mRNA_Ecto-sp6_S_contig103.929.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.929.1
Unique NamemRNA_Ecto-sp6_S_contig103.929.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: D7G0Y5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Y5_ECTSI)

HSP 1 Score: 512 bits (1318), Expect = 3.290e-177
Identity = 262/265 (98.87%), Postives = 264/265 (99.62%), Query Frame = 1
Query:    1 MRWAVAFLPLCLVTASGFMMRTCPAGRSCRMADQSQHDGVERARPAPSSSPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            MRWAVAFLPLCLVTASGFMM+TCP GRSCRMADQSQHDGVERA+PAPSSSPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML
Sbjct:    1 MRWAVAFLPLCLVTASGFMMQTCP-GRSCRMADQSQHDGVERAQPAPSSSPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A835YNC6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC6_9STRA)

HSP 1 Score: 183 bits (465), Expect = 8.880e-51
Identity = 94/183 (51.37%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  283 EPEVTQRAFMDITIGDSPSGR----------LVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGK--SGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            EPEVT RA M +++   P+G           +VI LYGK VP+TV NF AL+ G    G SY+GT  Y+V+ GLN+Q GA+G  SGK  +G+S+  E    ENF+++H  EG++SMVR  D + DSRFFI+IK DAGWAD RYVAFGR+ EG+D +  I+++KV+  +N+P KPVVIE+C ML
Sbjct:    2 EPEVTSRALMRLSVDGKPAGNTAASCPGAGTIVIGLYGKTVPETVANFEALVMGDTDGGYSYKGTTFYKVVQGLNMQAGAVGDFSGKGLTGLSAKKEPFGPENFEVRHGAEGMVSMVRGPDTKNDSRFFITIKPDAGWADGRYVAFGRVLEGLDALRGIDQLKVQTPSNRPLKPVVIEECVML 184          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A6V1WNP3_HETAK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WNP3_HETAK)

HSP 1 Score: 164 bits (416), Expect = 3.150e-43
Identity = 93/216 (43.06%), Postives = 132/216 (61.11%), Query Frame = 1
Query:  154 LSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIP--QENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            LSR+ F+  +AAAI   +G  +  +         AD+I     + +VT + F D++I   P+GR+VI+L+G+  P T  NF AL+ G+   G  Y+G  AYRV+   ++Q+G+IG ++G+SG SS     P   ENF+I H   GL+SM R  D + DSRFFI  + DAGWAD +YVAFG++ EG  VV  IE++K +   N P K VVIE CG+L
Sbjct:   25 LSREHFIASSAAAI---LGCSQIASPFPSF----ADQIIFAEDKYKVTSKCFFDLSIEGKPAGRIVISLFGEEAPQTCANFRALVEGR--PGYGYRGERAYRVIQDFSVQIGSIGDKTGRSGKSSFDGGAPFGPENFNIPHTDAGLVSMARGLDGKTDSRFFIQTQGDAGWADGKYVAFGKVTEGFTVVQEIEKLKTQPPQNNPTKKVVIEDCGVL 231          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A6V2NXR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXR4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.310e-41
Identity = 83/170 (48.82%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  286 PEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            P VT+R ++D+ IGD   GRL I L+G+++P TV NF  L +       SY GT  YRVL    IQ GAIG  +GK+G S+ G +   +N+ + H K+GL+SMVR+     DSRFFI+  DDAGWADD+Y AFG + +GMD V  IE+V V    N PK PV I  CG+L
Sbjct:   66 PVVTKRVYLDVQIGDKEPGRLTIGLFGELMPKTVDNFEQLCSTN-----SYAGTTFYRVLSDFTIQGGAIGDPTGKTGKSAFGSSFEPDNYRLMHTKKGLVSMVRSLSGGVDSRFFINCNDDAGWADDKYAAFGIVEDGMDYVKKIEKVSVSPPKNSPKTPVTIIGCGVL 230          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A7S4MQY5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQY5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.580e-41
Identity = 95/214 (44.39%), Postives = 125/214 (58.41%), Query Frame = 1
Query:  154 LSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            LSR+A +  A A   +V+G G   A    I+  V          P +T+R F+D+ IGD   GR+VI LYG+++P T +NF  L  G      SY GT  YR L    I  GAI   SG SG S+ G     +N+++KH K GL+SMV++     DSRFFI+IKDDAGWADDRY AFG + EGMD+V  IE+V V    N PK  + I++ G+L
Sbjct:   80 LSRRAAVQSALAPAFVVMG-GAGPAQASYIDPTV--------DVPTITKRVFLDVKIGDEEPGRIVIGLYGELMPKTSENFEKLCEGN-----SYGGTTFYRALSEFQISGGAIDDPSGNSGKSAFGAPFEPDNYNLKHTKAGLVSMVKDKSGGADSRFFITIKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVSRPKNTPKVAISIQRSGLL 279          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A7R9W6P2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6P2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.850e-40
Identity = 88/186 (47.31%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  256 ADKIAAGWQEPEVTQRAFMDITIGDSPS------GRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            A  I      P VT+R ++D+ IGD  +      GRLVI LYG+++P T +NF  L  G       Y GT  YRVL  L I  GAIG   G SG S+ G +   +NF++KH K GL+SMVR+     DSRFFI++KDDAGWADDRY AFG + EGMD+V  IE+V V    N PK  V I   G +
Sbjct:    6 ASYIDPALDAPRVTKRVYLDVMIGDDEAAEAEGAGRLVIGLYGELMPKTAENFERLCEGNG-----YAGTTFYRVLSDLQISGGAIGDPKGDSGKSAFGSSFEPDNFNLKHTKAGLVSMVRDKTGGVDSRFFINLKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVARPKNTPKVAVRITGSGFV 186          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: B8C839_THAPS (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C839_THAPS)

HSP 1 Score: 148 bits (373), Expect = 7.650e-38
Identity = 85/180 (47.22%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  286 PEVTQRAFMDITIGDSPSG-RLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRS--GKSGVSSTGENIP--QENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAE-----GMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            P++TQ+ ++DI +  + +  RLVI L+G+ +  T +NF  L T  N  G SY GT  YRV+ G  IQ GAIGS S  GKSG S+     P   +N++IKH  +GL+S VRNA+   DSRFFI  +DDAGWADDRY AFG + E     GM++V  + R++V+   N PK PV+I  CG+L
Sbjct:    1 PKITQKVYLDIKLPTNKTPKRLVIGLFGEAMHKTAENFQTLCT--NTEGPSYAGTSFYRVISGTTIQGGAIGSNSSSGKSGTSAFENGAPFTPDNYNIKHRTKGLVSAVRNANGTIDSRFFIQTEDDAGWADDRYAAFGIVLEEEGTGGMELVKKLSRLEVKAPQNSPKDPVLIVGCGLL 178          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A1E7FCA1_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCA1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.340e-36
Identity = 81/170 (47.65%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  286 PEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSS--TGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCG 789
            P++T+R ++D+  G +  GRLVI LYG ++P T +NF  L      A  SY GT  YRV+    IQ GAIG  SGK+G SS   G++   +NF+IKH K G+LSMV+      DSRFFI+ ++DAGWADDRY AFG + EGM +V  IE+V V    N P   V I   G
Sbjct:    3 PKITKRVYLDVEFGKNEKGRLVIGLYGDIMPKTAENFEKL-----CASNSYAGTNFYRVISDTTIQGGAIGDPSGKTGKSSFDDGKSFEPDNFNIKHSKSGILSMVKGIGGV-DSRFFINTQEDAGWADDRYAAFGIVEEGMYLVKQIEKVPVSPPKNSPVNEVKILASG 166          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A7S2H9L4_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9L4_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.830e-36
Identity = 76/151 (50.33%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  286 PEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKV 738
            P VT+R ++D+ IGD   GRLVI L+G+++P TV+NF  L +       SY GT  YRVL    IQ GAIG  SGK+G S+ G     +NF + H K+GL+SMVR+     DSRFFI+  DD GWADD++ AFG + EGMD V  IE+V V
Sbjct:   83 PVVTKRVYLDVQIGDKEPGRLVIGLFGELMPKTVENFEQLCSSN-----SYAGTTFYRVLSDFTIQGGAIGDSSGKTGKSAFGSPFEPDNFRLMHTKKGLVSMVRDRSGGVDSRFFINCNDDGGWADDKFAAFGIVEEGMDYVKKIEKVSV 228          
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Match: A0A7S1T924_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T924_9RHOD)

HSP 1 Score: 155 bits (391), Expect = 6.680e-36
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  259 DKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 795
            DK +    EP +TQ+ F+DI+I      RLV+ LYG+VVP T +NFV+L  G  + GVSY+G++ YRV+ GL IQ G IG    + G SS G    +ENF I H  EG++SMV   D   DSRFF +   D+G+ DD+Y AFGRI  G D +H ++ + V G  N+P+  V I  CG+L
Sbjct:  640 DKFSLRASEPRITQQCFLDISIAGMSPERLVVGLYGEVVPKTTQNFVSLCEG--STGVSYRGSQVYRVVHGLTIQAGNIGPDGTEDGQSSFGLPFERENFKIMHDVEGVISMVNRKDGLNDSRFFFTTVSDSGYLDDKYCAFGRIIWGRDFLHKLDLLPVIGPKNRPRDDVRIVNCGIL 816          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y5_ECTSI3.290e-17798.87Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835YNC6_9STRA8.880e-5151.37Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A6V1WNP3_HETAK3.150e-4343.06Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hetero... [more]
A0A6V2NXR4_9STRA2.310e-4148.82Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylu... [more]
A0A7S4MQY5_9STRA4.580e-4144.39Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odonte... [more]
A0A7R9W6P2_9STRA2.850e-4047.31Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudi... [more]
B8C839_THAPS7.650e-3847.22Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A1E7FCA1_9STRA1.340e-3647.65Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S2H9L4_9STRA1.830e-3650.33Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S1T924_9RHOD6.680e-3645.81Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:620506..629366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score515.0
Seed ortholog evalue2.1e-143
Seed eggNOG ortholog2880.D7G0Y5
Model size1901
KEGG koko:K01262,ko:K03768
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0880@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-23_001830.1
EC3.4.11.9,5.2.1.8
Cds size798
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.929.1prot_Ecto-sp6_S_contig103.929.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 620506..628263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348744.45022-CDS-Ecto-sp6_S_contig103:620505..6206201682348744.45022-CDS-Ecto-sp6_S_contig103:620505..620620Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 620506..620620 +
1682348744.4594233-CDS-Ecto-sp6_S_contig103:623271..6235131682348744.4594233-CDS-Ecto-sp6_S_contig103:623271..623513Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 623272..623513 +
1682348744.4667666-CDS-Ecto-sp6_S_contig103:624178..6243041682348744.4667666-CDS-Ecto-sp6_S_contig103:624178..624304Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 624179..624304 +
1682348744.4755013-CDS-Ecto-sp6_S_contig103:626974..6270581682348744.4755013-CDS-Ecto-sp6_S_contig103:626974..627058Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 626975..627058 +
1682348744.4852185-CDS-Ecto-sp6_S_contig103:627434..6274931682348744.4852185-CDS-Ecto-sp6_S_contig103:627434..627493Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 627435..627493 +
1682348744.4941595-CDS-Ecto-sp6_S_contig103:628091..6282631682348744.4941595-CDS-Ecto-sp6_S_contig103:628091..628263Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 628092..628263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348744.5039027-UTR-Ecto-sp6_S_contig103:628263..6293661682348744.5039027-UTR-Ecto-sp6_S_contig103:628263..629366Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 628264..629366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.929.1

>prot_Ecto-sp6_S_contig103.929.1 ID=prot_Ecto-sp6_S_contig103.929.1|Name=mRNA_Ecto-sp6_S_contig103.929.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=266bp
MRWAVAFLPLCLVTASGFMMRTCPAGRSCRMADQSQHDGVERARPAPSSS
PLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQ
RAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTE
AYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVR
NADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGT
NKPKKPVVIEKCGML*
back to top

mRNA from alignment at Ecto-sp6_S_contig103:620506..629366+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.929.1 ID=mRNA_Ecto-sp6_S_contig103.929.1|Name=mRNA_Ecto-sp6_S_contig103.929.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8861bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:620506..629366+ (Ectocarpus species6 EcLAC_371)
ATGAGGTGGGCGGTGGCATTTCTCCCGCTGTGCCTCGTGACGGCGTCGGG GTTCATGATGCGAACATGTCCGGCGGGCAGGAGCTGTAGGATGGCAGACC AGTCTCAGCATGACGGTGAGAGAGAGGGAGAGAGAAGGGGGGTGTGTGGA TAGGAGGTATTGTCAGTGCCGATGTTTCTGTATGGCTAGGTTGTGCTACG CTGGTGCCTGTGCTATCCAATCACCTCTCTACAGCAGCAGGTTGTCGTGA CGTTTGGAGACGATCGTACCGCTTCATGATCATGCAACGTCAAGTTGACC GCACAACAGGTTACATAGCAAAGTGAGGTCTTATTCTAACTAAATAAATC CTGGTCTAAGTTGGAAGCGACGCGCTGCAAAGCTCGTTGTTAGTATACTA GATCGACTTCATAAGTCGCGAGGGAAGGGATTGCTGTACCCTTCTCGCGA TAAAAATATCTCAGGCAGGAACCGCAGGAGGAGGTCCAACACCCCCTCCT ATTTGACCCCGGTTGAATCGTCTACCTATTGTAGTAGAAGTAGAGGATGG GGGCCAGAGGGGCAGACGACAGAGTCCAATGATGGGAGAAAGTAAATAAA TAAAATAGTACAGTAGGGGCCACGGTCCTGGAGTACGATGCGAGTGCCAA CCCGCTGTCATCGCTGAAGCTCTGCTTTCTATCGCTGCCGCGACCTTCGA CCTCTAGCTTGGCGCCATGGAGGCAATGCGGCATTGCCTCCATGGCGGCA TTGCCTCCATGGCGCCAAGGTACATGTTGAGATCGAAGGTCGCGGCTGCC ATACAAAGCAGCGCCTCCGCGACGACACTCTCATCGTACTCCAGGGCCGT GACCCAGTACTGTACTCTGTATCCTGCCGTTCATCCAATTGTGTGTGCCA TGCGGGTGTCTTGTGTCTGAATTGTGTTCTCAGGTGTGAACGGGACACGC AGCAGCCATCCCATATCGAGATGATTGACGAACGTATCGACCCTAGTCGT GCAGTACACGTAGGCCTTTCTCGTAGACCTACTCGACCTTTATCACCTTA TGCCCCCCCCCGCCCTGGTCCGTCTCGAAAGGGACGCGTGGTCAATGGTC AAATGACTACGGCAAGCAACAAATGAGTACGCCTCCCCCCTCCCCCCTCC GCCCTGGTCCGGTGAGCACCCGGCGTGCTCCGTCCCGGCTTTGAAGGGAT GCGAGGTCAATGGTCGTACGACTACGGCATGCACGACTAGGCGGGGGGGG CGATGTTTCACCCTTGTTTATTAATCGAGAGAGTTGCCGTATTGCTGCAG CTGTCTCCTGTTTTTGCTGGGGTGATCGAGATACGCATACCATCTGTAGC AAAATAGCGCGGCCGCTCGGATAGATGAGGCTAGACGGGACATGTCTGTG CATAAACACCTACGACCTAAAGCAAACTATAAACATGCTACTTTGCGGTT TGTGCCCTGGGCTCAATAGGTCGTGTGTCAGGAATGTTTTGGCGCTGAGG CTACGAAGTTCCTCCACTCCGCTGCCTGCTGCTGCTCTGCCTCTGCGTGA TGCTGCTGCCGCTTCCTTTTCATGTTGCAACCATGACCATGTGTGTGCAT GCCAGCTTGATGCATCGAGTAGATGGCAAGCTCGATTTTAGAGTTCTGTG GGGGCGCCTCCGAGTTGAGACACACCGCTGCTGCGGCTGCATGAGTCTGT GTGCCTAAATCTGATCTTGTTGCCGTTGCTATACCGCTGCATCCTCTAAC TATGTATCTGCTTCAGTGCGCCAAACGGCCGTCCCTCGTACATTTTTTAT TGAAATTGAAACTCGCCGTGCACATTGGACAGCCTCGTCTCAAAGGCACG AACCCCACACATCGGTGCTGCCCCGACCGGACAGCGTCAGACCCCCATAC CCCCGGCACTGCTGTACGCTCTCCGGTTGGTCTCTGGTTCTGCGCTGGGA AGGATTCCGAAATAAGCCGTTGTACTCTGTGTGCATGTACGTGCGCTTGT TGTTGTTTTCCTACTTTTCGAAGGTCTATTCGAACTGTTGGCCTCCATCA GCCCATGGCAGATCCGCAATTGAGTCAGTCACATAAGCCTTAAATAACGA TCCGCAACCTACAGTAGTCCCTACTGTTGCAACCATTTTCACCAACAACA GTACTACGCGTGAGGTTATGGCAGCAGACTGCTATGCTATGGAGTATGAG TTCGATCAGTTTCAGGTACTCAAGCGTGGTTGTATAAGGGTTTCCCAGGG TGTCCCTCTGCCGTCATGTGAGGCATGATATGAGGCGACCTCGACGCCTG CTCGGACTTCGAGAGAGAGAGAGGGGGGGAGAGACAGACAGAGAGACAGG GAGACCGAGAAATAGAGAGACAGAGACAGAGACACAGAGAAAGCCAAAGG GAAAGAGAAAGACAGAGAGAGAGAGATCATGTTGGTATTTCTATCGTAGC GCGCCCCATGCCCAGCCGCCTGCGTAGAATATGCATCACGATTGAGTTAT TGTCTCACAATCCAGCAGGGCGCTGTCGGTTCTTCAATCGTGTTCACGTT ATCAATGCTGTCATCCACTCGTTCTCACGCCGCTCGGCCGGGTAGGCGAG TTTTTTCCCAAGCCGCCGAAAGCGACAAGTTTTCCCGTAATTTCCTGAAC ATGGAAGCAGTTCGTGACAACACCGTTTGACCTCCAACCACGTTTCAATC CTAAGCTTCCCTCGTCGTGTTGCTCGTCGTGACGATTTGATCCGCCGCCG CATGCATCCTGACCAGGTGTTGAACGCGCCCGACCAGCACCGTCATCCTC CCCGCTCTCGCGGCAAGCTTTCCTCGGGGGCGCCGCGGCTGCGATTCCGC TCGTCGTGGGGGTCGGCCGAGCCGTGGCGGACAACGAGATCATCGAGAAG ATGGTCGCCGACAAGATCGCCGCGGGGTGGCAGGAGCCGGAGGTTACCCA GAGGGCCTTCATGGACATTACCATTGGGGACAGCCCGTCCGGGAGGCTGG TGATCAACGTGAGAGCGAGCCTGATGAGACTAACCTAAACAGTCATACCG CAGCCTATTTTTGTTTTCGTACAAGGGCTCAGGACGAGAGGGGCTACCGC CCCCCCCCCCCGTCCTTCGTTTGCTCCGCCGCTCTCCGTGTAAGGGTGGA CAGATTTTTTGTTTGTTCCGCCCATCGTGCCGTCTCTTGATTCGCTTGGC GCCGGCGCGAATCCCACATCAAGGTATATATATGCCTGCGTGAAGAACGC TCGCTGTGGTTCCAGCTTACGCTAGCACGCCTTTTTCTTGCATGTGGAAT CACCTTTTCTTGAGTCACTCTGTGTCTGTACGTTTCGTACGCGCGGCAGA TTGCAAGGGTGCAGAGTCTTGATGTCCCTCTTGGGGTGGGAATCTGGAAC ACGGAGCGTTTCCTTTTTGAAGTCTGAGGAGGTGCCGAGAGCACGACCAC TTGCTCGAGTGCATGAAACGTGCCCAGAGATATTCCCCGAAAAACAAAAT CCCGAACAGCGTTTGCACATATATGCCATACGAGTTTCGCTCGGGCCCTG CATAGAATCCCCCCGATAACATCACGTGTTTTTTTAGAGTCGCCGAGTGC GAACGACGAACACCATCGTCTACCCTTCACCCTCGCTTCTCGCGACACGT TCGCCTCTTTATCTTCCCCCCAGCTCTACGGGAAGGTTGTGCCCGACACG GTGAAGAACTTCGTTGCCCTCATCACCGGGAAAAACGCCGCCGGGGTTTC GTACCAGGGGACGGAGGCGTACCGCGTGCTCGACGGCCTAAACATTCAGG TTTGACGGGGGGGGTTGGCGTACCCTTGATGAGCGCATGCCATTGTCGAT AGGCCATTGACCTCGAATTCGCCGGGACGGAGCGATATGCCCGGTTTCGC CGGCCCGGATTTCGTTTAACAAGGATACAAGGATGGACCACAAACCGGTC ATCCTCCTTGCGTTTGCTGTGCCAATCCAGATACTCCATGGGTTGATTGG GGGCATCCCGGCTAATGAATCGTTTCACAACAGTAGTGGGCAGGCACGAC TATGTATCAAGCACAAGGTTTGCAGGGGGGGTGAGGGGGGGTCTAGGGGA CCACGCAGAATGTACTTGGCTTGGCGTGTGGGGGTTATGTTTGCGTGTGG CTCCAGCCCTCGGTGCTGATAGGATGGGGCGCTGACCATCAATCTGTTGC AGTGGTTTGGCTCGACGTTTTTTGCGACTCTGAGGGCAGTTGGAGGTGCT CCAGTTTCCTTAGGCACCACGGATGCGCTGGAGTCAACGGACTAACCGTT CGAGACAATACCATTGCAGTGAATGGAGTTCGTGGGAATCTCTGTTTACA TTAACTTTGAAGTCAGCACTACTCATATTCAAGAGGAGGCAAAGGAGATG TCGTCGATGTTCCACGTGGAGTCGGCATACCAACAAGCGGACCTCACGAA GGCACTTTGTGAGAGGTTTTTGAGTTTCATCTTAACTTTGTAGGGAGGAA GGGATAAGACTCTTAGATTATGGTTTATTTATGTGTGATCAAACAACTGG CGAGGAATGTTACATATTCACCCATGGGTTTTTCGATGAAGGTGTGCTAG GCTGGGGAGCAGTTCCATCGCTAAGGTTTCGAAGAACTGGGGGGATGGGA ATTGATTTCTAGCTAAACAGGCTATTTTGACAGTTTTGAAAGTTGAGTTT CTGAGTTCATGTTCTTGTGTTTTCGAGTTCCTATGAGGTCATGATGATAT GGCAGGTCACAAGCAGCGGGGTTGATTGAAATACTTGTAGCAATGCCAAG TGGATGGTACGGAATGTTCCCATGGAATGAGGTAGAGCGGGACACCGGGT AATTGTGTGGTACGTGGAATGGATTTCTCACAGTGTGCTAGGTACCCTGT TGTGTTTGGCGTCGCCCCCTCATTGGGTCATGGGTGTGAGAGTTGAGACG AGATTAATCACAACGCGTTTTTTTCTCGGCGCGAGCCCGCCGAGTTGCTG GCACCCTATTCAACACGTCTATGTGACAAGCTACCCCAAGTTCGGGTCAT CCTAATGCGACATTTAGCGTAATATCATGCAGGACCCCGAGGTTAGGCTA GCAATGAACGGATTCGGCCAAAAGGCACGGCGATGGAGCAGCTGGATGCG CTCTCAGAAGAGCAGCGTCAGGCAATCGATGCGCATATCAAAGCAGAGGC GGAAAAGCAGGTAGGGAAAGGAATGAAAAATGATATGATGAAGAAGCAGC AGAGCGACCGCGTCACAGCTTTGAGTGACGCGGGACGCTCTGCTGCTTCT TCGTCATAGCTGTTTGTTCCTTCCCCCTTACTTTTCCACCTCTGCTTTGA TATGCGCATCGACTGCCTGACGCTGCTCTTCTGAGAGCGCATCTAGCTGC TCCATCGCCGAGCCTCTTGGCCGAACCCTTTTCATTGCTAGCCTATCCTC GGGATCCCGAATGACATCACGCTATTTAGCGCGTTTGGATGATCCGAACT GGGAGTAGCTTGTCACATAGACATGTGTTGGATAAGTTGCGGGCAACTCG GCGGACTCGCGCTGCGAAAAAAACTTTGTTGTGATTATTCTCGTCTCAAC TCTCACACACATGACCCAATGAGGGGACGACGCCAAATATAACAGGGGCC TAGCACACCTTGGATATCCATTCCACGTACCACACGAATGACCCAGTATT CCGCTCTACCTCATTGCATGGTGGGAAAATTCTGCCATCCACTTGGCATT GCTTTGGCATTGCTTTGGCATTGCTACAAGTAAATGGTACCAATCATCGC CAACGAAGGACCGCCCGCCTGAACGAGGACATGAGGACCGAGGGTGTGTG TGTTGTTATGGTGTAGTGACAACGCGAAAGGCCCGAACCAATTAGAGTTG TGCCGACTCTAGGGAGCAGTGTAGGGTGTCGCGTACCGCAGGTTGCATGA AATATCGCATCCCCTGGACCGATTTTCGAAGCTCGATATCTCGGCAGGAA AAGCAGTGGCGGTACCGAAAATGGCGGCGTTGGAACCGTCTCGACGACAT CTTTCCGAAAACGTATACCTCAATTTCGGCATCCTATTGATCATGGAGTA ATCGAGCTTTGAAAATCGGTCCAGGGGGTGTGATATCTTATACAACCTTT GGTACTTCCTTTTCCACTCTGGTCCATGCTGTGTGCAGTCGCTGCAGGCT TGAAAGGAGGAAGGTAAAGGTTCACATATAGGTATTTAGTGACAACACGG CAGTATGTGATGTTGTGCAAGGGTGGGACGAAGTCACACAAACATCCACA CAGCCGTCGTGTGTAGGAGCTGCTGCAGGTCGTAGGAGCTGCTACAGGCA GCATGTAGTGCAGGTACTCCGGTCAATCCACGAGTCGACGGCCGATCTGA TACACGTCTCGCCGACCGTCGGATTTTACTCTTTTGTCCCCAACTTCTCT ACCCGCCAATCGTGCTCAGATGGGGGCGATCGGAAGCAGAAGCGGCAAGT CGGGCGTGTCGTCGACGGGAGAAAACATCCCGCAGGAAAACTTCGACATC AAGGTAAGAAGACCGCTCACACTTCAGTCGGCGATTGCACTAACTTGGCG GGGCCGAATTACCCGTGGCTTTTCGTGCGTGAACAACGGCAGGACGCTGC TCGACTTTCCCTGCGGCGTGAGCTTTGTTGTGCCTCAAGAATGGCCTGCC TCTGGTCTTCCGCATGGGTTGTGTGGTTCCAGTTGGCACCCGCCGTGCCC CCAGCCTTGGCGTTACTCAGGCGAAGATCCCGTTCGGCCTTGTCCCAATA CAGAGCCAATGGTGACATCAGTTAGTATGCTCTCGTGTTTTTTTTCCTCT GCCTACTCATGTCTCGCGTTTCGACGCCATCTCCTCCCTGTGTGCGCGTT CTCCCTTGCGCCGTGGCGGCCTTGAGCAGCACATGAAGGAAGGGCTGCTG AGCATGGTCAGGAACGCGGACGCGCAGGGGGACAGCCGGTGAGCAAACGA CCGTTCTGAACCCTGCGTTGCCAAACACGGGTCCTTTAGCTTTGTTGTTG TTGTTGTTGTTGTAGTTGTCTTCACAATAAAAACCGTTCCGTTTTCTCTG CTCAGTACCTTATTCTGTCCGTACTAGTCTAGCACTTGACGCGGTCAATT CCCGTGGTCACAGGCTAACTTACCCAAAAAAAGGTATACGAAAATAAAGT GGACCCAAAGGGTTCCGCAAGTCAATAGAAATCAACGACAGATAGTCTAG GACATTCATTGCTTCCCCGTAAAGGCAGTCACTGCCCTGAGGGTCTCGCT CGCTCAACTGCAGCTGACTGAGTTACAAGGTTATTCTCAACCCATGTATT CTTCTGCCAACATGGCTCGGTTTCACGTACCACCAGCATCAGCCTCCTTC TGACCTCTTGGACCAGCATCCGGGCAGTGGCAGAATCAGGAGAATAAATT ACAAGGCGGGGAGAGAGATATTGCGGATAAGAGTGCTGACGTTAGCTTTC GCACGCAAGTAGTGTCGTTTTTTGCTCGACTTCCAGCTGCTTGCGAACTC TTGCGCGCGTGTGTGTCTTTCCCCGCACCCCACCAGATTCTTCATCTCCA TCAAGGATGACGCGGGGTGGGCGGATGACCGCTACGTGGCCTTCGGGCGA ATTGCCGAGGGGATGGACGTGGTGCACCTGATAGAGCGCGTCAAGGTGGA AGGGGGCACAAACAAGCCCAAGAAGCCGGTGGTAATAGAAAAGTGCGGTA TGCTTTAGAAGGCTGTTTGTAGGTTGTTCTGAGACGAACTTCGAGGTTCG TATCGGGCCGTGTTTGTACAGAGGATTCCGGCATTGCTGCTGCAGGTGCT GGTCGCTAGCCATGGGTGCTGAACAATTCTGCCGTGCAGTTGTAATTACA GGCGACTCGGTGAGACCCCGAGAAACCAGTGGTCGACGACAGTGCAGCTG GCTCTGGGCCGGACCACCATGATGGCGAAGCCGATTGCCACGAGGTTGCT GTAAGCGCTCTCCGTTACGGTTCAGGGCTAGATCCGACCTTGTTCGTGCA CCGTAGACCATGGAGCCCCCCCCCGCACGCTATTGCAGGCGGCGCAAATA GTTCCAACACATTTTCTGAGTCGATTGGTTGGTGTTGAAGAGAAAATATT TCACGTTGATGGCTTCCGCGTTGGGGCTAAGAAACCGAAAGCAGGCTTGC GTGAGGAGTCGGCAATTTTGGGCTCACGAAGTTGGTGGGGTCGCTCCTGC AGTGGCCCGTTCCCTCTTTCCTCGGTTGCGTTGTATGTGGGAGGCGCTCT TGGTGGCCAGTCGCGGTCTAGGTTCGTGACAAGCTGCCAGACATACTGCG GGAGCAAGACGTTGGTACACCTTAGTGACCCTGCAACCCATGCCGCAGCG CTCAAGTTCAGCGATTCTCCTCCCGCCGAGAACGCCTAGTTGGTTGTTTC TGCGTGCGTGGTCTCCGCACGTGGCGAACGTTATTACAGGAGTATGTTGC ATAAGATATCACACCCCATGGACCGATTTTCAAAGCTCGAGTACTCCACG ACGAAGAGGATACCGAAATGGAAGTATACGGTTTTGGAAAACTCTCGACG AGAAGGTCCCAACGCCGCCGCCATTGTCGGCACCGTCGCTGCTTTTCCTG CCGAGATGTCGAGCTTCGAAAATTGGTCCAGGGGGTGTGATATCTTCTGC AACCTACGGTCGTCTGCCACGCACCCGGTTCCACGGGAAGACGAGGACAC CAAGTTGCCGAGGTTAAGGTTGTGGGCATGCTGAGAAGGATCCCTGTGTG TTGCTATAGATTAGATGGCAAGTTCCTTGTTGAATTTGTTCTTTTTTATT CATTCCCCGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:620506..629366+

>mRNA_Ecto-sp6_S_contig103.929.1 ID=mRNA_Ecto-sp6_S_contig103.929.1|Name=mRNA_Ecto-sp6_S_contig103.929.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:620506..629366+ (Ectocarpus species6 EcLAC_371)
ATGAGGTGGGCGGTGGCATTTCTCCCGCTGTGCCTCGTGACGGCGTCGGG
GTTCATGATGCGAACATGTCCGGCGGGCAGGAGCTGTAGGATGGCAGACC
AGTCTCAGCATGACGGTGTTGAACGCGCCCGACCAGCACCGTCATCCTCC
CCGCTCTCGCGGCAAGCTTTCCTCGGGGGCGCCGCGGCTGCGATTCCGCT
CGTCGTGGGGGTCGGCCGAGCCGTGGCGGACAACGAGATCATCGAGAAGA
TGGTCGCCGACAAGATCGCCGCGGGGTGGCAGGAGCCGGAGGTTACCCAG
AGGGCCTTCATGGACATTACCATTGGGGACAGCCCGTCCGGGAGGCTGGT
GATCAACCTCTACGGGAAGGTTGTGCCCGACACGGTGAAGAACTTCGTTG
CCCTCATCACCGGGAAAAACGCCGCCGGGGTTTCGTACCAGGGGACGGAG
GCGTACCGCGTGCTCGACGGCCTAAACATTCAGATGGGGGCGATCGGAAG
CAGAAGCGGCAAGTCGGGCGTGTCGTCGACGGGAGAAAACATCCCGCAGG
AAAACTTCGACATCAAGCACATGAAGGAAGGGCTGCTGAGCATGGTCAGG
AACGCGGACGCGCAGGGGGACAGCCGATTCTTCATCTCCATCAAGGATGA
CGCGGGGTGGGCGGATGACCGCTACGTGGCCTTCGGGCGAATTGCCGAGG
GGATGGACGTGGTGCACCTGATAGAGCGCGTCAAGGTGGAAGGGGGCACA
AACAAGCCCAAGAAGCCGGTGGTAATAGAAAAGTGCGGTATGCTTTAG
back to top