mRNA_Ecto-sp6_S_contig103.926.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig103.926.1
Unique Name	mRNA_Ecto-sp6_S_contig103.926.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: A0A6H5JP53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP53_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.590e-74
Identity = 125/183 (68.31%), Postives = 139/183 (75.96%), Query Frame = 1

Query:   43 MLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE---------EVLSRQWR*SFDSASCCTG*STWRYFCWSRMTILGHGTTTRRMCGKGWRRTGGMWCPTSTTTGTSGCQPARG 564
            MLD +LHPSSPDTSGIPV  E+L+KV EWVSK+EDPI GELLPDASQTA+E++AKG+FKDKFTAALLNGIEPEDGGGVGTPFES G GDCLLNSVAAFFAK+         + ++ + R S        G      F   +  I GHGTTTRRMCGKGWRRTGGMW PT TTTGTSG Q ARG
Sbjct:    1 MLDFVLHPSSPDTSGIPVGGEKLRKVMEWVSKREDPIVGELLPDASQTAEEVVAKGLFKDKFTAALLNGIEPEDGGGVGTPFESDGKGDCLLNSVAAFFAKDGGQGVRSAVKTIAVKLRLSV----VLFGLIYMGLFLLEQDDISGHGTTTRRMCGKGWRRTGGMWHPTPTTTGTSGRQNARG 179

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: D7FZ28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ28_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.180e-67
Identity = 108/116 (93.10%), Postives = 111/116 (95.69%), Query Frame = 1

Query:    1 MANSQPQALAKVRGMLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            MANSQ QALAKVRGMLD +LHPSSPDTSGIPVEDERLQKV EWVSKQEDPIDGELLPDASQTAKELLAKG+FKD FTAALLNGIEPEDGGGVGTPFES+GNGDCLLNSVAA FAKE
Sbjct:    1 MANSQLQALAKVRGMLDFVLHPSSPDTSGIPVEDERLQKVMEWVSKQEDPIDGELLPDASQTAKELLAKGLFKDNFTAALLNGIEPEDGGGVGTPFESEGNGDCLLNSVAALFAKE 116

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: A0A6H5KLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL4_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.800e-62
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 1

Query:    1 MANSQPQALAKVRGMLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            M++SQ QALAKVRGMLD +LHPSSPDTSGIPV DE+L+KV EWVSK EDPIDGELLP ASQTA+EL+AKG+FKDKFTAALLNGIEPEDGGGVGTPFES GNGDCLLNSVAAFFAK+
Sbjct:    1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVSKWEDPIDGELLPGASQTAEELVAKGLFKDKFTAALLNGIEPEDGGGVGTPFESDGNGDCLLNSVAAFFAKD 116

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: D7G3L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L3_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 5.210e-59
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1

Query:   43 MLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            MLD +LHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKG+FK KFTAALLNGIEPEDGGGVGTPFE +GNGD LLNSVAAFFAKE
Sbjct:    1 MLDFVLHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKVKFTAALLNGIEPEDGGGVGTPFEREGNGDYLLNSVAAFFAKE 102

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: D7G0J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J6_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.260e-58
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1

Query:   43 MLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            MLD +LHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKG+FK KFTAALLNGIEPED GGVGTPFES+GNGDCLLNSVA FFAKE
Sbjct:    1 MLDFVLHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKVKFTAALLNGIEPEDCGGVGTPFESEGNGDCLLNSVATFFAKE 102

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: D7G4F0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F0_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.270e-56
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1

Query:   43 MLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            MLD +LHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKG+FK KFTAALLNGIEPE GGGVGTPFES+GNGDCLLNSVAAFFAKE
Sbjct:    1 MLDFVLHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKVKFTAALLNGIEPEGGGGVGTPFESEGNGDCLLNSVAAFFAKE 102

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: A0A6H5K057_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K057_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.270e-56
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 1

Query:    1 MANSQPQALAKVRGMLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAK 345
            M++SQ QALAKVRGMLD +LHPSSPDTSGIPV DE+L+KV EWVSK+EDPIDGELLPDA QTA+ELLAKG+FKDKFTAALLNGIEPEDGG VGTPFES GNGDCLLNSVA    K
Sbjct:    1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVSKREDPIDGELLPDACQTAEELLAKGLFKDKFTAALLNGIEPEDGG-VGTPFESDGNGDCLLNSVATMAVK 114

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: D7FWX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX9_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 7.920e-55
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1

Query:   43 MLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            MLD +LHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELL KG+FKDKFTAALLNGIEPEDGGGVGTPFES+ NGDCLLNSVAAFFAKE
Sbjct:    1 MLDFVLHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLTKGLFKDKFTAALLNGIEPEDGGGVGTPFESESNGDCLLNSVAAFFAKE 102

[Close]

BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 9.860e-51
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 1

Query:    1 MANSQPQALAKVRGMLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELL------AKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            MANSQ QALAKVRG LD +LHPSSPDTSGIPVEDERLQKVTE VSKQ+DP+DGELLPDAS+   EL        +G+FK KFTAALLNG++PEDGGGVGTPFES+GNGDCLLNSVAAF AKE
Sbjct:    1 MANSQLQALAKVRGTLDFVLHPSSPDTSGIPVEDERLQKVTECVSKQDDPVDGELLPDASKVHGELTDRKGAPGEGLFKGKFTAALLNGVKPEDGGGVGTPFESEGNGDCLLNSVAAFLAKE 122

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BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.840e-48
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 1

Query:   64 PSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKGNGDCLLNSVAAFFAKE 348
            P SPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKG+FKDKFTAALLNG+EPED GGVGTPFES+GNGDCLLNSVAA FA E
Sbjct:   16 PVSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKDKFTAALLNGVEPEDDGGVGTPFESEGNGDCLLNSVAALFANE 110

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig103.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23


Match Name	E-value	Identity	Description
A0A6H5JP53_9PHAE	3.590e-74	68.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FZ28_ECTSI	1.180e-67	93.10	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KLL4_9PHAE	2.800e-62	86.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3L3_ECTSI	5.210e-59	93.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G0J6_ECTSI	1.260e-58	93.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G4F0_ECTSI	1.270e-56	94.12	MULE domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5K057_9PHAE	2.270e-56	83.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWX9_ECTSI	7.920e-55	94.12	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K9T1_9PHAE	9.860e-51	78.69	SWIM-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KB76_9PHAE	1.840e-48	92.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig103	contig	Ecto-sp6_S_contig103:537063..538107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	614
Hectar predicted targeting category	other localisation
Exons	2
Cds size	375

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348743.9337595-UTR-Ecto-sp6_S_contig103:537062..537301	1682348743.9337595-UTR-Ecto-sp6_S_contig103:537062..537301	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig103 537063..537301 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348743.9412947-CDS-Ecto-sp6_S_contig103:537301..537493	1682348743.9412947-CDS-Ecto-sp6_S_contig103:537301..537493	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig103 537302..537493 -
1682348743.948377-CDS-Ecto-sp6_S_contig103:537924..538107	1682348743.948377-CDS-Ecto-sp6_S_contig103:537924..538107	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig103 537925..538107 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig103.926.1	prot_Ecto-sp6_S_contig103.926.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig103 537302..538107 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig103:537063..538107-
coding sequence from alignment at Ecto-sp6_S_contig103:537063..538107-

protein sequence of mRNA_Ecto-sp6_S_contig103.926.1

>prot_Ecto-sp6_S_contig103.926.1 ID=prot_Ecto-sp6_S_contig103.926.1|Name=mRNA_Ecto-sp6_S_contig103.926.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=125bp
MANSQPQALAKVRGMLDTILHPSSPDTSGIPVEDERLQKVTEWVSKQEDP
IDGELLPDASQTAKELLAKGVFKDKFTAALLNGIEPEDGGGVGTPFESKG
NGDCLLNSVAAFFAKEEVLSRQWR*

mRNA from alignment at Ecto-sp6_S_contig103:537063..538107-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig103.926.1 ID=mRNA_Ecto-sp6_S_contig103.926.1|Name=mRNA_Ecto-sp6_S_contig103.926.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1045bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:537063..538107- (Ectocarpus species6 EcLAC_371)
ATGGCGAACTCTCAGCCTCAGGCGCTGGCAAAGGTCCGTGGGATGCTAGA
CACTATCCTCCACCCGTCTTCTCCTGACACGAGTGGCATACCTGTCGAAG
ATGAGAGGCTGCAGAAGGTGACGGAGTGGGTGTCCAAGCAGGAAGATCCC
ATTGACGGCGAACTGCTGCCAGATGCATCCCAGGTGTGCTCTTAAGGTCG
GGTCCGTGATTGATGCTCCAGGCGCGATGGTCGACGAAGGTTTTTGTTTT
TTTCACCAGACTGCAAACGGACTGCAAAACCGCACTGCAAAACATCTACA
CGACGTTGTTGTATGGAGATGGGGTAGCAGCCTCGTATCGGAAAGATTGA
ACTATGATCTGCTCGTAGCAGCATGGTTATTCCATCTGGTAGGTAGATTT
TTTTTTGCGCTGCTGTGCCATTCGTGCTCCATACATATGTGTCGTTGGTT
TCATACCGGGAGTAGACAGGGTAAATGTAGCCATGGTGAACTTAAATGTA
CGCTCTCCGTTTCATAATTAATTCATGATCAGCTTCATGATCGTAATCTT
CTCAACAATGACGATAAACTTGATAATTTATGGCCGTAATGTATCCTCCT
CGATTCCCGTCCAGACCGCAAAGGAGCTTCTGGCGAAGGGCGTGTTTAAG
GACAAGTTCACCGCGGCTCTCCTTAACGGGATTGAACCCGAAGATGGTGG
GGGCGTGGGCACTCCGTTCGAGAGCAAGGGCAACGGCGATTGCTTGTTGA
ATTCGGTGGCGGCATTCTTTGCCAAGGAGGAAGTGCTGTCAAGACAATGG
CGGTGAAGCTTCGACTCAGCGTCGTGCTGTACGGGCTGAAGTACATGGAG
ATATTTCTGCTGGAGCAGGATGACCATTTTGGGGCATGGTACAACTACAC
GTCGGATGTGCGGGAAAGGCTGGAGAAGAACGGGTGGCATGTGGTGCCCG
ACGTCGACAACAACTGGCACGTCGGGTTGTCAACCTGCTCGCGGCTATTG
TTCCTTGCGCAGCTGCGGAGCATAGCAAAGCCTGGGGCATGGCTC

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:537063..538107-

>mRNA_Ecto-sp6_S_contig103.926.1 ID=mRNA_Ecto-sp6_S_contig103.926.1|Name=mRNA_Ecto-sp6_S_contig103.926.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:537063..538107- (Ectocarpus species6 EcLAC_371)
ATGGCGAACTCTCAGCCTCAGGCGCTGGCAAAGGTCCGTGGGATGCTAGA
CACTATCCTCCACCCGTCTTCTCCTGACACGAGTGGCATACCTGTCGAAG
ATGAGAGGCTGCAGAAGGTGACGGAGTGGGTGTCCAAGCAGGAAGATCCC
ATTGACGGCGAACTGCTGCCAGATGCATCCCAGACCGCAAAGGAGCTTCT
GGCGAAGGGCGTGTTTAAGGACAAGTTCACCGCGGCTCTCCTTAACGGGA
TTGAACCCGAAGATGGTGGGGGCGTGGGCACTCCGTTCGAGAGCAAGGGC
AACGGCGATTGCTTGTTGAATTCGGTGGCGGCATTCTTTGCCAAGGAGGA
AGTGCTGTCAAGACAATGGCGGTGA