA
GTTTCCAAGTCAACCCCTTACAGGACCAGACCACCGGGACGACCGGCTCA
ACCATCAACCATCCCGACATGAAATGCGCTTTTCGACACATGTACTCTTA
CTTATTCCCGCGGGATTTGGTTCGCAGAATGAAAGCCATTCTCGTCCTCT
ACTTGGGATACTCACCCCCTAAACGCACGTGCCTACAGTGGTATCGATCT
TCCATTCATATATCCCCCCGTCCCACCCGCCAAAACTCAGAAACGTTACC
CAACATCTGGATACGATCTTCTGCCGTATTCTCATTAAACACTGGATGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:47376..47974+

>mRNA_Ecto-sp6_S_contig106.1025.1 ID=mRNA_Ecto-sp6_S_contig106.1025.1|Name=mRNA_Ecto-sp6_S_contig106.1025.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:47376..47974+ (Ectocarpus species6 EcLAC_371)
CGCTTGAGATCCTCTTTTTTTGTTGTGCTCTTATGGTCGGTCACGCTTGT
GCACGCACAACGCTTCTCGTGTACGTGCACCGTACAGTCGGTCTCTCCGA
CTCGACCAATCAACTCACTCATTCAAGACCTCGGGTCCGATCCGGAGTCA
GAAAATAATCTCGATACATTATGTCTCCAAATTCTGACTCCCCAAGGGCT
CAGGTCCTACTCCCCTCGAGAACACTCACGAAAAAACAGTTCTGGTTGGA
GACATGCCTCCCCAAGAATTGAGCTCTCACCACCCAGCCAACCGCTTGGA
GTTTCCAAGTCAACCCCTTACAGGACCAGACCACCGGGACGACCGGCTCA
ACCATCAACCATCCCGACATGA
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