mRNA_Ecto-sp6_S_contig102.877.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A6H5KUS4_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE) HSP 1 Score: 375 bits (963), Expect = 4.020e-128 Identity = 175/188 (93.09%), Postives = 182/188 (96.81%), Query Frame = 1 Query: 4 SRIESEYSFGSKPFGHYKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLE 567
S IESEYS GS+PFGHYK TP VPIEN+KGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYD YPKARHHLLLMPRPSFLDV+RPSDLRREHLSALRQMHALGRAVAE LSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSER+RMPRHWNIFTT+IFLEPAW+EEMLERHGCLQLD+E
Sbjct: 3 SGIESEYSIGSQPFGHYKETPPVPIENIKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVIRPSDLRREHLSALRQMHALGRAVAEGLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERMRMPRHWNIFTTDIFLEPAWIEEMLERHGCLQLDME 190
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: D7G953_ECTSI (Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G953_ECTSI) HSP 1 Score: 342 bits (877), Expect = 2.710e-115 Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 1 Query: 1 MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT 495
MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFR+GRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYD YPKARHHLLLMPRPSFLDVMRPSDLRREHLSAL QMHALGRAVAE LSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT
Sbjct: 1 MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFRIGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALHQMHALGRAVAEDLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT 165
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: D8LEA7_ECTSI (FHA-HIT protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI) HSP 1 Score: 200 bits (508), Expect = 7.360e-56 Identity = 105/206 (50.97%), Postives = 135/206 (65.53%), Query Frame = 1 Query: 52 YKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHPA-LQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRR-EHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTP-RCHICHETIGGVERLKAHYL 660
Y+ TP P++ G WK V + K+ P LQ ++YF D + +V+YD YPK+R+HLLL+P+P FLDV + S+LRR EHLS+LRQ+HA AVAE LSQQG G IR G H +PS+EPLH+HIISQDFDSERL +HWN FTT+ FL+ +WVE L G L LD E ++ E TP RC CH + + +LK H L
Sbjct: 268 YRRTPPTPVK-------GAGHWKAVLFQYLKDEPMPVELQREVYFSDNQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKER--LKALEATPLRCFRCHSPMTNMTKLKEHLL 464
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A6H5KT50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT50_9PHAE) HSP 1 Score: 181 bits (460), Expect = 2.820e-49 Identity = 97/131 (74.05%), Postives = 104/131 (79.39%), Query Frame = 1 Query: 562 LESRYIRLREQTPRCHICHETIGGVERLKAHYLSHEAIARVYGPSRQRNARQVGRRSIPEPPRHEQRHLERVDPRSQQGSWRRGHSAPQTRVRGAQYQGTRSNEFPQGKPVSYLGARPSRSIQGRASAVWN 954
+ +RYIRL+EQTPRCHIC ETIGGVERLKAHYLSHE IARVYGPSRQRNA QV RSIPE P HEQRHL R DPRSQQGSWRRGH APQTRV GAQYQ TR+NEFPQG + RP + QG S+ N
Sbjct: 1 MPNRYIRLKEQTPRCHICQETIGGVERLKAHYLSHETIARVYGPSRQRNASQVDHRSIPESPLHEQRHLGRADPRSQQGSWRRGHCAPQTRVEGAQYQSTRNNEFPQGPGRAN---RPRWAGQGGCSSTRN 128
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A6H5K612_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE) HSP 1 Score: 166 bits (420), Expect = 3.830e-43 Identity = 83/153 (54.25%), Postives = 108/153 (70.59%), Query Frame = 1 Query: 52 YKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHP-ALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRR-EHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIF 504
Y+ TP VP++ G WK V + K+ P LQ +++F +++ +V+YD YPK+R+HLLL+P+P FLDV + S+LRR EHLS+LRQ+HA AVAE LSQQG G IR G H +PS+EPLH+HIISQDFDSERL +HWN FTT F
Sbjct: 257 YRQTPPVPVK-------GAGHWKAVLFQYLKDRPMPDELQREVFFSNDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATAAAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTGTF 402
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: D7G951_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI) HSP 1 Score: 150 bits (379), Expect = 5.330e-39 Identity = 80/190 (42.11%), Postives = 110/190 (57.89%), Query Frame = 1 Query: 118 KEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQG---------IGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHIC--HETIGGVERLKAH 654
K LF + +Q ++++ DE MV YD +PK + HLL++PR +FL+V PS LR+EHL LR++HA+G A+A+ LS Q IR G HA+PS EPLH+H++S D D L+ HWN FTT++FLE +WVE LE G L LD+ + + L RC C +E LKAH
Sbjct: 73 KTALFLFLMYHTNEQIQGEVFYMDEDVMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKEHLPKLRRLHAMGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRN-FRELEHVKLRCFRCPGEPEFRHMESLKAH 261
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A0G4IM90_PLABS (HIT domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IM90_PLABS) HSP 1 Score: 135 bits (339), Expect = 4.620e-34 Identity = 74/185 (40.00%), Postives = 107/185 (57.84%), Query Frame = 1 Query: 115 WKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGE--IRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLS 663
WK V N ++ D+ + IYD YPKAR HLL++PR + + S LRREHL +R M G+ AE LS G+ ++G HAVPS++ LHMH+IS D DSE L+ +HWN FTTE FL P +V +E HG +Q+D +RY + ++ CH C +++ + LK+H ++
Sbjct: 24 WKGVLSALVNNA--ARFPFVVFADDDDTVTIYDRYPKARVHLLVLPRANISSI---SVLRREHLGLVRAMINSGKRAAELLSNAGMFPEGYKMGFHAVPSLDRLHMHLISCDMDSEALKNKKHWNSFTTEFFLPPEFVVSQIEEHGSVQID-RNRYEEVLKRPLACHKCRQSLKTIPALKSHIVN 202
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A1Y2ANP7_9FUNG (HIT-like protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ANP7_9FUNG) HSP 1 Score: 135 bits (340), Expect = 3.650e-33 Identity = 71/197 (36.04%), Postives = 117/197 (59.39%), Query Frame = 1 Query: 79 ENVKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQ-GIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLSH 666
+N K + W + L+ ++ +H +D IY ++FMVIYD YPKA++HLL++P+ + L + HL ++ M L + V L+++ G E +IG HA+PSM +HMH+IS+DF S L+ +HWN FT+E FL+P+++ E L +GC++LD + Y + +Q +C C + + + LKAH +H
Sbjct: 114 DNSKEKASVKTSWSDGLLLYIRHPEH--FKDSIYKIYDKFMVIYDKYPKAKYHLLIIPKEEIKSIY---YLNKSHLPLIKDMIELSKEVINDLNKKNGEIEFQIGFHAIPSMNQVHMHVISRDFISPFLKTKKHWNTFTSEFFLKPSFIIEQLNNNGCIKLDRQY-YENILKQPLKCCKCGQDLKNMPTLKAHLTTH 304
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A210QY14_MIZYE (Aprataxin n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QY14_MIZYE) HSP 1 Score: 128 bits (322), Expect = 1.230e-31 Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1 Query: 145 NCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLSH 666
+ D P LQ+ + DE+ ++I D YPKA+HH L+MP+ + ++ + L+ EHL L +H G V H + + + + R+G HAVPSM LH+H+ISQDFDS L+ +HWN FTTE F + + +ML+ G +QLD S++ + ++ RCH+C + + LK H H
Sbjct: 37 SMDDPELQEYV---DEKVVIIKDKYPKAKHHFLVMPKENIPNL---NSLKPEHLELLEYLHEKGEEVI-HRTDETL-KFRLGYHAVPSMSHLHLHVISQDFDSPCLKNKKHWNSFTTEYFFDSEDIMKMLKEKGKVQLD-SSKFQDVLKRNLRCHVCRKDFSTMPALKTHIKVH 201
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: UPI00087828AC (aprataxin isoform X1 n=4 Tax=Scleropages formosus TaxID=113540 RepID=UPI00087828AC) HSP 1 Score: 132 bits (331), Expect = 3.180e-31 Identity = 73/172 (42.44%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 160 ALQD---QIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLSH 666
++QD Q+Y +D+ +VI D YPKARHH L++P S + LR EH S LR MH + + E R+G HA+PSM +H+H+ISQDFDS L+ +HWN FTTE FLE V EMLE+ G Q+ ++ L + RCH+CH+ + + +LK H SH
Sbjct: 211 SMQDPKMQVY-KDDMVVVIKDKYPKARHHWLVLPWESIASL---KALRAEHCSLLRHMHHVAERMVEQCPDASKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTEYFLESQAVIEMLEKDG--QVTVKDGASELLKFPLRCHVCHKELSTIPQLKEHLRSH 376 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.877.1 >prot_Ecto-sp6_S_contig102.877.1 ID=prot_Ecto-sp6_S_contig102.877.1|Name=mRNA_Ecto-sp6_S_contig102.877.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=393bp MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCback to top mRNA from alignment at Ecto-sp6_S_contig102:632744..637600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.877.1 ID=mRNA_Ecto-sp6_S_contig102.877.1|Name=mRNA_Ecto-sp6_S_contig102.877.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4857bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:632744..637600- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:632744..637600- >mRNA_Ecto-sp6_S_contig102.877.1 ID=mRNA_Ecto-sp6_S_contig102.877.1|Name=mRNA_Ecto-sp6_S_contig102.877.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:632744..637600- (Ectocarpus species6 EcLAC_371)back to top |