mRNA_Ecto-sp6_S_contig105.998.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig105.998.1
Unique NamemRNA_Ecto-sp6_S_contig105.998.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A1V0SLS6_9VIRU (GIY-YIG domain-containing protein n=1 Tax=Klosneuvirus KNV1 TaxID=1977640 RepID=A0A1V0SLS6_9VIRU)

HSP 1 Score: 104 bits (259), Expect = 2.120e-27
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 KPVVYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTKT 258
            K  VYSLNL  G+KYVG T N + RMNQHFSGNGAKWTQ+++PVSIN     ++   A+  E+ VY  M  YHG  KVRGAG+TK+
Sbjct:    6 KHYVYSLNLANGKKYVGMTANIDRRMNQHFSGNGAKWTQKHEPVSINRISEYKNKSEARQVETEVYYKMKNYHGGGKVRGAGYTKS 91          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A6C0CDR8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CDR8_9ZZZZ)

HSP 1 Score: 68.9 bits (167), Expect = 1.220e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 VVYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTKT 258
             +Y LNLE G+KYVGKT NF+ RM+QHFSGNG+K T++ KP+            + +  +      ++KY G DKVRG  +T +
Sbjct:   41 TIYKLNLEDGKKYVGKTTNFDRRMDQHFSGNGSKVTKKFKPIDGKTIDEVHGFFSDEVEQGCTEEYINKY-GYDKVRGGYYTNS 123          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A7S2HMZ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMZ1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.550e-12
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 KPVVYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHT 252
            K   Y+ +L GG+KYVG T    AR+  H SGNGA+ TQ+ KPVS+N T   RS   AK AE+  YR      G   VRGAG+T
Sbjct:   78 KAFTYTASLPGGKKYVGYTQKPAARLGAHSSGNGARVTQELKPVSVNITPH-RSIAAAKKAETRTYRAEVAKAGVGSVRGAGNT 160          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A2E5R4A8_9PROT (CCHC-type domain-containing protein n=1 Tax=Pelagibacteraceae bacterium TaxID=2026775 RepID=A0A2E5R4A8_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 VYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTKTT 261
            +Y L LE G+KY+GKT + + RM+QHFSG GAK TQ+ KP+       C      K  +    +N+ K HG   VRG  +T +T
Sbjct:   42 IYKLKLENGKKYIGKTVDIDRRMDQHFSGIGAKVTQKFKPIEGEVIDTCPGYFANKVEQKHTDKNIKK-HGYANVRGGKYTNST 124          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A2E4XLR3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A2E4XLR3_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 8.760e-10
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    7 VVYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTKT 258
             +Y +NL+GG+KYVGKT + + RM+QHFSGNGAK T++ KP++           +    +      + KY G + VRG  +T +
Sbjct:   41 AIYKMNLKGGKKYVGKTTDVDRRMDQHFSGNGAKVTKKFKPINAKVIDEVPGFFSDDVEQEYTEEYIDKY-GYENVRGGMYTNS 123          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A6P1UTC8_9ENTR (GIY-YIG nuclease family protein n=1 Tax=Klebsiella michiganensis TaxID=1134687 RepID=A0A6P1UTC8_9ENTR)

HSP 1 Score: 59.3 bits (142), Expect = 1.140e-8
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   10 VYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINH-----TQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTKT 258
            +Y L L     YVG T N + RM +HFSG GA+WTQ N P+ + H     TQ  R  E  ++  +++   M   HG +KVRG  +T+T
Sbjct:   85 LYILALSNECFYVGLTANIKKRMEEHFSGRGAEWTQLNTPLRLMHAVNTGTQNAREAEMMESEATVI---MMLQHGINKVRGGYYTQT 169          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A6C0ASW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ASW7_9ZZZZ)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-7
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   10 VYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQVCRSNETAKAAESIVYRNMSKYHGKDKVRG 240
            +Y+L LEGG+ Y+GKTNN + R+  HF+ NG++WT+  KP+ I      + N      + I  + M KY G + VRG
Sbjct:    4 IYTLQLEGGKYYIGKTNNPQFRLESHFNSNGSEWTKLYKPIRILEL---KPNCDDYDEDKITRQYMDKY-GINNVRG 76          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A1M7KT22_9FIRM (GIY-YIG catalytic domain-containing protein n=1 Tax=Halanaerobium congolense TaxID=54121 RepID=A0A1M7KT22_9FIRM)

HSP 1 Score: 55.1 bits (131), Expect = 6.860e-7
Identity = 36/87 (41.38%), Postives = 45/87 (51.72%), Query Frame = 1
Query:    1 KPVVYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSIN--HTQVCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTK 255
            K  VY L LE G+ Y+G T N   RM  HFSG GAKWT++ KP+ I   +  V R  ET      +    M KY G   +RG  H +
Sbjct:  103 KGDVYVLKLEEGKYYIGYTENLAQRMESHFSGRGAKWTKEYKPLEIVKVYKGVNRKFET-----ELTELYMKKY-GYRIIRGGDHVR 183          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A6C0JC79_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JC79_9ZZZZ)

HSP 1 Score: 51.2 bits (121), Expect = 1.040e-5
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   10 VYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINH-TQVCRSNETAKAAESIVYRNMSKYHGKDKVRG 240
            +Y++ L+ G+ Y+GKTNN + R+  HF+ NG++WT+  KP+ +   T  C   +  K    I  + M KY G + VRG
Sbjct:    4 IYTIQLDKGKYYIGKTNNPQFRLKSHFNSNGSEWTKIYKPLKVLEITPNCDDYDEDK----ITIQYMDKY-GINNVRG 76          
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Match: A0A396C6P9_BACFG (GIY-YIG nuclease family protein n=4 Tax=Bacteroides TaxID=816 RepID=A0A396C6P9_BACFG)

HSP 1 Score: 51.6 bits (122), Expect = 1.310e-5
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   10 VYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQ--VCRSNETAKAAESIVYRNMSKYHGKDKVRG 240
            +Y+L LE G  YVGKT + + R N+HF+ NGA WT+ + P+S+   +  +  S E  +  E+     M K  G  KVRG
Sbjct:    7 IYTLALEDGFYYVGKTIDPDRRFNEHFNDNGAVWTKLHPPISVIEKESFLVSSPEEEERWENHQTIKMMKAKGWQKVRG 85          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig105.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A1V0SLS6_9VIRU2.120e-2758.14GIY-YIG domain-containing protein n=1 Tax=Klosneuv... [more]
A0A6C0CDR8_9ZZZZ1.220e-1242.86Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7S2HMZ1_9STRA4.550e-1248.81Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2E5R4A8_9PROT3.100e-1141.67CCHC-type domain-containing protein n=1 Tax=Pelagi... [more]
A0A2E4XLR3_9ACTN8.760e-1038.10Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6P1UTC8_9ENTR1.140e-839.77GIY-YIG nuclease family protein n=1 Tax=Klebsiella... [more]
A0A6C0ASW7_9ZZZZ1.150e-740.26Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A1M7KT22_9FIRM6.860e-741.38GIY-YIG catalytic domain-containing protein n=1 Ta... [more]
A0A6C0JC79_9ZZZZ1.040e-537.18Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A396C6P9_BACFG1.310e-539.24GIY-YIG nuclease family protein n=4 Tax=Bacteroide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig105contigEcto-sp6_S_contig105:341546..342367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348751.9136925-CDS-Ecto-sp6_S_contig105:341545..3416701682348751.9136925-CDS-Ecto-sp6_S_contig105:341545..341670Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 341546..341670 +
1682348751.923482-CDS-Ecto-sp6_S_contig105:342228..3423671682348751.923482-CDS-Ecto-sp6_S_contig105:342228..342367Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 342229..342367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig105.998.1prot_Ecto-sp6_S_contig105.998.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig105 341546..342367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig105.998.1

>prot_Ecto-sp6_S_contig105.998.1 ID=prot_Ecto-sp6_S_contig105.998.1|Name=mRNA_Ecto-sp6_S_contig105.998.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
KPVVYSLNLEGGRKYVGKTNNFEARMNQHFSGNGAKWTQQNKPVSINHTQ
VCRSNETAKAAESIVYRNMSKYHGKDKVRGAGHTKTT*
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mRNA from alignment at Ecto-sp6_S_contig105:341546..342367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig105.998.1 ID=mRNA_Ecto-sp6_S_contig105.998.1|Name=mRNA_Ecto-sp6_S_contig105.998.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=822bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:341546..342367+ (Ectocarpus species6 EcLAC_371)
AAGCCGGTGGTGTACTCGCTCAACCTCGAGGGTGGCAGGAAGTACGTCGG GAAGACGAACAACTTCGAGGCGCGCATGAACCAGCACTTCAGCGGCAACG GTGCCAAGTGGACCCAGCAGAACAAGTCAGTATCACTCCCCTTTGTTTCT GTTGGTATTTACATGTAAATAAGTATTTAGTCTACTGGTTTAGAGTCAAA GTATTCGCTTCGCTTGTTGTATAATGACGATTCGTCGTTAACCGGTGGAC TGCTTTACTCTCAACAGCTTCAAACATGTTCCCATCCTTGTACTATACCT ACCTATAGAACGAATCCATGAGGAAGACCATCGGCTTTCTACGTTTGCCG GGGGGGGTAAGAAGTGGTCTTGGTATTCTCGTGTGTGGCCGCATGTTTTC ACCAAAGATCCTTTGGTGCCCCTTTCCCTTTCTTTCCGGCATGGCTGTCC CGAGAACGAATCACCAAAAATACGAGGGCGGCAAGTGGTAGGAATGGCGC ACAGTCCCTAAGGAACAGTCTTGGGCGTATCTACTTTGATCCCTGTTTTC TGTCTCACCTCCTTGAGGTAAAAAATAATTCAAGATCGAGGCTAACGAAG CTATTGACGACTCCTATGACTTAACCGCTGCCCTATGACTCAACCTCTGC CTGCTTCCGTTTCGTAATACAAACGACTCGCAGGCCCGTCTCCATCAACC ACACGCAGGTGTGTCGCTCCAACGAGACTGCCAAGGCGGCGGAGTCCATC GTGTACCGCAACATGAGCAAGTACCACGGAAAGGACAAAGTGCGTGGCGC CGGCCACACCAAGACCACCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig105:341546..342367+

>mRNA_Ecto-sp6_S_contig105.998.1 ID=mRNA_Ecto-sp6_S_contig105.998.1|Name=mRNA_Ecto-sp6_S_contig105.998.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:341546..342367+ (Ectocarpus species6 EcLAC_371)
AAGCCGGTGGTGTACTCGCTCAACCTCGAGGGTGGCAGGAAGTACGTCGG
GAAGACGAACAACTTCGAGGCGCGCATGAACCAGCACTTCAGCGGCAACG
GTGCCAAGTGGACCCAGCAGAACAAGCCCGTCTCCATCAACCACACGCAG
GTGTGTCGCTCCAACGAGACTGCCAAGGCGGCGGAGTCCATCGTGTACCG
CAACATGAGCAAGTACCACGGAAAGGACAAAGTGCGTGGCGCCGGCCACA
CCAAGACCACCTAG
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