mRNA_Ecto-sp6_S_contig103.890.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A6H5L122_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L122_9PHAE) HSP 1 Score: 335 bits (860), Expect = 2.280e-110 Identity = 157/165 (95.15%), Postives = 161/165 (97.58%), Query Frame = 1 Query: 109 MGGAQSSESTGTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
MGGAQS+ES GTPFVP KILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGD AKIREA+K+NKEACLCLLNYKKDGSTFHNQFFLTPLFDE GTLAYFLGIQVQVKTASDGQEPENPGW+YTMGLHA
Sbjct: 1 MGGAQSAESAGTPFVPNKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDTAKIREAIKENKEACLCLLNYKKDGSTFHNQFFLTPLFDEGGTLAYFLGIQVQVKTASDGQEPENPGWVYTMGLHA 165
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A126X2E3_9PHAE (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E3_9PHAE) HSP 1 Score: 315 bits (806), Expect = 3.060e-102 Identity = 145/165 (87.88%), Postives = 155/165 (93.94%), Query Frame = 1 Query: 109 MGGAQSSESTGTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
MGGAQS+E +GTPF P K+LSVKDTILVDMMNGP+NSR+VSYCVTDPDLEDNPIIFCSDGFAEFTGYAK+EVEGRNCRFLQGAKTDPGDI KIREAVK+ KEACLCLLNYKKDGS FHNQFFLTPLFD G LAY+LGIQVQVKT +DGQEPENPGW+YTMGLHA
Sbjct: 1 MGGAQSAEPSGTPFKPAKLLSVKDTILVDMMNGPNNSRIVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKDEVEGRNCRFLQGAKTDPGDITKIREAVKEKKEACLCLLNYKKDGSIFHNQFFLTPLFDAEGKLAYYLGIQVQVKTGADGQEPENPGWVYTMGLHA 165
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A126WVC6_9PHAE (Putative LOV domain-containing protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A126WVC6_9PHAE) HSP 1 Score: 311 bits (796), Expect = 1.080e-100 Identity = 146/168 (86.90%), Postives = 157/168 (93.45%), Query Frame = 1 Query: 109 MGGAQSSEST---GTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
MGGAQS+E+T GTPF P+K+LSVKDTILVDMMNGP+NS+VVSYCVTDPDLEDNPIIFCSDGFA+FTGYAKEEVEGRNCRFLQGAKTDPGD+ KIREAV + KEACLCLLNYKKDGSTFHNQFFLTP+FD GTLAYFLGIQVQVKTA+ GQEP NPGWIYTMGLHA
Sbjct: 1 MGGAQSAETTPTSGTPFKPSKLLSVKDTILVDMMNGPENSKVVSYCVTDPDLEDNPIIFCSDGFADFTGYAKEEVEGRNCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 168
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A126WXS3_9PHAE (Putative LOV domain-containing protein n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A126WXS3_9PHAE) HSP 1 Score: 291 bits (744), Expect = 6.680e-93 Identity = 136/166 (81.93%), Postives = 148/166 (89.16%), Query Frame = 1 Query: 115 GAQSSEST---GTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
GA+ S ST GTPFVP K+LSVKDTILVDM++GPD+S+ +SYCVTDPDL DNPIIFCSDGFA FTGY KEEVEGRNCRFLQGAKTDPGD+AKIR AV + +EACLCLLNYKKDGSTF+NQFFLTPLFD GTLAYFLGIQVQVKT GQEPENPGW+YTMGLHA
Sbjct: 2 GAEQSASTEPLGTPFVPRKLLSVKDTILVDMLSGPDHSKNISYCVTDPDLHDNPIIFCSDGFASFTGYDKEEVEGRNCRFLQGAKTDPGDVAKIRSAVSEKREACLCLLNYKKDGSTFNNQFFLTPLFDAEGTLAYFLGIQVQVKTGDKGQEPENPGWVYTMGLHA 167
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A126WZ19_SARFS (Putative LOV domain-containing protein n=6 Tax=Sargassum TaxID=3015 RepID=A0A126WZ19_SARFS) HSP 1 Score: 253 bits (646), Expect = 3.100e-78 Identity = 119/166 (71.69%), Postives = 140/166 (84.34%), Query Frame = 1 Query: 109 MGGAQSSEST--GTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEP-ENPGWIYTMGL 597
MG QSS S GTPFVP K LSVKD I+VDM+NGPD+S+ + YCV+DPDL DNPIIFCSDGF+E GY +EEVEGRNCRFLQGAKTDPGDIA+IR+A+K+NKEACLCL+NYKKDGS F+NQF+L PLFD G LAYFLGIQV+V+T D Q+P +N GW++TM L
Sbjct: 1 MGAEQSSSSDLLGTPFVPKKQLSVKDVIIVDMLNGPDHSKTLCYCVSDPDLGDNPIIFCSDGFSELVGYTREEVEGRNCRFLQGAKTDPGDIAEIRDAIKENKEACLCLINYKKDGSAFNNQFYLVPLFDAGGQLAYFLGIQVEVETLDDEQQPPKNLGWLHTMCL 166
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A6U0JAP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JAP0_9STRA) HSP 1 Score: 191 bits (485), Expect = 8.940e-54 Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 1 Query: 88 ILQASI-GMGGAQSSESTGTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
+L+A + +GG+ + FV K LS +D +VDM+N + V S+C+ DPD ED PI+F SDGF FTGYA E+EGRNCRFLQG T+ D+ KIR A+K KE + LLNYKKDG++F+N+FFL+PL++E G LAY++G+Q VK GQ P NPGW+Y GLHA
Sbjct: 45 VLEAILDAIGGSDLPAPSQRQFVAKKELSERDATIVDMLNSAGHEDV-SFCLCDPDQEDCPIVFASDGFCNFTGYAVSEIEGRNCRFLQGPGTEKADVDKIRSAIKSEKEESVNLLNYKKDGTSFNNEFFLSPLYEEDGKLAYYIGVQCSVKKLGPGQAPANPGWVYAQGLHA 216
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A835ZDN1_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN1_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.540e-51 Identity = 86/153 (56.21%), Postives = 110/153 (71.90%), Query Frame = 1 Query: 148 FVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEA-GTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
F P+K L KD ILVDM+N D + + VTDPDLEDNPI+F S+GF+ +TGYAK E+EGRNCRFLQG +T+P D+ IR A+ +A +CLLNY+KDG+ F NQFF+ PL D A G +AY+LG+Q V+ GQ +N GW+Y MGLHA
Sbjct: 26 FEPSKELKPKDMILVDMLNSRDEPDIC-WVVTDPDLEDNPIVFSSEGFSRYTGYAKSEIEGRNCRFLQGKETNPADVETIRAAIGAQTDANVCLLNYRKDGTAFLNQFFICPLHDAATGAVAYYLGVQAAVRQKEGGQTQKNAGWVYQMGLHA 177
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A7S4J4U8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J4U8_9STRA) HSP 1 Score: 182 bits (461), Expect = 9.060e-51 Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 1 Query: 121 QSSESTGTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
Q +S+ F P K L +D ++DM+N + V +CV DPDL+D PIIF SDGF +FTGY+ EE+EG+NCRFLQG +T D+ +IR+A+K+ KE C+ LLNY+KDGS+F N+FF++PL D+ LAYF+G+Q V GQ P N GW+Y+ G HA
Sbjct: 21 QEYQSSARQFEPEKRLCERDYTIIDMLNSKGHESVC-FCVCDPDLKDMPIIFSSDGFCDFTGYSHEEIEGKNCRFLQGTETSTEDVDRIRKAIKEQKEECVNLLNYRKDGSSFINEFFISPLLDDNEKLAYFIGVQCSVPKKGPGQMPSNAGWVYSQGNHA 180
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A126WWA7_9STRA (Putative LOV domain-containing protein n=1 Tax=Synura petersenii TaxID=52555 RepID=A0A126WWA7_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.220e-50 Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 1 Query: 148 FVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLH 600
F+ K L KD I+VDM+ G + ++ V Y VTDPDL+DNPI+F S+GF ++TGY K E+EGRNCRFLQGA TDP DI+ IR+A+++ + +C+ NY K+G F NQFF+ PL DE LAYFLG+QV V + GQ+ ENPGWIYTMG H
Sbjct: 50 FISQKKLCPKDQIVVDML-GMNENKNVCYLVTDPDLDDNPIVFTSEGFCKYTGYEKNEIEGRNCRFLQGAGTDPKDISLIRDAIRKEIDVNVCIQNYCKNGKPFMNQFFMCPLRDENKKLAYFLGVQVVVPKKAPGQQQENPGWIYTMGNH 199
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Match: A0A1E7EP39_9STRA (PAS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP39_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.190e-47 Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 148 FVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFLGIQVQVKTASDGQEPENPGWIYTMGLHA 603
F+P K LS +D ++DM+N + VS+C+ DPD +D PIIF SDGF FTGY +E+EGRNCRFLQG T DI IR+AVK+ EA + LLNY+KDG++F NQFFL PL TL YF+G+Q V+ GQ P N GWIY+ GLHA
Sbjct: 35 FIPEKPLSERDMTIMDMINSVGH-EAVSFCICDPDQKDCPIIFASDGFCNFTGYDCQEIEGRNCRFLQGPDTKKEDIDTIRQAVKEETEASVNLLNYRKDGTSFANQFFLAPLRGSDSTLLYFIGVQCSVEKLGPGQAPSNVGWIYSQGLHA 185 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.890.1 >prot_Ecto-sp6_S_contig103.890.1 ID=prot_Ecto-sp6_S_contig103.890.1|Name=mRNA_Ecto-sp6_S_contig103.890.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=166bp MGGAQSSESTGTPFVPTKILSVKDTILVDMMNGPDNSRVVSYCVTDPDLEback to top mRNA from alignment at Ecto-sp6_S_contig103:116746..124102- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.890.1 ID=mRNA_Ecto-sp6_S_contig103.890.1|Name=mRNA_Ecto-sp6_S_contig103.890.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7357bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:116746..124102- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:116746..124102- >mRNA_Ecto-sp6_S_contig103.890.1 ID=mRNA_Ecto-sp6_S_contig103.890.1|Name=mRNA_Ecto-sp6_S_contig103.890.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:116746..124102- (Ectocarpus species6 EcLAC_371)back to top |