mRNA_Ecto-sp6_S_contig104.964.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig104.964.1
Unique NamemRNA_Ecto-sp6_S_contig104.964.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig104.964.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.020e-9
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = -3 
Query:  137 GVDFSE*L-EVP*SRLSRIDPRFVTPSPTPVPLSSVDLDDPAFVGRTGEQSIDDPDTLEKV 316
            GVD S  L E+  S  + +DPRFVTPSPTP PLSS  LDDPA V  T  QS+DD DT E+ 
Sbjct:  374 GVDSSGTLDELSCSSFACVDPRFVTPSPTPAPLSSECLDDPACVDGTRGQSVDDQDTQERA 434
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BLAST of mRNA_Ecto-sp6_S_contig104.964.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.400e-7
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  155 GVDFSE*L-EVP*SRLSRIDPRFVTPSPTPVPLSSVDLDDPAFVGRTGEQSIDDP 316
            GVD S  L E+  S  + IDP+FVTP+PTP PLSS  LDDPA V  T  QS+DDP
Sbjct:  225 GVDSSGTLDELSCSSFACIDPQFVTPAPTPAPLSSECLDDPACVDGTRGQSVDDP 279
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BLAST of mRNA_Ecto-sp6_S_contig104.964.1 vs. uniprot
Match: D8LEX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-6
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = -1 
Query:    1 NRIYLTCCRQDKGADEIHCYLLVMAYVFYV 90
            N  YLTCCR+D GADE+HCYLL+MAYVF V
Sbjct:  237 NLFYLTCCRKDAGADEVHCYLLLMAYVFAV 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJK5_9PHAE3.020e-959.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI2.400e-760.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEX5_ECTSI1.110e-676.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:503111..503429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size321
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348744.6908784-CDS-Ecto-sp6_S_contig104:503110..5034281682348744.6908784-CDS-Ecto-sp6_S_contig104:503110..503428Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig104 503111..503428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.964.1prot_Ecto-sp6_S_contig104.964.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig104 503111..503428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig104.964.1

>prot_Ecto-sp6_S_contig104.964.1 ID=prot_Ecto-sp6_S_contig104.964.1|Name=mRNA_Ecto-sp6_S_contig104.964.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=106bp
HIEHVSHHEQVAMDLIRSFILSATCKVDPVSTVAVPPCRRETFLVALFLA
CLGRRWTARRYDPQTRGRLGQPRRVGPESVMASRTAGQCATNVIREPQAT
QKSQPQ
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mRNA from alignment at Ecto-sp6_S_contig104:503111..503429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig104.964.1 ID=mRNA_Ecto-sp6_S_contig104.964.1|Name=mRNA_Ecto-sp6_S_contig104.964.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=319bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:503111..503429+ (Ectocarpus species6 EcLAC_371)
CACATAGAACACGTAAGCCATCACGAGCAGGTAGCAATGGATCTCATCCG
CTCCTTTATCTTGTCGGCAACATGTAAGGTAGATCCGGTTAGCACGGTGG
CAGTCCCTCCCTGTCGCCGAGAAACCTTCCTGGTGGCACTTTTTCTAGCG
TGTCTGGGTCGTCGATGGACTGCTCGCCGGTACGACCCACAAACGCGGGG
TCGTCTAGGTCAACCGAGGAGAGTGGGACCGGAGTCGGTGATGGCGTCAC
GAACCGCGGGTCAATGCGCGACAAACGTGATCAGGGAACCTCAAGCTACT
CAGAAAAGTCAACCCCAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig104:503111..503429+

>mRNA_Ecto-sp6_S_contig104.964.1 ID=mRNA_Ecto-sp6_S_contig104.964.1|Name=mRNA_Ecto-sp6_S_contig104.964.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig104:503111..503429+ (Ectocarpus species6 EcLAC_371)
CACATAGAACACGTAAGCCATCACGAGCAGGTAGCAATGGATCTCATCCG
CTCCTTTATCTTGTCGGCAACATGTAAGGTAGATCCGGTTAGCACGGTGG
CAGTCCCTCCCTGTCGCCGAGAAACCTTCCTGGTGGCACTTTTTCTAGCG
TGTCTGGGTCGTCGATGGACTGCTCGCCGGTACGACCCACAAACGCGGGG
TCGTCTAGGTCAACCGAGGAGAGTGGGACCGGAGTCGGTGATGGCGTCAC
GAACCGCGGGTCAATGCGCGACAAACGTGATCAGGGAACCTCAAGCTACT
CAGAAAAGTCAACCCCAA
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