mRNA_Ecto-sp6_S_contig103.878.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI) HSP 1 Score: 461 bits (1187), Expect = 1.520e-147 Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 1 Query: 1 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG 732 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY+DPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG Sbjct: 1420 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYSDPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG 1663
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 169 bits (428), Expect = 2.310e-44 Identity = 99/221 (44.80%), Postives = 143/221 (64.71%), Query Frame = 1 Query: 97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY------ADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWV--GKSLR 720 F A+F A APLLF+R+L L+Q+D T GPMTQ+IW M+ H+ RFS F+ +VM+SFALAFH+++ ++P C+ D+ L +++ T +SLL +F S LG FD F+ A + C P AGI+++ +Y + ++++LNLLIAVLST HD V NA EFHLAR++ + SA SV R PPPLNL+ +++DVF EI ++ +SLR Sbjct: 1014 FYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEHSEPQCTLDDDDAFPLRDAFGTFGDSLLTVFSSALGGPEFDLFDDAGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTEIWRFILWARSLR 1234
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 166 bits (421), Expect = 2.080e-43 Identity = 106/240 (44.17%), Postives = 145/240 (60.42%), Query Frame = 1 Query: 4 LAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCT---GPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKS 714 LAFIFR++ I +F A G FF+A+F LAA APLLFAR+L L+Q+D+T GPM QIIW ML RF VF++VVM FALAF++++ +C G +L ESY + + L +F++ LG+ F+ F+ D C P DAG LL Y+V+ A++MLNLLIAVLST H V N EFHLAR++ I SA +V R+PPP NL+ + ++D E+ W + Sbjct: 1121 LAFIFRLLG-IREFGGPADP-------GDYFFVAQFFLAASAPLLFARLLRLSQIDSTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFG--SCDAGSDLDESYGSFGTAFLTVFKAPLGEFKFEDFD-DVGGQCPYNPSPGRASDAGTFLLVAYLVVLAVVMLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRG 1349
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 163 bits (412), Expect = 2.970e-42 Identity = 96/224 (42.86%), Postives = 141/224 (62.95%), Query Frame = 1 Query: 97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSL------YADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWV--GKSLRFLS 729 F A+F A APLLF+R+L L+Q+D T GPMTQ+IW M+ H+ RFS F+ +VM+SFALAFH++ Y++P C+ D+ L +++ T +S + +F S LG D F+ + C P AGI+++ +Y + ++++LNLLIAVLST HD V NA EFHLAR++ + SA SV R PPPLNL+ +++D+F EI ++ +SLR S Sbjct: 382 FYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDPFPLRDAFGTFGDSFVTVFSSALGGPEIDLFDDVGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTEIWRFILWARSLRSRS 605
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 154 bits (388), Expect = 5.540e-39 Identity = 99/241 (41.08%), Postives = 141/241 (58.51%), Query Frame = 1 Query: 1 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY------ADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFEA-DRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGE 690 ++ F+FR+IA DF F A+F AA APLLF+R+L L+Q+D T GPMTQ+IW M+ RFS F+ VVM+SFALAFH+++ DP C+ D+ L +++ T S + +F + LG +F+ +EA C P +AGI L+ +Y+V+ A+++LNLLIAVLST H V +N EFHLAR++ I SA V R PPPLNL+ + ++D E Sbjct: 1196 LVTFVFRMIALDDDFFL---------------FHAQFFYAASAPLLFSRLLVLSQIDATLGPMTQVIWRMISDTLRFSAFISVVMLSFALAFHAVFHTCGEFEDPTCNTNDDPDFPLRDAFGTFGRSFVTVFSAALGGPDFELYEAAGSECRCKLPDGAQEAGIFLMVVYMVIMAVVLLNLLIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTE 1421
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 150 bits (380), Expect = 6.410e-38 Identity = 93/220 (42.27%), Postives = 133/220 (60.45%), Query Frame = 1 Query: 97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSL------YADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICH---WVGKS 714 F A+F A APLLF+R+L L+Q+D T GPMTQ+IW M+ H RFS F+ +VM+SFALAFH++ Y++P C+ D+ L +++ T +S + +F LG +F+ F+ A + C P +AGI LL +Y++ +++LNLLIAVLST H V NA EFH AR++ I SA V R PPPLNL+ I++D E+ WV + Sbjct: 1148 FHAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDAFPLRDAFGTFGDSFVTVFTYALGGPDFEAFQLAGSDCRCDLPEGARNAGIFLLVVYMITMTVVLLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDAGTEVWRVGVWVTRG 1367
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.710e-31 Identity = 86/200 (43.00%), Postives = 115/200 (57.50%), Query Frame = 1 Query: 97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY------ADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVD 678 F ARF A AP LF+R+L L+Q+D T GPMTQ+IW M+ H RFS F+ +VM+SFALAFH+++ +P C+ D+ R + D F ++ D + E RN AGI LL +Y+V +++L LLIAVLST H V +NA EFH AR+ FI SA V R PPPLNL+ I++D Sbjct: 485 FHARFFYALSAPRLFSRLLVLSQIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEHIEPQCTFDDDDAFPIRDAFGTFGDSFVTVFTDCRCNLPEGARN-----------AGIFLLVVYMVTMTVVLLKLLIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLD 673
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.600e-29 Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 1 Query: 4 LAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCT---GPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVH 537 LAF+FR++ I +F G T G FF+A+F LA APLLFAR+L L+Q+DNT GPM QIIW ML RF VF++VVM FALAF++++ +C G L ESY + +LL +F++ LG+ F+ F+ D C P DAG LL Y+++ A++MLNLLIAVLST H Sbjct: 1119 LAFVFRLLG-IREFG-------GPTDPGDYFFVAQFFLAVSAPLLFARLLRLSQIDNTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFG--SCDAGSGLDESYGSFGTALLTVFKAPLGEFKFEDFD-DVGGQCPYNPSPGRASDAGTFLLVAYLIVLAVVMLNLLIAVLSTAH 1288
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI) HSP 1 Score: 122 bits (306), Expect = 2.840e-28 Identity = 73/176 (41.48%), Postives = 106/176 (60.23%), Query Frame = 1 Query: 187 MTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCT---GPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWV 705 M QIIW M+ RF VF++VVM FALAF +++ +C+ L ES+ + + L +F + LG+ +F+ F D C P DAG LL Y+V+ A++MLNLL+AVL+T H V+ N EFHLAR++ I SA +V R+PPPLNL+ + +++D GE+ WV Sbjct: 1 MIQIIWRMMSQTLRFGVFIVVVMAGFALAFTTVFG--SCNADSLLGESFGSFGTAFLSVFEAPLGEFSFEDFH-DVGTQCPDNPAPGRASDAGTFLLVAYLVVLAVVMLNLLVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWV 173
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 5.050e-19 Identity = 65/186 (34.95%), Postives = 107/186 (57.53%), Query Frame = 1 Query: 127 APLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGIT-LLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDV 681 APL+F+R+L AQ+ GPM Q++++M L +F V ++VVM+ FA++FH+L+ D + G + L +F++MLG+ +F + P ++D+ T L IY+V+ A+++LNLLIAVLST H V A EF +++++ I+ V+ LPPP NL+ + + V V Sbjct: 906 APLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGG------------TCLTLFKAMLGEVDFFG---------SFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMV 1070 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.878.1 >prot_Ecto-sp6_S_contig103.878.1 ID=prot_Ecto-sp6_S_contig103.878.1|Name=mRNA_Ecto-sp6_S_contig103.878.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=244bp MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVback to top mRNA from alignment at Ecto-sp6_S_contig103:12307..16430+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig103.878.1 ID=mRNA_Ecto-sp6_S_contig103.878.1|Name=mRNA_Ecto-sp6_S_contig103.878.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4124bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:12307..16430+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:12307..16430+ >mRNA_Ecto-sp6_S_contig103.878.1 ID=mRNA_Ecto-sp6_S_contig103.878.1|Name=mRNA_Ecto-sp6_S_contig103.878.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:12307..16430+ (Ectocarpus species6 EcLAC_371)back to top |