mRNA_Ecto-sp6_S_contig103.923.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.923.1
Unique NamemRNA_Ecto-sp6_S_contig103.923.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI)

HSP 1 Score: 528 bits (1360), Expect = 7.950e-175
Identity = 303/518 (58.49%), Postives = 351/518 (67.76%), Query Frame = 1
Query:    7 AALRIAVETKMVIENLKVWGHSPLFTVEPGGFLRLESGEFSTPPEGGTTRDTKSRLRVEMGGEF*VWGKTWFTKSAITFMRPCTKDRSWIRNNRRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPPFYLPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKT-AVPDITADGVDPDNERLQLKTLVTADPTPAMAALMRRAAMTVGGGFTWSAEEEFDAALRKERSRMRDKVLGRPANGQVEEKEGAPGKSPPTKNDEGYGGDDNGDPR*RTGTKIGGVTSGTSSKKEAGNAADNGLTDPEISNTGISCGRASGRRMPWGR*RMNWNAEVAVDSDGPQPDWGDDMSPRPVTWR*---ASRGKP*LTWPTCARRRREAGSETTLGSSTRAGRLGMPFVATATADERTAATATPPTAF----TTVSIDYSLHVVEKACEVRLEGEFVWGRYTDSL*RLL 1536
            AALRI+V  +M IEN+K    SPL  V+PGG LRLE  +F TPPEGGT  DT SR+R+E GGE  VWG+ WFTKSAIT M+P  K+ SWI NN RRN   W   +WNR                       PPF  PFGPK+S G++FWERFDISP YLKVGEELRYPSSMTS MDGSVLS+GADGTLLHAT DR+ HF LE+KTAVEA EAA D +EH  KT +VPDITADGVDPDN+RLQL+TLV ADP  AMAALM R   TVGGG TW+A+EEFDA LR+E SRMRD +LGR ANGQ EEK+G  G+SPPTK DE  G  DNGDPR     + GGVT GTSSKKE GNAADNGLTDP+I+NTG +CGRAS RRMPWGR RM WNAEVAVDSDGP P WGD    +         +  G+  +      + ++       +       ++G  F     +  + ++ + P  +     T VS DYSLHVVEK  EVRLEGEFVWG YTDS+ R L
Sbjct:  155 AALRISVR-QMSIENIK-GDTSPLLRVDPGGLLRLEIHDFGTPPEGGTMTDTNSRVRIEEGGEVQVWGEPWFTKSAITLMKPFKKEPSWILNNMRRNHAHWQRQRWNRQQQQKMTGGQHAGGGTTGKPQ--PPFCSPFGPKISEGYSFWERFDISPSYLKVGEELRYPSSMTSLMDGSVLSMGADGTLLHATADRRTHFHLEMKTAVEAAEAASDLEEHARKTKSVPDITADGVDPDNKRLQLQTLVAADPAKAMAALMGRPGTTVGGGPTWAADEEFDATLRREWSRMRDTLLGRTANGQAEEKKGGLGQSPPTKTDEADGSGDNGDPRQHK--ETGGVTGGTSSKKETGNAADNGLTDPDINNTGNTCGRASRRRMPWGRKRMKWNAEVAVDSDGPLPYWGDGTVLKVTETGDVVVSIAGEIVIEMANPRKAKKGGWFRNHVRKHNPIRKVGDAFRRHLHSRRKGSSNSDPSDSVHDTDTIVSTDYSLHVVEKGFEVRLEGEFVWGWYTDSIGRPL 666          
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: D7G0S1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S1_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 3.170e-74
Identity = 141/222 (63.51%), Postives = 146/222 (65.77%), Query Frame = 1
Query:  244 MRPCTKDRSWIRNNRRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPPFYLPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKTAVPDITADGVDPDNERLQLKTLVTADPTPAMAALMRRAAMTVGGGFTWSAEEEFDAALRKERSRMRDKVLGRPANGQV 909
            MRPCTK RSWIRNN+RRNEV                                                              GEELRYP SMTSRMDGSVLS+GADGTLLHATEDRQNHFRLE+KT VEA EAAED DEHETKTAVPDITAD VDPDNERLQ KTLV ADP  A+AALMRR AMTVGGG TWSAEEEFDAALRKE SR+RDKVLGR ANGQV
Sbjct:    1 MRPCTKGRSWIRNNKRRNEV--------------------------------------------------------------GEELRYPPSMTSRMDGSVLSMGADGTLLHATEDRQNHFRLEMKTVVEAAEAAEDLDEHETKTAVPDITADSVDPDNERLQPKTLVAADPATAIAALMRRPAMTVGGGLTWSAEEEFDAALRKEWSRLRDKVLGRTANGQV 160          
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.830e-18
Identity = 76/201 (37.81%), Postives = 109/201 (54.23%), Query Frame = 1
Query:   37 MVIENLKVWGHSPLFTVEPGGFLRLESGEFSTPPEGGTTRDTKSRLRVEMGGEF*VWGKTWFTKSAITFMR-PCTKDRSWIRNNRRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPPFY----LPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTA 624
            M++ENL+    S +FT+EP G++ L    +   PE GT +D  S + ++ GGE  V  +  +T S++   + P  KD  WI+  R R   RW   Q+ +  XXXXXXXXX             P Y     PF P+  A +TF ER  ++P YL  GEELR+PS MTS     V+++G+DG+L+ A   R +  R E+K A
Sbjct: 1137 MLVENLE-GDSSEIFTIEPEGYVGLHPTAWGPLPEDGTKKDAHSLVNIKKGGELFVGAEVRYTASSMKVAKTPVAKDLVWIQLQRLRR--RWLEQQYQQRLXXXXXXXXXEDGDRGASAAAGSPPYGDDLSPFSPERYAKYTFEERLKLTPTYLMAGEELRFPSRMTSLDRRHVMTVGSDGSLVLANIARYHGLRREVKRA 1334          
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.260e-17
Identity = 84/251 (33.47%), Postives = 118/251 (47.01%), Query Frame = 1
Query:    7 AALRIAVETKMVIENLKVWGHS-PLFTVEPGGFLRLESGEFSTPPEGGTTRDTKSRLRVEMGGEF*VWGKTWFTKSAITFMRPCT-KDRSWIRNNRRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPPFYLPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKTAVPDITADGVDPDNERLQLKTLVTAD 753
            A L  AV + +++E L+  G S  +FT+EPGGFL  +  +    PE GT +D  S L  + GGEF       +T S+IT +     +D +WIR  R R   RW    + RH                           PF P  SA +T+ +R  + P +L VGEELR+PSS+T+      +++G DG+L+ A  DR      E+  AVE   + E+          PD   DG DP    L+LK L  AD
Sbjct:  678 ATLSFAVAS-LLVEKLE--GDSGEIFTIEPGGFLGGQFDQLRPLPENGTKKDEHSLLHAKEGGEFYFDALVRYTSSSITMVAVSVIEDPAWIRLQRLRR--RWIERHFQRHQQQS-----------------------PFSPDRSAEYTYEQRLGLKPTHLMVGEELRFPSSLTTLDRSHTMTMGTDGSLVLAKADRYVVLFDEMIEAVETRASVEETTMATLAGLSPDY--DGGDPG---LELKILALAD 895          
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.780e-16
Identity = 99/249 (39.76%), Postives = 134/249 (53.82%), Query Frame = 1
Query:   76 LFTVEPGGFLRLESGEFSTPPEGGTTRDTKSRLRVEMGGEF*VWGKTWFTKSAIT-FMRPCTKDRSWIRNN-----RRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPP------FYLPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKTAVPDITADGVDPDNERLQLKTLVTADPTPAMAALMRR 786
            +FTVEP G++ L +      P+ G+  D  S + V+ GGEF       +T S ++  + P  ++ SW+R +     R R ++        +H XXXXXXXXXXXXXXXXXXX  PP      F   F P  SA HTF +R  +SP Y+ VGEELR+PS+MTS  +  V+++G DG+LLH    R   FR E+  AVE   +     E+      PD   DG D   +R  LK L  ADP  AM ++  R
Sbjct: 1214 IFTVEPQGYVGLHAHGQGPVPQDGSEEDNNSLVHVQTGGEFFFDCHARYTTSGMSAVLIPYPENPSWMRLHVLSRLRTRRQLE------QQHHXXXXXXXXXXXXXXXXXXXTTPPSTTAGEFSSLFSP--SAQHTFQDRQLLSPSYITVGEELRFPSTMTSLDEKHVMAMGFDGSLLHTGPQRYRFFREEMVQAVENRPSGTLSTENILSGLNPDY--DGGD---QRADLKVLAAADPAQAMRSIPGR 1449          
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.250e-16
Identity = 106/272 (38.97%), Postives = 139/272 (51.10%), Query Frame = 1
Query:    7 AALRIAVETKMVIENLKVWGHSPLFTVEPGGFLRLESGEFSTPPEGGTTRDTKSRLRVEMGGEF*VWGKTWFTKSAIT-FMRPCTKDRSWIRNN-----RRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPP------FYLPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKTAVPDITADGVDPDNERLQLKTLVTADPTPAMAALMRR 786
            A LR  V T  V +   V G   +FTVE  G++ L +      P+ G   D  S + V+ GGEF       +T S ++  + P  ++ SW+R +     R R ++        +H XXXXXXXXXXXXXXXXXX   PP      F   F P  SA HTF +R  +SP Y+ VGEELR+PS+MTS  +  V+++G DG+LLH    R   FR E+  AVE   +     E+      PD   DG DP   R  LK L  ADP  AM +   R
Sbjct: 1192 AKLRFGVSTMRVEKLEGVSG--AIFTVERQGYVGLHAHGQGPTPQDGYEEDNNSLVHVQTGGEFFFDCHARYTASGMSAVLIPYPENPSWMRLHVPSRLRARRQLE------QQHHXXXXXXXXXXXXXXXXXXGTTPPSSTVGEFSSLFSP--SAQHTFQDRQLLSPSYITVGEELRFPSTMTSLDEKHVMAMGFDGSLLHTGPQRYRFFRDEMVQAVENRPSGTVSTENILSGLNPDY--DGGDP---RADLKVLAAADPAQAMRSFPGR 1448          
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Match: A0A6H5JJM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.010e-10
Identity = 99/267 (37.08%), Postives = 135/267 (50.56%), Query Frame = 1
Query:    7 AALRIAVETKMVIENLKVWGHSPLFTVEPGGFLRLESGEFSTPPEGGTTRDTKSRLRVEMGGEF*VWGKTWFTKSAIT-FMRPCTKDRSWIRNN-----RRRNEVRWTWGQWNRHXXXXXXXXXXXXXXXXXXXXXXPPFYLPFGPKVSAGH-TFWERFDISPLYLKVGEELRYPSSMTSRMDGSVLSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKTAVPDITADGVDPDNERLQLKTLVTADPTPAMAALMRR 786
            A LR  V T M +E L+    + +FTVEP G++ L +      P  G+  DT S + V+ GGEF       +T S ++  + P  ++ SW+R +     R R ++        +H XXXXXXXXXXXXXXXXXXX  PP         +AG  +FW           VGEELR+PS+MTS  +  V+++G DG+LLH    R   FR E+  AVE   +     ++      PD   DG +P   R  LK L  ADP  AM +   R
Sbjct:  184 AKLRFGVST-MRVEKLEGISGA-IFTVEPQGYVGLYAHGQGPVPHDGSEEDTNSLVHVQTGGEFFFDCHARYTASGMSAVVIPYPENPSWMRLHVLSWLRTRRQLE------QQHHXXXXXXXXXXXXXXXXXXXTTPP-------STTAGEFSFWPGSGCL-----VGEELRFPSTMTSLDEKHVMTMGFDGSLLHTGPQRYRFFRDEMVQAVENRPSGTLSTQNILSGLNPDY--DGGEP---RADLKVLAAADPAQAMRSFRGR 425          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0Y7_ECTSI7.950e-17558.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S1_ECTSI3.170e-7463.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE7.830e-1837.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9G6_ECTSI3.260e-1733.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ3_ECTSI4.780e-1639.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ0_ECTSI8.250e-1638.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJM2_9PHAE2.010e-1037.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:487005..493080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2463
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_001770.1
Cds size753
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.923.1prot_Ecto-sp6_S_contig103.923.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 489984..491348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348743.767018-UTR-Ecto-sp6_S_contig103:487004..4882261682348743.767018-UTR-Ecto-sp6_S_contig103:487004..488226Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 487005..488226 -
1682348743.7764552-UTR-Ecto-sp6_S_contig103:489090..4893161682348743.7764552-UTR-Ecto-sp6_S_contig103:489090..489316Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 489091..489316 -
1682348743.785589-UTR-Ecto-sp6_S_contig103:489964..4899831682348743.785589-UTR-Ecto-sp6_S_contig103:489964..489983Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 489965..489983 -
1682348743.813282-UTR-Ecto-sp6_S_contig103:491348..4914381682348743.813282-UTR-Ecto-sp6_S_contig103:491348..491438Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 491349..491438 -
1682348743.8227935-UTR-Ecto-sp6_S_contig103:492200..4922921682348743.8227935-UTR-Ecto-sp6_S_contig103:492200..492292Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 492201..492292 -
1682348743.8323393-UTR-Ecto-sp6_S_contig103:493019..4930801682348743.8323393-UTR-Ecto-sp6_S_contig103:493019..493080Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 493020..493080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348743.7948298-CDS-Ecto-sp6_S_contig103:489983..4904931682348743.7948298-CDS-Ecto-sp6_S_contig103:489983..490493Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 489984..490493 -
1682348743.80401-CDS-Ecto-sp6_S_contig103:491105..4913481682348743.80401-CDS-Ecto-sp6_S_contig103:491105..491348Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 491106..491348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.923.1

>prot_Ecto-sp6_S_contig103.923.1 ID=prot_Ecto-sp6_S_contig103.923.1|Name=mRNA_Ecto-sp6_S_contig103.923.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=251bp
MRPCTKDRSWIRNNRRRNEVRWTWGQWNRHHQQQQQRSGAQPASATTARK
KQPPFYLPFGPKVSAGHTFWERFDISPLYLKVGEELRYPSSMTSRMDGSV
LSIGADGTLLHATEDRQNHFRLEIKTAVEATEAAEDFDEHETKTAVPDIT
ADGVDPDNERLQLKTLVTADPTPAMAALMRRAAMTVGGGFTWSAEEEFDA
ALRKERSRMRDKVLGRPANGQVEEKEGAPGKSPPTKNDEGYGGDDNGDPR
*
back to top

mRNA from alignment at Ecto-sp6_S_contig103:487005..493080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.923.1 ID=mRNA_Ecto-sp6_S_contig103.923.1|Name=mRNA_Ecto-sp6_S_contig103.923.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6076bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:487005..493080- (Ectocarpus species6 EcLAC_371)
ATGGGCGCTGCCCTGCGGATCGCCGTGGAGACGAAGATGGTGATCGAAAA TCTCAAGGTCTGTATGTCTTCATGCTTCTCTCTTTCTCCATCATGGCATA CCCTCATCTGCTGTCGTTGTGGCCGGAGTGATTGACTGCTGCAAATCTCG CTGCGGGCAATCCGTGGGAGGTGTCCTATTTCGGGCAGGGGGTGTTTGAG GTGCATGACCTTGTCGGCGCGTTCAAACCAAGGCCACACTTCGGTGCCCT TCCGCGTTGTCGGTGCTCGAGCACGTGTTTTATCTCAACGTGCGACTGCA GCAACCTCAGTGTTAGCTGTGTACCGTCGGCCTGCCTTCGGCCACGCGCA CGTCCAACCTTTGAGGAGGAGGGTCATGCACAGAGATCCCCCGTGAGCCG TTCCCACGGCTTCGGGTGGGTAGGAAGATCTTTTTGCGGCCTTTGTCTTG CCATGTCTGCTTGCCCTATGCCTCTCACGCTCTCTGCTGAAGGGCTACGA TCCAGGGTCACACAGGAAACGCCTGTCCAATGCATAGGCAGTAGTATATG GGCATGAGCGTTACGTTCTACGTGGTGAACTTCGTTGCCGCCTAACATTC TTGGGAGGGTGAGAAAGGGCGCACTCAATGTGTCCACTTGCAGCAGGTTA CGATGAGGTCATTGGCTTCAGTTGAGCAAAGCATAGCTTCCACGTGAATG ACCTAGGCACCACACCCTGCTTTGATTGAATCCAGCCGCGTCAGTAGTTT AGTTTGGCTGTTTCGTTGCCGTTGTTTCTGGTGTGCAGGGGGACACAGTC CACTCTTCACGGTCGAACCGGGAGGGTTTCTACGTCTGGAAAGCGGCGAA TTCAGTACGCCGCCGGAGGGTGGTACCACGGTGAGCCAACCTTTTGCTGT TGTTGTTGTTGATGGTGGTAGTCATTTGGCATTGTGGAGATTGTTGCTGG TGGTTCCTGTCGGTATCGTCTCTTTGAGCAGAATGAGTGTGCTCCCTTGT GGTCCAACTAAGTTGCCTCCTCGTCTGTGCTCCACGGTGCAAGTTCTGAA TGAGACCTTTTCATCAGACTTGACGGATTACACACCAACAGATCCTCGCT CCACGCATTCATACGAACCTAACCTAAAGCCGAAAGCCAACCTTGGCGCG TGAGCGCAACAATAGAAACCTAACGTCTAACACCAAACTTTACACAATAT GAAGGCAGCAATATTCTTGACCCCTTCCGGCATTTAGAGCGACCTAACGA TCGGATAAAGTCGCATAAATCGTTGTTGAACAGCCGATGGGCAGAGGACC CAAGCAACACATTAATCTTCACGAAACAGGTGCCTTTCGTGAAAGCAGCA CGGCACAGGTTCGCGGTGGCAAGACCGACCCGTGATGTGTTGCTACGGTT CACACGTTAGAGTTACCCTGTAACCACCGGAAAGACGCCGAACCTACTTT CCCGCCACGGTGTACAACGCCCTAGACATTGCTCCGACTATTGGGTAGCA CGTGCGTCAAGGGAACCTATCGCTAACCCGCAACGTTGGAATCTCTGCTG ATCGCCCTTCTTTTTTTTTGCTTACCTCACCACACGACACTTCTCTCTAC TGCTCCCGTCCCGCTCTTCCTCTCGTGTGTGACCTGCAACAGAGGGACAC TAAATCCCGGTTGCGCGTGGAGATGGGAGGGGAGTTTTAAGTCTGGGGTA AGACGTGGTTCACGAAGTCGGCCATCACCTTCATGAGGCCCTGCACAAAG GACCGCTCCTGGATCAGGAACAACAGACGGCGGAACGAGGTGCGGTGGAC GTGGGGGCAATGGAACCGACACCACCAACAGCAGCAGCAGCGGAGCGGCG CCCAGCCCGCCAGCGCTACGACCGCCCGCAAAAAGCAGCCGCCGTTCTAC TTGCCCTTCGGCCCGAAGGTCTCGGCGGGGCACACTTTCTGGGAGCGCTT TGATATCAGCCCGTTATACCTCAAAGTCAGGAAGGGATGTTGGTCGTTGT TTTGCAGACATTTCAAGAACCAGCTGTGGAGGGTTTTGAGGTCCGGAATA GAGGAGTTGATACCAGCATTGATAAGGAACAAGGGACTGAATGTATACTA TCGGTGGCTGGGGTTTGAAAGCGCGTGGGAAAAAACGAACGACACTTGGC ATTATTTTCCAACACGCGTGGGGACGGGTTGAGTGTAGATGCCTCACGGG CAGGTATTGGCTACGTTTCGTTCTGTTGAATCCAATCTGCAAAGTATTCG TACGAATGTTTAAATCCTGATCGTTTCGAGCGTTTGGTAGCCTTCCTGCA GAGGTTTGCGCTCCAATATTTATGATGTAGACTTGGCGATTTTTCCTACC TCCGATTGGTTGCCGTTTTATGTGGCTGCTGTGATTATCGTTGTTGCCCA TTCCATTTGCATCTAGAATGCTCTCTAGCAACAGACGTTTACGGTCTGGC GTTCGGGGTGATACACCCGTTCTTTTTCATTTCCGACGTCTATCTCGCCA CGCTTCTCCTTCTTCTTCGTCCATTCCTGACGCACTTCATCCTGCCATGC CCCTCTTGATGACTGTTGTCTGCGTCATGTTTTCAAGGTGGGTGAGGAGC TTCGATACCCGTCATCCATGACGAGCAGAATGGACGGCAGCGTCCTCTCC ATTGGGGCAGACGGCACCCTCTTGCATGCGACCGAGGACAGGCAGAATCA TTTCCGGCTGGAAATAAAGACGGCGGTGGAGGCCACCGAGGCAGCCGAAG ACTTTGACGAGCACGAGACGAAGACGGCCGTACCCGACATCACCGCAGAC GGTGTCGACCCCGACAACGAACGCCTGCAGCTAAAGACGCTTGTCACAGC TGACCCCACCCCAGCCATGGCCGCACTCATGCGTCGCGCAGCGATGACGG TCGGCGGGGGATTCACGTGGTCTGCCGAAGAAGAGTTCGATGCAGCCCTC CGCAAGGAACGGTCTCGTATGAGGGACAAAGTACTTGGACGACCGGCCAA CGGACAGGTAGAGGAGAAGGAAGGCGCTCCTGGAAAGTCCCCACCGACGA AGAACGATGAGGGCTACGGCGGCGATGACAATGGGGATCCCCGATAACGA ACCGGAACAAAGATAGGTGCGACCCGCGCACACGGTATTGAATTTGTTCG TCACAATCTTGGTCCTTGCAACCCGAGGGTGACTTTGCGCTTCGGTGATT CTCGCTGAACGGGAGTAGGGGGGTTCCCAGGCAGGCCTCCGTATCGATCT GTTACAATTTCTTTGATGGCGAGAGGAACTCACGCATGAGCCCTCGTCGT TGACACCATGAATTGGCAAGCAGGCACGTATGGCCAAGAGGATGTATCAT TAGGCGTCAAGGGTGGGCGTCGTTTGTCATCTTCCCATCGGTCGCTTTTG TCAGCGTCTTGTGTTGTGTTTGTTGTCAGAATCACAGGTCGTGATTGATT CCGCTCGAAAACAAATATGCTTTGTACCTGGCCAGCAAGAAGGAGTATAG AACTGCTTGTTGGTCAGAGAACCTTGGTTGAGGAGCGTTGAGAGCTTGGG CCAGGGCGTCGGAGCGGGAGAGGATGTTTCGCCATTCTATCATTGCGGAA AAACCTGGTCCATACCATTGTCATGCGGCTGCACCAATACAATCAACAAC ATGGCGAGCGGTGAAGTAAGCATTGGGTCATCGTCCGGTAGCAGGTACAC GCACCACATTGAGGAGCTCGTTCAAGGCAATGACGTCACTCCATTTCTTA CGTCCGATTATCAGGAGGAGTCACCAGCGGAACATCGTCGAAGAAGGAGG CAGGCAACGCAGCTGACAATGGGCTAACCGACCCAGAAATCAGCAACACC GGAATCTCTTGCGGCAGAGCCAGCGGTAGGCGAATGCCGTGGGGCCGTTA GCGAATGAATTGGAACGCTGAGGTCGCCGTCGACAGCGACGGACCGCAAC CGGACTGGGGCGACGACATGTCACCGAGACCGGTGACGTGGTGAGTGAAA AAGAGGGGGTCAGGGATTGATGAGGCATCTATTGGAATGGCTATACCGGC AGTCAAAAACAATGGAAGTGGAAGCATCCTGGCGCAGGTAGAAGCGGTCG GTAAGTCAGTTCGATATTGTAGTGCACGCAGTTGTTTGTGGCAGCAAGAG AGCTGGCCTTGGCGAGTGCAAAGCAAGCAAGTCGAGTTTTATGGCCGAGC CTGACACCACGTCATTGCCGTCCCGTCAATCCTGTCGGGTGGGCCATCGC GCACGTCACCCTCGCCAGTAAATTGTCGAAGTTTCCCGTTCCCATTCCTT CGAGCAGAGACTTTCACCACTTGTATGGTGCGGCAGGCGATTACACGGGC GGCCACGAGCCTGAACCACGGCCCAGAGTACGGTGAAATTCAACGAAATC TTGACCTGCTCCCTGCCACCATTCGTCTCAAGTCAAGTAGAACCCTTCAG TGCCGTCCGGCGAAATGAGTGATGTCGGTCCATCGTTGGTCGGTGATTCT GTACCCCGTTGCTACCTTTGCTTTTCAACGGGCCATTTCCGTTGAGAAGT CACGAATCTGGTGTCGCAGACACTAATCCCCGTGCTGGGCACGTGACTAA AGTGGGCCAATGGTTCTTGCCCTTGGCAATAACCCATGGCAAGCACGATG AAGTGTGAGGTGTTCTGCAGATCGGATTCCTGTCCAACACGACAACGCCA TGCCGAGCTCTACCGTGATGCCGAACGGAATGTTGATGAACGGTGTTTGT GTTGCTTTTGTCATCTTGCCCACAATACTGAAAACAACCTGGATGATATG TGATGAAGGTTGCTTTGGTTGTTGTTCATCGCATGGTTACCCTATCGCAA GCAGGCGGTAAGCATCGCGGGGGAAACCGTGATTGACATGGCCAACCTGC GCAAGGCGAAGAAGGGAGGCTGGTTCAGAAACCACCTTGGGAAGCTCAAC CCGAGCAGGAAGGTTGGGGATGCCTTTCGTCGCCACCGCCACAGCCGACG AAAGGACAGCAGCAACAGCGACTCCTCCGACAGCATTCACGACAGTCAGC ATCGACTACTCTCTCCACGTGGTGGAGAAGGCTTGCGAGGTCCGACTAGA GGGGGAGTTCGTGTGGGGACGGTACACCGATTCATTGTGACGCCTGCTAT GGTCGCCATCAGTGTTGAATGTTGCATGTTGCATGTTGCATTTCTCGCCG AACACTCGCATTGTTCGAGAAATTCCCTTGGTTTTCCAACCTCAACGCGG GAGGGAGGTTATAGGGGATGGTGCCCTGGACGTTTCCTTCAATCTCTTGT TCGGAGTGTATTAACTATCGTTGTTGCGACCGACGCAAGCTCAAAAATGA ATGTCTTGATGTTTTTCCAGACGTCACGCGTTTCGTCTGATAGACAGACA CAATCTTGAGATGACCCTGGATAGTAGCTATAGTGGAGAAGGCAACCGCG TGGTGGGTGTTATGGAAACGACCGTAGCATAGTGTAGAGGGAGTGAGCCG AGATTTCGCGAAGCATACAACAGCATCCCCGATGATGTATGGCCGGAAGC AAAATAGTACGGGATGAGTGAATGCGGGACATCTACAAACGCCATTTTGA CGTATGGCTCATTCGTGTCGTTGACGTACATATTGTGCACGTGTCGATCG CTATGCGCATGGTGGCCGGTTTTGCATGCATTTTCAGCGATTCGGTTCAT ACAAAGATTTACCATGTTGCGAACTATAGCTCCCGAGTGAGGCCGTCATA CAGGTAACATGTGGAGAAAAGGTTATTCGTTGAAACCCATTGCTACGGTT GCTTTCTAGCATGTCCCAACGAAATAATGTCAGTCCACAGACAAGAGCCA GGGGTAGATTTGCAGTGATTTCGTAGCGATGGTTGAATAAATCCCTGTGT AGGGAACCGTTGTGTAAGAGGTTGGGTAGAAACTGACGGCGGAGAACACT TGCACTAGCGGGGTCTCCACGAACAGCGAGAGACTCGACTCGGAGTTATT TTCGTTCTTGACCCAGACCGTGCTAGAGAACAACAAACAACAGTGAGAGG CAAGTCCTCTCTACAGAAGGCGAAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:487005..493080-

>mRNA_Ecto-sp6_S_contig103.923.1 ID=mRNA_Ecto-sp6_S_contig103.923.1|Name=mRNA_Ecto-sp6_S_contig103.923.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:487005..493080- (Ectocarpus species6 EcLAC_371)
ATGAGGCCCTGCACAAAGGACCGCTCCTGGATCAGGAACAACAGACGGCG
GAACGAGGTGCGGTGGACGTGGGGGCAATGGAACCGACACCACCAACAGC
AGCAGCAGCGGAGCGGCGCCCAGCCCGCCAGCGCTACGACCGCCCGCAAA
AAGCAGCCGCCGTTCTACTTGCCCTTCGGCCCGAAGGTCTCGGCGGGGCA
CACTTTCTGGGAGCGCTTTGATATCAGCCCGTTATACCTCAAAGTGGGTG
AGGAGCTTCGATACCCGTCATCCATGACGAGCAGAATGGACGGCAGCGTC
CTCTCCATTGGGGCAGACGGCACCCTCTTGCATGCGACCGAGGACAGGCA
GAATCATTTCCGGCTGGAAATAAAGACGGCGGTGGAGGCCACCGAGGCAG
CCGAAGACTTTGACGAGCACGAGACGAAGACGGCCGTACCCGACATCACC
GCAGACGGTGTCGACCCCGACAACGAACGCCTGCAGCTAAAGACGCTTGT
CACAGCTGACCCCACCCCAGCCATGGCCGCACTCATGCGTCGCGCAGCGA
TGACGGTCGGCGGGGGATTCACGTGGTCTGCCGAAGAAGAGTTCGATGCA
GCCCTCCGCAAGGAACGGTCTCGTATGAGGGACAAAGTACTTGGACGACC
GGCCAACGGACAGGTAGAGGAGAAGGAAGGCGCTCCTGGAAAGTCCCCAC
CGACGAAGAACGATGAGGGCTACGGCGGCGATGACAATGGGGATCCCCGA
TAA
back to top