mRNA_Ecto-sp6_S_contig103.889.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Match: D7FXV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV7_ECTSI) HSP 1 Score: 478 bits (1231), Expect = 1.560e-170 Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 1 Query: 1 MARAVVAAVVEYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLCDS 726
MARAV+AAV EYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLC+S
Sbjct: 1 MARAVLAAVAEYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLCNS 242
BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Match: A0A6H5KYM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM0_9PHAE) HSP 1 Score: 353 bits (907), Expect = 2.350e-121 Identity = 178/198 (89.90%), Postives = 185/198 (93.43%), Query Frame = 1 Query: 49 IGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNAN 642
+ ANE+AVFVTAGN TSSSSFDLATYN LSDTPNPGGDGVLSATM TSNSAAISISAS+ GA NLSYRLYWS+LSTWTGAE EWEV SGCVIPTGGLSLLENP+CLFSSACGMYRASEGM DWVTLPNDT EYSFEAPVSRGAQYIFNVAM DSN++TSAYRASNMTFTFTN QQCVADQGCQSQVKIPSGPTFNAN
Sbjct: 39 VRANEHAVFVTAGNLTSSSSFDLATYNALSDTPNPGGDGVLSATMPTSNSAAISISASDTSGARNLSYRLYWSDLSTWTGAEYEWEVTSGCVIPTGGLSLLENPSCLFSSACGMYRASEGMFDWVTLPNDTGEYSFEAPVSRGAQYIFNVAMWDSNDVTSAYRASNMTFTFTNSQQCVADQGCQSQVKIPSGPTFNAN 236
BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Match: D8LAS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS5_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 2.060e-17 Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 1 Query: 232 GASNLSYRLYWSNL-STWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPS 621
GA ++ Y LYWS L T GA C + + SL ENPNCLF SACG+ A++G +DWV L +T M DS NITS Y +N++FT T+YQ CVAD C SQ+ S
Sbjct: 19 GADDVMYSLYWSRLPETDEGA---------CTLASDNTSLRENPNCLFWSACGIGNAADGHTDWVALEANTXXXXXXXXXXXXXXXXX-XXMVDSRNITSVYSGTNVSFTSTDYQDCVADPDCTSQLNEDS 139 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.889.1 >prot_Ecto-sp6_S_contig103.889.1 ID=prot_Ecto-sp6_S_contig103.889.1|Name=mRNA_Ecto-sp6_S_contig103.889.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp MARAVVAAVVEYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNback to top mRNA from alignment at Ecto-sp6_S_contig103:109779..112962- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.889.1 ID=mRNA_Ecto-sp6_S_contig103.889.1|Name=mRNA_Ecto-sp6_S_contig103.889.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3184bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:109779..112962- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:109779..112962- >mRNA_Ecto-sp6_S_contig103.889.1 ID=mRNA_Ecto-sp6_S_contig103.889.1|Name=mRNA_Ecto-sp6_S_contig103.889.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:109779..112962- (Ectocarpus species6 EcLAC_371)back to top |