mRNA_Ecto-sp6_S_contig102.873.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: D7G976_ECTSI (Fibronectin type III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G976_ECTSI) HSP 1 Score: 482 bits (1240), Expect = 3.480e-171 Identity = 252/266 (94.74%), Postives = 258/266 (96.99%), Query Frame = 1 Query: 1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWSFMKAEGSAQNPDAQRVRASCVEYEEMEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKRGGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKDLGDLPEVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFSTAKGGEQ 798 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELW+FM+AEGSAQ+PDAQRVRASCVE+E EIG+VELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATA+TFEAFCEDENIERVTRVASVLEAYPRNKR GRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN GDAATLKD GDLPEVEVVKEIPEGYEG DEGSAMIELAYDIASGATFKFSTA GGEQ Sbjct: 1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMQAEGSAQSPDAQRVRASCVEHE--EIGVVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAMTFEAFCEDENIERVTRVASVLEAYPRNKRSGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDSGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQ 264
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A6H5KTN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN7_9PHAE) HSP 1 Score: 337 bits (865), Expect = 4.450e-115 Identity = 172/191 (90.05%), Postives = 182/191 (95.29%), Query Frame = 1 Query: 112 LRAEWDADDEPCQKKLSFELWSFMKAEGSAQNPDAQRVRASCVEYEEMEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKRGGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKDLGDLPEVEVVK 684 +RA+WDADDEPCQKKLSFELW+FMKAEGSA NPDAQRVRASCVE+E EIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVA V+EAYP NK GG+TRRHLQS+TS+AGQAHQVAELIDGLKNLGCTRTTGED+KLCVLSDSFN LG AATLKD GDLPEVEV+K Sbjct: 15 IRADWDADDEPCQKKLSFELWTFMKAEGSAHNPDAQRVRASCVEHE--EIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVAPVVEAYPFNKHGGQTRRHLQSSTSQAGQAHQVAELIDGLKNLGCTRTTGEDKKLCVLSDSFNYLGKAATLKDSGDLPEVEVIK 203
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: UPI00196B5695 (Ig-like domain-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI00196B5695) HSP 1 Score: 64.3 bits (155), Expect = 6.230e-8 Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 1 Query: 577 TGEDQKLCVLSDSFN*LGDAATLKDLGDLPE-VEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFST 780 TG + V+SDSFN LG AT GDLP V +VKEIP G+ GTDEG M + Y IA GAT F++ Sbjct: 185 TGAGVSVGVMSDSFNYLGGYATDISTGDLPSGVNIVKEIPSGFTGTDEGRGMAQNVYKIAPGATLSFAS 253
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: UPI00168A40D6 (S8 family serine peptidase n=1 Tax=Spirosoma validum TaxID=2771355 RepID=UPI00168A40D6) HSP 1 Score: 61.6 bits (148), Expect = 3.730e-7 Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 484 RHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKDLGDLP-EVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFST 780 +++ TTS+ +A Q +++ + N+ +G K+ V+SDS+N L AA GDLP V+VV++IP Y G+DEG AM E+ +D+A GA F+T Sbjct: 152 KNVGKTTSQGDRA-QKSDVARQMYNV-----SGAGSKVGVISDSYNSLRGAADGVASGDLPPNVQVVRDIPARYTGSDEGRAMAEIVHDVAPGANIAFNT 245
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A1I1N3X0_9BACT (Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Spirosoma endophyticum TaxID=662367 RepID=A0A1I1N3X0_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 4.260e-6 Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 577 TGEDQKLCVLSDSFN*LGDAATLKDLGDLP-EVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFSTAKGGE 795 TG K+ VLSDS+N LG A GDLP V+V++EI + G+DEG AM E+ +D+A GA F++A G+ Sbjct: 177 TGAGNKVGVLSDSYNALGGAPDGVASGDLPPNVQVLEEIDDLTNGSDEGRAMAEIVHDVAPGADIAFNSAFNGQ 250
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A845YP49_9CYAN (S8 family serine peptidase n=1 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YP49_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 9.920e-6 Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 577 TGEDQKLCVLSDSFN*LGDAATLKDLGDLPEVEVVKEIPEGYEGTDEGSAMIELAYDIASGATFKFSTAKGGE 795 TG + VLSDSF+ LG A + GDLP+V V+ ++P G G+DEG AM++L DIA GA F TA G+ Sbjct: 121 TGAGVTVGVLSDSFDNLGGATADRLSGDLPDVNVLLDLPGG--GSDEGRAMLQLIADIAPGADLAFHTAFLGQ 191
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Match: A0A2T2S5Q7_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium QH_10_64_37 TaxID=1919091 RepID=A0A2T2S5Q7_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 1.410e-5 Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 1 Query: 496 STTSEAGQAH--QVAELIDGLKNLGCTRTTGEDQKLCVLSDSFN*LGDAATLKD---LGDLP----------EVEVVKEIPEGYEGTD-----EGSAMIELAYDIASGATFKFSTAKGG 792 S SEA AH A L G T+G QK+CVLSDS+N A + + GDLP V+V+ E Y+GTD EG AM++L +DIA GAT F TA GG Sbjct: 191 SVESEADSAHAADTARLNTG--------TSGNGQKVCVLSDSYNTASVATSASEDVQSGDLPGNGNPAGRTTPVDVL----EDYDGTDPSPTDEGRAMLQLIHDIAPGATLGFHTAFGG 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.873.1 >prot_Ecto-sp6_S_contig102.873.1 ID=prot_Ecto-sp6_S_contig102.873.1|Name=mRNA_Ecto-sp6_S_contig102.873.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=208bp MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQback to top mRNA from alignment at Ecto-sp6_S_contig102:551155..554703+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.873.1 ID=mRNA_Ecto-sp6_S_contig102.873.1|Name=mRNA_Ecto-sp6_S_contig102.873.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3549bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:551155..554703+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:551155..554703+ >mRNA_Ecto-sp6_S_contig102.873.1 ID=mRNA_Ecto-sp6_S_contig102.873.1|Name=mRNA_Ecto-sp6_S_contig102.873.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:551155..554703+ (Ectocarpus species6 EcLAC_371)back to top |