Homology
BLAST of mRNA_Ecto-sp6_S_contig103.896.1 vs. uniprot
Match:
D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)
HSP 1 Score: 616 bits (1588), Expect = 1.270e-206
Identity = 384/461 (83.30%), Postives = 390/461 (84.60%), Query Frame = 1
Query: 1054 MEEFFPRKVMYRSANTLPVRREPLSSSYGAVVPTGVARWNARPLEGRRYARPRSRDDSSDLDSGGESDCEGRGSRDPGDDRRREGGKEGGLRESDGSSGRGXXXXXRAGATADDGDGREPPALNTVSTPTAFAEEAHAVAKPTARTEVAARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGSLGAAQSGIVLSDTTFLLGATQLGAAAA-------TGGLFPEAMAVGEEAETAVAAAVGGVAVSAEDAPANLSAVADEGVEGTEGLPPADRPTAAXXXXXXXXXXXXXXXXAPVGPWPCRRRRGAPSLFLSQRQRTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ 2415
MEEFFPRKVMYRS NTLPVRREPLSSSYGAV+PTGVAR NARPLEGRRYARPRS+DDSSDLDSGGESDCEGRGSR PGDDRRREGG+E GLRESDGSSGRG RAGATADDGDGREPPALNTV TPTAFAEEA AVAKPTARTE+AARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGSLGAAQSGIVLSDT FL+GATQLG+AAA TGGLFPEAMAVGEE ETAVAAAVGGVA SAED AN SAVADE VEGTEGLPP RTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ
Sbjct: 1 MEEFFPRKVMYRSTNTLPVRREPLSSSYGAVIPTGVARRNARPLEGRRYARPRSQDDSSDLDSGGESDCEGRGSRGPGDDRRREGGEESGLRESDGSSGRGSGGGTRAGATADDGDGREPPALNTVLTPTAFAEEAQAVAKPTARTEIAARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGSLGAAQSGIVLSDTAFLVGATQLGSAAANGGATAATGGLFPEAMAVGEETETAVAAAVGGVAASAEDTLANSSAVADEEVEGTEGLPP----------------------------------------------RTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ 415
BLAST of mRNA_Ecto-sp6_S_contig103.896.1 vs. uniprot
Match:
A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)
HSP 1 Score: 251 bits (641), Expect = 1.060e-66
Identity = 159/209 (76.08%), Postives = 161/209 (77.03%), Query Frame = 1
Query: 1723 MAVGEEAETAVAAAVGGVAVSAEDAPANLSAVADEGVEGTEGLPPADR----------------PTAAXXXXXXXXXXXXXXXXAPVGPWPCRRRRGAPSLFLSQRQRTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPENQ 2301
MAVGEE ETAVAAA GGVA S GLPP R XXXXXXXXXXXXXXXXA GPWPCRRRRGAPSLFLS+RQRTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPE +
Sbjct: 1 MAVGEETETAVAAAAGGVAASXXXXXXXXXXXXXXXXXXXXGLPPPGRRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQFGPWPCRRRRGAPSLFLSRRQRTGGLRCRGVGVGDAGRDTFRRQALSTVLGSGLRTQRLRMGCVSNSGTGSGVVRGHPASQGLQGRIAGGVSCMEFDSVGWQLAVGGENVTVYDFDRYLPEGE 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.896.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.27e-206 / Id = 83.30 Expect = 1.06e-66 / Id = 76.08 Sequence D7FXV0_ECTSI A0A6H5JZC0_9PHAE
Match Name E-value Identity Description
D7FXV0_ECTSI 1.270e-206 83.30 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JZC0_9PHAE 1.060e-66 76.08 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 2424 Hectar predicted targeting category other localisation Exons 3 Cds size 2424
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348740.8925414-CDS-Ecto-sp6_S_contig103:176103..177505 1682348740.8925414-CDS-Ecto-sp6_S_contig103:176103..177505 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 176104..177505 + 1682348740.902473-CDS-Ecto-sp6_S_contig103:177819..178712 1682348740.902473-CDS-Ecto-sp6_S_contig103:177819..178712 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 177820..178712 + 1682348740.9111526-CDS-Ecto-sp6_S_contig103:179840..179969 1682348740.9111526-CDS-Ecto-sp6_S_contig103:179840..179969 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 179841..179969 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.896.1
>prot_Ecto-sp6_S_contig103.896.1 ID=prot_Ecto-sp6_S_contig103.896.1|Name=mRNA_Ecto-sp6_S_contig103.896.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=808bp
MDKFLTPKGGKKTSAGNARRDGVAATSTAAEASIENGSSRARESSTTTTT back to top mRNA from alignment at Ecto-sp6_S_contig103:176104..179969+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.896.1 ID=mRNA_Ecto-sp6_S_contig103.896.1|Name=mRNA_Ecto-sp6_S_contig103.896.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3866bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:176104..179969+ (Ectocarpus species6 EcLAC_371)ATGGACAAGTTCCTGACACCAAAGGGCGGGAAGAAAACCTCGGCAGGCAA
CGCGAGACGTGACGGTGTTGCCGCAACGTCCACCGCCGCGGAAGCTTCCA
TCGAAAATGGCTCATCCCGGGCACGCGAGAGCAGCACTACAACAACAACT
AGACAAGGAGGAGCAACGGCAGGAGGACCGGCAAGAGAAGGAGGGCCCCA
GCCTGCAGCAAAGAAGCACAAGCCGATGGCCCTCAAGCAGCTGCGCGGCA
AAGAGCCGAGCGGCAGGAAGCCTGCCGGCCTTTCTCCGGCCCTGAAAGAG
CAATTACTCGCGAGGCCGCCCTCCAAGAAACGGCAGTTGGACAAGTCGCT
GCTGGGGGGTCATTCTAATCATTTGGACCGACGACGGCAGCACCGGCCCG
TTCCGGATGAAAACAGGGCCCCTGCCGCCTCGTCATCATCAAGCGCAACG
GAGCGCCAGCAGCTCGCTTCGAAGCCCAAGAGTGTCACGGAGAAGATCAG
GTCGAAACGGCGTCTCGCCGCGGCTGCCGCCGCCGCCGCCGAACGGGCGG
GGTGGTACGACATGCCTAGCGGCCGACAAGATCGGCGTAGCGGCGGGGCT
CCTGCTGCTGCTGCTGCTGATGCTGTGCAGGTAACGCCAGTGGCAGCATC
ACCACCGCCACCACCACCAGAAGTATCGGAAGCACCACCAGCGGCAGGAG
ACACAGGAAAAGCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGAAACATCAGGTGCAGCCGCCGCTGCCATCGCCGC
CGCAGCAGCAGAAACATCGTCATCAGCAGCAAGGGTGTCAGCAGAAGCGG
CGACACCACGAGCACGAGCAGCAGCACCAGCAGCACCAGACACGCCAGGT
GCAGCAGCTACAGCAACAACAACAACAAGGGTACCAGGAGCGGTGACGGC
ACGACGAGCAGGAGCAACTCCCCGAGGCACCCGTCCTGCACGAAACGCCT
CCGAGCGAGCGCGTGAGCCAGCGGCGGCTACGGCCCCTTCACGGGCGGGA
CGCATGGAGGAGTTCTTCCCGCGGAAGGTTATGTATCGGTCGGCCAATAC
GCTGCCCGTTCGGCGCGAACCGCTATCATCTTCGTACGGTGCGGTTGTTC
CCACGGGTGTGGCACGCTGGAATGCCCGACCCCTCGAGGGGCGGCGGTAC
GCGAGACCACGGTCGCGGGATGACTCCAGCGATCTCGACAGCGGTGGTGA
GAGCGATTGCGAAGGAAGGGGCAGCCGGGATCCTGGTGATGACCGCAGGC
GGGAGGGCGGAAAGGAGGGCGGGTTGCGGGAGTCCGATGGCAGCTCTGGG
CGAGGAAGCGGCGGGGGAGCTCGTGCTGGAGCCACGGCCGATGACGGCGA
CG GTAAGATTCTGTTTGAATGGTTGGAAAGCGGTCTTTTGGGATTCCCAG
AACCAACAATAGTACGTAGCATATGTTGGCTTGAAATCCTATTACTGCTG
AGTAGCAGTTTGGCCTACTGGTACTTCGTTCCGACCGCACCCGTGTCAAA
AGCCCGAACTGATGACGCATCTTCCCCGGCCATCGAACACTTTCTTGTCT
CCTTATTCGTCATTGAGTTCCACGATTGCCAATCAATGCCACCGCCGATT
CGTGTTTGCGGAAATCCCACAACTCGACGACGTTTGTTTTTTTGTTGGCG
TTAATTCGTTTTTCAGGCCGCGAACCACCAGCGCTGAACACAGTATCGAC
ACCAACAGCATTCGCAGAGGAAGCGCACGCGGTTGCCAAGCCGACAGCGA
GAACAGAGGTCGCGGCGAGAGCGGCGGCGGCGGCGGAGAGAAGGGCGGCG
GCGGCGGCAGCGGCATCGGCTGCGGCATCATCGGATGCGGGAGGGGGTCA
GCAAACCACCACGACGGCGGGCGCCGGTTCCTTGGGGGCAGCGCAGTCAG
GAATCGTGTTGTCGGATACCACCTTCTTACTGGGGGCTACGCAGTTGGGA
GCGGCGGCAGCAACAGGCGGCTTATTTCCCGAGGCGATGGCTGTCGGCGA
GGAGGCCGAGACAGCTGTAGCAGCAGCGGTGGGCGGTGTAGCGGTAAGCG
CGGAAGATGCACCTGCTAATCTAAGCGCCGTAGCCGACGAAGGGGTCGAG
GGGACCGAAGGACTCCCGCCGGCAGATAGACCAACAGCAGCAGCAGCAGA
GGAAGAACGAGAAACTTCAGGTGCTGCTGCTGCTGCTGCTGCGCCGGTTG
GACCGTGGCCCTGCCGCCGGAGGCGCGGAGCGCCCTCCCTCTTCCTGTCC
CAACGGCAGCGGACGGGGGGGCTACGCTGCCGTGGCGTCGGGGTCGGAGA
CGCCGGTAGGGACACCTTCAGGCGGCAGGCGCTGTCCACGGTGCTCGGAA
GCGGGCTCAGGACCCAACGGCTGAGGATGGGTTGCGTGTCCAACTCAGGG
ACGGGCTCCGGCGTGGTGAGGGGGCACCCGGCCAGCCAGGGCCTGCAGGG
TAGGATCGCGGGCGGGGTGTCGTGCATGGAGTTCGACTCCGTGGGGTGGC
AGCTCGCCGTTGGGGGCGAGAACGTCACGGTGTACGACTTCGACCGCTAC
CTGCCCGAG GTTCGTCGCGACTCGAGTATGCTTTTGGGGGGTGATCATGT
GTAGTTGCCAGGTGCATGATTCCCAGGCGCATGTAAACTGCGTCCTGCGG
GCGGGAAAGGGCGTAACATCGTTGTTTGAACGCGAAAACTGTTGTTTGCA
ATTGTCGTTCTTTGTTCCTGCGGCACAAAGGGCTGGTTTTGCTAAATAAT
ACGGGGGTCCGCTTCTTCTTTGAGATTCTGAGGTTACCAGGAAAATGCGA
GAGATACGGCTGCCAAGAATGCCACCCACAGTTTTGGTCTTGCTGTACGG
GCGAGGGGCGCGAATTATTCATGCTTGGAAACATTTGAACTTGAGCCACT
AAGTTGAGCCGTATGCGAAACCCGGAGATGGCGATGCAGGCATGCGAGGG
TATACGATCTGGGGGGGCTACGGCCATGCATAAGTCTTGTTCCATATACA
TACCGTAAGAAGCGGAGATATGTCACCCCCCCCTAGACCGGCCTTCAAAG
CTCGATTGCTCCACAAACCAAGGGGGTGCGGAGAGAGCCCGATACGTCTA
CGGAAAGCCCCTCGACGAGATGTCCCCaatacctccgcttttggtgttgg
cacaaGCTTGGTTGTGGAGCAATCGAGCTTTGAAAGTCGCTACATCTCCC
CGCCTCTTACGGAATACTACGGTACGGTATACGGTACGGTACAGACAAGC
TTGGTTGTGGAGCAATCGAGCTTTGAAAGTCGCTCCAGGGGGGATGACAT
CTCTCCGACTCTTACCGAATACCACGGTACGGTGTACGGTACGGTACAGA
CAAGCTTGGTTTTGGAGCAATCGAGCTCTGAAAGTCGCTCCAGGGGGGTT
GACATCTCCCCGACTCTTACGGAATACTACGGTACGGTGTACGGTACGGT
ACAGACAAGCTTGGTTTTGGAGCAATCGAGCTTTGAAAGTCGCTTCAGGG
AGGGTGACATCTCCCCGCCTCTTACGGTACCTCCCGGCGCTTCACGCTTG
GTGTGTGCTAGCCTGGCCCGGTGAGTCCCCGGCGTGCTCCAGTCCCGGTG
TTGTAGGGATGCGAGGGTAACGGTCTACCCACTCAAAGCATGCAAAACAT
GAGAGTACGCCCCCCGCCATTCTGCTCCCTCGCGCAGAACCAGCAAGTGA
AGCGCACACTCGAGTCCGGGGTTCGGGCGTACCTGCAGCCTACCGACGGC
ATCCAGACCAAGCGCACGGTGTCGTGCGTTCGGTGGAACCCGGCAAACGG
AGATCAGGCGAGTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:176104..179969+
>mRNA_Ecto-sp6_S_contig103.896.1 ID=mRNA_Ecto-sp6_S_contig103.896.1|Name=mRNA_Ecto-sp6_S_contig103.896.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2424bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:176104..179969+ (Ectocarpus species6 EcLAC_371) back to top