mRNA_Ecto-sp6_S_contig103.925.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.925.1
Unique NamemRNA_Ecto-sp6_S_contig103.925.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.925.1 vs. uniprot
Match: A0A6H5KKA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKA8_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 7.160e-5
Identity = 26/41 (63.41%), Postives = 28/41 (68.29%), Query Frame = 2 
Query:  128 RGFLAR----RPGFPLQRLFFLFDFSVVSEYVEQHTVVVNY 238
            RG +AR      GF L   FFLF FSVVSEYVEQHTV+ NY
Sbjct:   11 RGIIARVFGSETGFSLATPFFLFGFSVVSEYVEQHTVMANY 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKA8_9PHAE7.160e-563.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:527301..528340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1040
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348743.896714-UTR-Ecto-sp6_S_contig103:527300..5276531682348743.896714-UTR-Ecto-sp6_S_contig103:527300..527653Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 527301..527653 +
1682348743.9117467-UTR-Ecto-sp6_S_contig103:527821..5283401682348743.9117467-UTR-Ecto-sp6_S_contig103:527821..528340Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 527822..528340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348743.9044583-CDS-Ecto-sp6_S_contig103:527653..5278211682348743.9044583-CDS-Ecto-sp6_S_contig103:527653..527821Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 527654..527821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.925.1prot_Ecto-sp6_S_contig103.925.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 527654..527821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.925.1

>prot_Ecto-sp6_S_contig103.925.1 ID=prot_Ecto-sp6_S_contig103.925.1|Name=mRNA_Ecto-sp6_S_contig103.925.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=56bp
MSLRCPHASSASVGHSLSSLSVVRLSCGSNTSYQRDFLVTGHKYGHTRQA
LRLQE*
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mRNA from alignment at Ecto-sp6_S_contig103:527301..528340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.925.1 ID=mRNA_Ecto-sp6_S_contig103.925.1|Name=mRNA_Ecto-sp6_S_contig103.925.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1040bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:527301..528340+ (Ectocarpus species6 EcLAC_371)
TGTAGGGGAATTGAAGTAGTTCAAATGCCAACGTAGCGCTGTAATTGGCC
TTTCGTATGTAGGGAATTGGAGTAGTTGAGATGACAACGATGATGTTTTA
TTTCGGTAGTCAGTCGTGGAATCATTGCGAGGGTTTTTGGCTCGGAGGCC
GGGTTTTCCCTTACAACGCCTTTTTTTTCTGTTTGATTTTTCGGTAGTAT
CCGAGTACGTTGAGCAACACACAGTGGTGGTTAATTACTAGCGTAAGGAA
CCAGGGAGGGTGTTCGTGTGTGCATGTGTAGGAAGGATCTGAGGACGGTT
CTATGTTCCGTAGATGAAGGGACCTGCTGTGGTACCTGTTGTGGTAGACT
TGGATGAGTCTGCGTTGCCCCCATGCTTCGTCAGCCTCTGTGGGGCACTC
TCTTTCTTCTCTGTCTGTCGTGCGTTTGTCCTGCGGATCTAATACAAGCT
ATCAACGAGACTTTCTAGTCACTGGACACAAATACGGGCATACCCGACAA
GCACTCCGGCTCCAGGAGTGATCAACAACCTCTTCGGATGCGTGTTGGAG
TATTTTTCAAACCTTTTTGGGGTGACCGTATGGAGTAAAAGTACGGGTCG
CTCGTCCAAGGATCCATCCTTTTTTGTCACGCCACGGGAATAGTTTGGGC
TTTGGACTTCAAGAACTTATCGTTGAGATCTGCGAAAACTGTATCTATAG
ATGCTGCAGCGTATTCTAGAACGGTTTACCCCGTGGCATGTTCAAACTTG
GAGGCGCATGAATTGGTGTCGTGGTAAGTGAGGGTTTCCAAAGACTTGCA
TCAAAGATTCAACAAAAAATGGTGCTTTCAATAATATCTCTTTCTTGCAC
TGTGCCCGCTGCATCGTCCCTCTTGTTGTCGTGTTGTTGATGATGTGGAG
CACAATGTTTGCCGTATTTGGCTGTTCTGTTGTTGTACACTCTTGATTGG
TGAAATAGATCAACCATGCGTTTCGGGCGTGTTTAGAACAAATGTCCTCT
TCCCACCTGGCAAACCAAATACATGAGATTTCATATGCAT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:527301..528340+

>mRNA_Ecto-sp6_S_contig103.925.1 ID=mRNA_Ecto-sp6_S_contig103.925.1|Name=mRNA_Ecto-sp6_S_contig103.925.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:527301..528340+ (Ectocarpus species6 EcLAC_371)
ATGAGTCTGCGTTGCCCCCATGCTTCGTCAGCCTCTGTGGGGCACTCTCT
TTCTTCTCTGTCTGTCGTGCGTTTGTCCTGCGGATCTAATACAAGCTATC
AACGAGACTTTCTAGTCACTGGACACAAATACGGGCATACCCGACAAGCA
CTCCGGCTCCAGGAGTGA
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