mRNA_Ecto-sp6_S_contig102.860.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: D7G976_ECTSI (Fibronectin type III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G976_ECTSI) HSP 1 Score: 491 bits (1264), Expect = 7.060e-175 Identity = 252/264 (95.45%), Postives = 258/264 (97.73%), Query Frame = 1 Query: 1 MSLLGALFLALTSGAVIGRASGQSVESSACEFSTFLSLRAEWDADDESCQKKLSFELWTFMKAEGSAQNPDAQRVRASCLEHEETGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKRGGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYTGVDEGSAMIELAYDIASGATFKFSTAYGGEQ 792
M LLGALFLALTSGAVIGRASG+SVESSACEFSTFLSLRAEWDADDE CQKKLSFELWTFM+AEGSAQ+PDAQRVRASC+EHEE G+VELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATA+TFEAFCEDENIERVTRVASVLEAYPRNKR GRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKD GDLPEVEVVKEIPEGY GVDEGSAMIELAYDIASGATFKFSTAYGGEQ
Sbjct: 1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMQAEGSAQSPDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAMTFEAFCEDENIERVTRVASVLEAYPRNKRSGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDSGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQ 264
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A6H5KTN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN7_9PHAE) HSP 1 Score: 344 bits (882), Expect = 1.060e-117 Identity = 171/189 (90.48%), Postives = 180/189 (95.24%), Query Frame = 1 Query: 112 LRAEWDADDESCQKKLSFELWTFMKAEGSAQNPDAQRVRASCLEHEETGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKRGGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVK 678
+RA+WDADDE CQKKLSFELWTFMKAEGSA NPDAQRVRASC+EHEE GLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVA V+EAYP NK GG+TRRHLQS+TS+AGQAHQVAELIDGLKNLGCTRTTGED+KLCVLSDSFNY G AATLKD GDLPEVEV+K
Sbjct: 15 IRADWDADDEPCQKKLSFELWTFMKAEGSAHNPDAQRVRASCVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVAPVVEAYPFNKHGGQTRRHLQSSTSQAGQAHQVAELIDGLKNLGCTRTTGEDKKLCVLSDSFNYLGKAATLKDSGDLPEVEVIK 203
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: UPI00196B5695 (Ig-like domain-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI00196B5695) HSP 1 Score: 71.6 bits (174), Expect = 2.150e-10 Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 571 TGEDQKLCVLSDSFNYFGDAATLKDLGDLPE-VEVVKEIPEGYTGVDEGSAMIELAYDIASGATFKFSTAY 780
TG + V+SDSFNY G AT GDLP V +VKEIP G+TG DEG M + Y IA GAT F++ Y
Sbjct: 185 TGAGVSVGVMSDSFNYLGGYATDISTGDLPSGVNIVKEIPSGFTGTDEGRGMAQNVYKIAPGATLSFASGY 255
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A7K3NRW6_9DELT (S8 family serine peptidase n=1 Tax=Desulfovibrio sulfodismutans TaxID=63561 RepID=A0A7K3NRW6_9DELT) HSP 1 Score: 59.3 bits (142), Expect = 2.130e-6 Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1 Query: 487 QSTTSEAGQAHQVAEL-IDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYTGVDEGSAMIELAYDIASGATFKFSTAYGG 786
+STT+E AH + DG TG K+ V+SDS +Y A L+ GDLP V + G TG EG+AM+E+ YD+A A+ F+TA GG
Sbjct: 182 KSTTTEGDVAHSAPTVRTDGY--------TGAGVKIGVISDSVDYL---ANLQATGDLPATVTVLQDSPGQTG--EGTAMLEIVYDLAPSASLYFATAQGG 269
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A845YP49_9CYAN (S8 family serine peptidase n=1 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YP49_9CYAN) HSP 1 Score: 59.3 bits (142), Expect = 2.220e-6 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 571 TGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYTGVDEGSAMIELAYDIASGATFKFSTAYGGE 789
TG + VLSDSF+ G A + GDLP+V V+ ++P G G DEG AM++L DIA GA F TA+ G+
Sbjct: 121 TGAGVTVGVLSDSFDNLGGATADRLSGDLPDVNVLLDLPGG--GSDEGRAMLQLIADIAPGADLAFHTAFLGQ 191
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A0G4ES30_VITBC (Subtilisin n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ES30_VITBC) HSP 1 Score: 58.9 bits (141), Expect = 3.090e-6 Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 595 VLSDSFNYFGDAATLKDLGDLPE-VEVVKEIPEGYTGVDEGSAMIELAYDIASGAT-FKFSTAYGGE 789
LSDS++ G+AA L++LGDLPE V V+KE EG + DEG M+EL YD+A G F F TA+ G+
Sbjct: 304 ALSDSYDVRGNAAILRELGDLPEDVAVLKEGVEGMS--DEGQGMMELMYDVAPGLPKFAFHTAFWGQ 368
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A2T2S5Q7_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium QH_10_64_37 TaxID=1919091 RepID=A0A2T2S5Q7_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 4.240e-6 Identity = 45/115 (39.13%), Postives = 56/115 (48.70%), Query Frame = 1 Query: 490 STTSEAGQAH--QVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKD---LGDLPEV------EVVKEIPEGYTGVD-----EGSAMIELAYDIASGATFKFSTAYGG 786
S SEA AH A L G T+G QK+CVLSDS+N A + + GDLP ++ E Y G D EG AM++L +DIA GAT F TA+GG
Sbjct: 191 SVESEADSAHAADTARLNTG--------TSGNGQKVCVLSDSYNTASVATSASEDVQSGDLPGNGNPAGRTTPVDVLEDYDGTDPSPTDEGRAMLQLIHDIAPGATLGFHTAFGG 297
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: UPI0019DA8FD1 (S8 family serine peptidase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019DA8FD1) HSP 1 Score: 55.5 bits (132), Expect = 4.230e-5 Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1 Query: 571 TGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYTGV-------DEGSAMIELAYDIASGATFKFSTAYGGE 789
TG Q + VLSDSF++ GDA + GDLP + + + DEG AM++LA+D+A GA+ F TA+ GE
Sbjct: 169 TGLGQTIGVLSDSFDHLGDAGADQTNGDLPASVISLDDSANCGSILVQASCRDEGRAMMQLAHDVAPGASMAFHTAFTGE 248
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A0B1U412_9DELT (Peptidase_S8 domain-containing protein n=3 Tax=unclassified Desulfovibrio TaxID=2593640 RepID=A0A0B1U412_9DELT) HSP 1 Score: 55.1 bits (131), Expect = 5.190e-5 Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 487 QSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYTGVDEGSAMIELAYDIASGATFKFSTAYGG 786
+STT+E AH A ++ + G T G K+ V+SDS +Y A L+ GDLP V + G +G EG+AM+E+ YD+A A F+TA+GG
Sbjct: 124 KSTTTEGDVAHS-APIV---RTAGYT---GAGIKIGVISDSVDYL---AQLQATGDLPATVTVLQDASGNSG--EGTAMLEIVYDLAPSAPLYFATAWGG 211
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Match: A0A853IPL6_9BURK (Uncharacterized protein n=1 Tax=Ottowia beijingensis TaxID=1207057 RepID=A0A853IPL6_9BURK) HSP 1 Score: 54.3 bits (129), Expect = 6.480e-5 Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1 Query: 571 TGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYTGVDEGSAMIELAYDIASGATFKFSTAYGG 786
TG K+CVLSD N A + GDLP V +P DEG+AM+E+ YD+A GA+ F+T +GG
Sbjct: 15 TGAGAKVCVLSDGVNTL---AARQGTGDLPAGVTV--VPGQAGSGDEGTAMLEIVYDMAPGASLYFATGFGG 81 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.860.1 >prot_Ecto-sp6_S_contig102.860.1 ID=prot_Ecto-sp6_S_contig102.860.1|Name=mRNA_Ecto-sp6_S_contig102.860.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=264bp MSLLGALFLALTSGAVIGRASGQSVESSACEFSTFLSLRAEWDADDESCQback to top mRNA from alignment at Ecto-sp6_S_contig102:406750..410321- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.860.1 ID=mRNA_Ecto-sp6_S_contig102.860.1|Name=mRNA_Ecto-sp6_S_contig102.860.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3572bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:406750..410321- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:406750..410321- >mRNA_Ecto-sp6_S_contig102.860.1 ID=mRNA_Ecto-sp6_S_contig102.860.1|Name=mRNA_Ecto-sp6_S_contig102.860.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:406750..410321- (Ectocarpus species6 EcLAC_371)back to top |