mRNA_Ecto-sp6_S_contig103.882.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.882.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE) HSP 1 Score: 170 bits (431), Expect = 2.120e-45 Identity = 95/181 (52.49%), Postives = 118/181 (65.19%), Query Frame = 1 Query: 1 MVILNEKRTTLNLAVCRETNNRYLNKNMEKLQDLIYSADRVVFADADQHVDGAVDSCYPVVFKDEVIHPINHTAGGQELHVKWADDVVFVRKLQQDLRDGRKIEVCCGSAQELRTLEKVALAIVGKEEVGIYYANSPNQAEIIGVYAHWSK*KLIGVTCKIAVSV---GSKDGVHFPVEER 534
M+I++E R+TLN A LIY ADRV+ ADAD +VDGAV Y VFK+E IH I+H GGQELHV++ D FV+ + +DLR G++I VCCGSA EL+T+EK+AL IV KE++GIYYANSP QAEI V AHW K KLIG+T I VSV G D V+ +R
Sbjct: 468 MIIMDELRSTLNSA-------------------LIYQADRVICADADLYVDGAVQCFYDTVFKNEEIHHIDHKGGGQELHVRFTDSAAFVKMILKDLRAGKRIGVCCGSALELKTIEKLALDIVHKEKLGIYYANSPQQAEIADVSAHWPKYKLIGLTSTITVSVDYTGPIDRVYISPSQR 629
BLAST of mRNA_Ecto-sp6_S_contig103.882.1 vs. uniprot
Match: A0A6H5J8T6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8T6_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 4.470e-12 Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 Query: 244 KWADDVVFVRKLQQDLRDGRKIEVCCGSAQELRTLEKVALAIVGKEEVGIYYANSPN 414
++ D RK+QQ+ ++I +C GSAQEL+TLEK+ALAIVG+E+VGIYY NSPN
Sbjct: 3 RFKHDAAIARKIQQE---NKQIGMCRGSAQELKTLEKLALAIVGEEKVGIYYGNSPN 56 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.882.1 >prot_Ecto-sp6_S_contig103.882.1 ID=prot_Ecto-sp6_S_contig103.882.1|Name=mRNA_Ecto-sp6_S_contig103.882.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=152bp MVILNEKRTTLNLAVCRETNNRYLNKNMEKLQDLIYSADRVVFADADQHVback to top mRNA from alignment at Ecto-sp6_S_contig103:35798..36406+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.882.1 ID=mRNA_Ecto-sp6_S_contig103.882.1|Name=mRNA_Ecto-sp6_S_contig103.882.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:35798..36406+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:35798..36406+ >mRNA_Ecto-sp6_S_contig103.882.1 ID=mRNA_Ecto-sp6_S_contig103.882.1|Name=mRNA_Ecto-sp6_S_contig103.882.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:35798..36406+ (Ectocarpus species6 EcLAC_371)back to top |