mRNA_Ecto-sp6_S_contig103.885.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.885.1
Unique NamemRNA_Ecto-sp6_S_contig103.885.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:82330..85816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size412
Hectar predicted targeting categorymitochondrion
Exons2
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.5729694-UTR-Ecto-sp6_S_contig103:82329..824291682348739.5729694-UTR-Ecto-sp6_S_contig103:82329..82429Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 82330..82429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.5808942-CDS-Ecto-sp6_S_contig103:82429..825681682348739.5808942-CDS-Ecto-sp6_S_contig103:82429..82568Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 82430..82568 -
1682348739.5884633-CDS-Ecto-sp6_S_contig103:85643..858161682348739.5884633-CDS-Ecto-sp6_S_contig103:85643..85816Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 85644..85816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.885.1prot_Ecto-sp6_S_contig103.885.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 82430..85816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.885.1

>prot_Ecto-sp6_S_contig103.885.1 ID=prot_Ecto-sp6_S_contig103.885.1|Name=mRNA_Ecto-sp6_S_contig103.885.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=104bp
AQTRVRGSARLQIQHLLCVRKIPKRLRPSFKARILHDGGCTNRFREILAE
NVPKSVKYNGYQQVGVLFPRVVHTTASGYSSNDRLDDIQSKPKMIMDPTA
IPW*
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mRNA from alignment at Ecto-sp6_S_contig103:82330..85816-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.885.1 ID=mRNA_Ecto-sp6_S_contig103.885.1|Name=mRNA_Ecto-sp6_S_contig103.885.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3487bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:82330..85816- (Ectocarpus species6 EcLAC_371)
GCCCAGACGCGCGTGCGAGGCAGTGCACGCCTTCAAATACAGCACTTACT
TTGTGTACGCAAGATACCAAAACGACTCAGACCAAGTTTCAAAGCCCGCA
TCCTCCACGACGGAGGATGTACAAATCGTTTTCGGGAAATTCTTGCCGAG
AATGTTCCAAAGAGCGTCAAATAGTATCATGTTATATATTCAAGGGCTCC
GGACTTCGGGCGCAGAGGCGCCCTCGTCCTCATAGTAGGCTTAAAAAGGG
AAGGTGTGAAGGCTGTGCACAGCATACCAAGGGCATGAAGCCGCAGGGTG
ACCGAATGAACGGTGTGAAGATGTTCGCGTTGTATTCGAGAAATGTGCCG
TTCCCGGTGTAACATGATGAAGTCAGAAGAGTCGCGTGTACGTGATTTTT
TGTCTAGCTTCGCCCCGTGCGGACGAAAAGGAGATGTAAGCTACGGTCGC
CTCCCTATTCTTGCGCCGGTAAGAACGTAGTAACACTCAGGCAACGTTCT
CTAAGTGGCTTTGCTGTGGCCAATATCCTCCCCAAAGGGGCCAAAGAAAG
AACGAACACTGCAAATGTTCGACGGTATTCCGGTTGTTGATGTTGCTGGT
GTCACGCCGCCTAACTCTCATATTCACACTTCTTCAGTGTCGCGCCTTTC
TCTAATATCCCCCTTTAATGTTCTGGAGCTACATATGTAGTACGTACGAA
ACCTCCGTGCGGTGACAATACACGATGCACATACTCCAGTTCGCGTTGCT
TCCGCTAGAGAAGAAGGCGACAGGATGCATGCTTGCACTACTGTACCTAC
CTACAACGCATACCATATAGTACGGACAGTCTGTCGATATCTATCTACAG
TTGAGACCACGCGGCAGAAAAAAGTCTGTGCTAGGTACTGCTTGTTGCTT
GTACTTCAAGTATGTGTCATGATTTATGAGTTGACGTTCTCCGAAATCTC
ATCCAATGAGCTGCGTGATTCTTTAGAGATCACAGTCCCTTGATGTCCCT
TGCGTAGACGCGCCCGGATGCACGATATTTAGCCGTACTTTACGGTGCTG
TAACTCGGCTCGCCCTTGGAGTCTAGAGCTCGCGACAGGGGCGCTGTGGT
CTCGAGTGGCACGCCCACGTCGGCGAAGACGGCCGAAAAAATTGTTTGAA
CCCCATATAAAAACAATTAAAACCGATTTACCGCACCGCAACGTCTAGCT
CAATGACTGAAATAGTGGTTGCGTGCATTCACCGTGCTGTAACTCTACTC
GCCTTTGGAGTTTCGAGCTCGCGACAGGGGCGATGCGATCCAGAGACTGG
CCCGCTGCAGCGGGCAACAACCGGCGAAAAAAAAAGTATCAAGGCGACCG
CGAACTGATGCACCGCAAAAAAACGTCTTTCTTTTAGAGTGCAACAATGG
TTGAACTCTTGCGTCTCAGGCCTCTGACGTAATTGTAGTTAAGTCTATAC
TTACAGGATGGTCGTCGTGACGTGACACATTTCTTGTTATTAGTATGGAA
AAAAATAAATTAAAAATGGCTGTGATAAATTGTTTCGTACAGCGGTATGG
ACCAGACGCCGACTGTACATAGAAGTTGGCGAGTGTCGACTGAGTTGTGT
TGTGACGGCATCTTCCACGCACTTCTGCCAGCGCTGCTTTGTTGTTTGGA
GTCTTGTAGGTCGAGATACAGCAGTGGGATTCTCGGGTTGTGGAGGCAAA
AGTGAACCAGAGCAAAAAAATTCATGCATAGCTCGATTACTGCTGCTGTG
TTTTTGCTACAGCAGTATGGACTAGACGCCGAACGACGTCCGCGTGCTAC
AAGTACCGCAACGACCTAACGGGATGGGATACTTCCTGCCACGGCGAACC
ATAGTACAATGCGATGCAAACATCCGTTCGTGTGTCGCGCGGCTGCCACA
TGTGTCGACGATAGGTACACGTAGAGCTCTCGCCATGTTGTTGTCGTTAC
CGCGCAGGAGAATCCCTCGGAGATGTTCCACATGGTGTACAACGACAGCA
GTACTACTGTACATAGATGTCGTAGGAGAGTGGAGTTGTGCTGTCACGGC
ATTTCCCACGCACTCTCCTACCGGTGCTTGTGTCGATTGGAGTCTTGTAG
GCCGAAATACAAGAGTGGGTTGGACTCCCGGGTTGTGGAAGCAAACCTGC
CTGCAACAACAGAGAAGGCGGTGTTCTATTTACTATAATAGACTAGAGTA
TCTCAACTTTTTTTTTTTTCGCGGCATGTGGTCGCATATTTCTTTGCCAC
TGCCGAAAAAGACCGCTGGATCTTTACGCAGAGTCCACCTTTTGCATTTA
TCATTTTACACTGAACGACGCAGGACGGGTCGACCTTCATCGTTGTTGTT
GTTGCTGTTGTCTCCACATTAAAACCGTTCCGACGTCCTCCTCGATACTT
GTGGACTACCTGTCTGTTGGAAATTGTGGGAATCCCTTCATTCTGAGAGA
GAGAGCCATAGGTCGGCATCCGGCCTTCTTTTTTTTTTTTTCTTAATATG
ACACAATGAAACCATCTCAATCATAGAAAAGAGTCTGAGACAGATTAGCA
ATGGATTCATAGCGTCAGAAAGTACCTGTATGTCTACGATTTCCCAGACA
TTCATTGTGGAGTTTTGACGTTGCGCTTGCCATCGTCGCCGCGAAGGTAA
GTGTTTGTGTCTTCAAACCTTCTCAGCCGGCCTTCAAACTTCTTGTTGAT
AAGTCTCCGTATGGTAACTTCTCCGCGCATGAGTCATATGCAGCTATGAC
CTGCGCTTTGACTCTCACGATGGGTGTTCTACCTCCCCTTCTTGCGTTGG
TGTGTACCTGCGATATACAGAAGGATCGCTCCACGACGCAAACGTCGACG
TCTCCGTTTTTTTTTTGTTCCCTTCGCACTCCATCCTTGCGGCGGTTTTC
ACACACCGACTTCGAACGTGGGGTGCAATTTCCTCTCTTCGTACCTTCCT
CGTCGGCCTTCTCCGTCGTTGTGTACATAATGTACCTCGATTTTTCGGCT
TTTCGATTCCGATAGACAAGACTACGGACTGACATGTTCCTTCCACCCCC
GACGGGACCGCGCGCTCGTCGAGTGCCGAAATTCTTCATCACTTCCTTGC
CTCTCCCAACACCGTCCCTTCTTCCCGCCCTTACAAATCCTCTCCCCTTC
TTCTTCTTCTTTCCTTCCTCCCGGACACTCACCACCATCCGTCCTGGATG
TTGGCCCACAGCCCCATTGGGGGGCGGGGGGCCAATCCTTAACCCTAGTA
ACGGATATCAGCAAGTGGGTGTGTTGTTCCCAAGAGTAGTCCACACAACA
GCGAGCGGTTATTCTTCGAATGATCGACTTGATGATATTCAATCCAAACC
CAAAATGATCATGGATCCAACAGCAATTCCTTGGTGACATAATGAAGTCT
GCAGCATTAGTACGGTCAACACAACAGCGATCATCACCTAGGTCGAAATT
GCCTTGGTGGCCTGTTTCACGAACGACGCTACTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:82330..85816-

>mRNA_Ecto-sp6_S_contig103.885.1 ID=mRNA_Ecto-sp6_S_contig103.885.1|Name=mRNA_Ecto-sp6_S_contig103.885.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:82330..85816- (Ectocarpus species6 EcLAC_371)
GCCCAGACGCGCGTGCGAGGCAGTGCACGCCTTCAAATACAGCACTTACT
TTGTGTACGCAAGATACCAAAACGACTCAGACCAAGTTTCAAAGCCCGCA
TCCTCCACGACGGAGGATGTACAAATCGTTTTCGGGAAATTCTTGCCGAG
AATGTTCCAAAGAGCGTCAAATATAACGGATATCAGCAAGTGGGTGTGTT
GTTCCCAAGAGTAGTCCACACAACAGCGAGCGGTTATTCTTCGAATGATC
GACTTGATGATATTCAATCCAAACCCAAAATGATCATGGATCCAACAGCA
ATTCCTTGGTGA
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