mRNA_Ecto-sp6_S_contig103.887.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7G0T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T1_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.140e-39 Identity = 88/186 (47.31%), Postives = 105/186 (56.45%), Query Frame = 1 Query: 1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVSASKQQHVAIPVSSSKEPSFHKPDPAXXXXXXXXXXXXXXXXXXAGDAVPXXXXXXXXXXXXXXXXXXXXXXXXXKRRLCS 558
M LTL++HPG LT++APTVS+A TE A+ R LVLGSIDFQVT+WLE PLDGTVV+ST SESH + LDE +VWVGDQ ++ ++ + +TA SV VS S +HVA P S KEPSFHK DPA A DAVP KRRLCS
Sbjct: 1 MALTLIMHPGAHLTVRAPTVSVAWTEERAM-RDHPVLLVLGSIDFQVTSWLEHPLDGTVVTSTYSESHASTKFSLDEHNIVWVGDQAS-VVSDHSIAFTARSVVVS-SADKHVADPAVSFKEPSFHKSDPAPTSTAADPNAGDGDKNVPAHDAVPTSTVTSSVRSPSESTSSDRAKADGKKRRLCS 183
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI) HSP 1 Score: 145 bits (366), Expect = 7.480e-38 Identity = 85/131 (64.89%), Postives = 95/131 (72.52%), Query Frame = 1 Query: 1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVSASKQQHVAIPVSSSKEPSFHKPDPA 393
MGLTL+VHP RLTIQAPTVSLARTEA + ++LGSIDFQVTTWLEQP DGT+ LDERGVVWVGDQGV L N++VTYTATSV VSASK +VA PV+SS+E SFHK DPA
Sbjct: 82 MGLTLIVHPAARLTIQAPTVSLARTEAM---QDDPVLVLLGSIDFQVTTWLEQPFDGTM---------------LDERGVVWVGDQGVVLADNSKVTYTATSVVVSASK--NVADPVASSEEASFHKSDPA 192
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC7_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 6.260e-8 Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
MG+ L VHPG +LTI+APTV + R E ++ R V GSI F+VT WL + LDGT+ +D+ GVV QG L N + YTA SV V+
Sbjct: 83 MGVALKVHPGAKLTIRAPTVMMKRRE---MDNQPILR-VFGSIQFEVTRWLPEHLDGTL---------------MDKHGVVAFEGQGS-LESRNTIRYTAASVVVA 168
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.090e-7 Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 4 GLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS--ASKQQHVAIPVSSS 360
G+ L+VHPG LTI+APT+++ + ++ ++P VLGS+DFQVT+W+++ L+G V D+ G++ V +G+ + + + +TA SV V+ A+ + A P +S
Sbjct: 83 GIALLVHPGAELTIRAPTINMKKGKSMQDQQPILR--VLGSVDFQVTSWVKEHLEGAPV---------------DDHGIISVEGEGM-VRSDKAILFTARSVIVADPAAANKKEADPAETS 185
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: A0A6H5LGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE1_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7 Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 2 Query: 422 MVMATRTSKLVMRSPPPRSRPLLIRHLRALRRIARKLNEK-KGGY 553
MVMATRTS+L++ P PRSRPL IRHLR+LRRIA KLNEK KGGY
Sbjct: 1 MVMATRTSRLMIPFPLPRSRPLFIRHLRSLRRIAPKLNEKQKGGY 45
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: A0A6H5KKU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU9_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.500e-7 Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1 Query: 1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS---ASKQQHVAIPVSS 357
MG+ L VH G +LTI+APTV + R E ++ R V G++ F VT WL + LDGT+ +DE GVV QG L N + YTATSV V+ A+ Q+ + SS
Sbjct: 4 MGIALKVHAGAKLTIRAPTVVMKRRE---MDNQPILR-VFGNVQFDVTRWLPEHLDGTL---------------MDEHGVVAFEGQGS-LESRNTIRYTATSVVVADPAAADQKEADLTASS 105
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D8LNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB6_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 2.090e-7 Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = 1 Query: 1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
MG+ L VHPG +LTI APTV + R E ++ R GSI F+VT WL + LDGT+ +D+ GVV QG L N + YTATSV V+
Sbjct: 96 MGVALKVHPGAKLTICAPTVMMKRRE---MDNQPILR-AFGSIHFEVTRWLPEHLDGTL---------------MDKHGVVAFEGQGS-LESRNTIRYTATSVVVA 181
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 1.870e-5 Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 1 MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWLEQPLDGTVVSSTQSESHKFSASCLDERGVVWVGDQGVFLLGNNEVTYTATSVFVS 318
MG+ LVVH G R+TI+APTV + +TE + R V GS++F+VT W+ + L+GT+ D G+V QG+ + + YT+++V V+
Sbjct: 106 MGVGLVVHSGARVTIRAPTVLMQKTETMRGQPVLR---VQGSVEFEVTNWVPEHLEGTLA---------------DNHGIVSCEGQGL-VRSKMAILYTSSAVIVA 192 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.887.1 >prot_Ecto-sp6_S_contig103.887.1 ID=prot_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=187bp MGLTLVVHPGVRLTIQAPTVSLARTEASALERPTRARLVLGSIDFQVTTWback to top mRNA from alignment at Ecto-sp6_S_contig103:101347..103479+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.887.1 ID=mRNA_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2133bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:101347..103479+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:101347..103479+ >mRNA_Ecto-sp6_S_contig103.887.1 ID=mRNA_Ecto-sp6_S_contig103.887.1|Name=mRNA_Ecto-sp6_S_contig103.887.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:101347..103479+ (Ectocarpus species6 EcLAC_371)back to top |