mRNA_Ecto-sp6_S_contig102.854.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig102.854.1
Unique Name	mRNA_Ecto-sp6_S_contig102.854.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: D7G976_ECTSI (Fibronectin type III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G976_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 2.020e-174
Identity = 255/264 (96.59%), Postives = 260/264 (98.48%), Query Frame = 1

Query:    1 MSLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMKAEGSAQNPDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETDNASSYQGATATTFEAFCEDENIERVTRVASVLEAYPRNKQGGQTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQ 792
            M LLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFM+AEGSAQ+PDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETD+ASSYQGATA TFEAFCEDENIERVTRVASVLEAYPRNK+ G+TRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKD GDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQ
Sbjct:    1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMQAEGSAQSPDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAMTFEAFCEDENIERVTRVASVLEAYPRNKRSGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDSGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQ 264

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: A0A6H5KTN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN7_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 1.760e-116
Identity = 172/189 (91.01%), Postives = 181/189 (95.77%), Query Frame = 1

Query:  112 LRAEWDADDEPCQKKLSFELWTFMKAEGSAQNPDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETDNASSYQGATATTFEAFCEDENIERVTRVASVLEAYPRNKQGGQTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVK 678
            +RA+WDADDEPCQKKLSFELWTFMKAEGSA NPDAQRVRASCVEHEEIG+VELITPKGYTMSDSVSAAPGSVVSETD+ASSYQGATA TFEAFCEDENIERVTRVA V+EAYP NK GGQTRRHLQS+TS+AGQAHQVAELIDGLKNLGCTRTTGED+KLCVLSDSFNY G AATLKD GDLPEVEV+K
Sbjct:   15 IRADWDADDEPCQKKLSFELWTFMKAEGSAHNPDAQRVRASCVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVAPVVEAYPFNKHGGQTRRHLQSSTSQAGQAHQVAELIDGLKNLGCTRTTGEDKKLCVLSDSFNYLGKAATLKDSGDLPEVEVIK 203

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: UPI00196B5695 (Ig-like domain-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI00196B5695)

HSP 1 Score: 67.8 bits (164), Expect = 4.200e-9
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1

Query:  571 TGEDQKLCVLSDSFNYFGDAATLKDLGDLPE-VEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAY 780
            TG    + V+SDSFNY G  AT    GDLP  V +VKEIP G+ G DEG  M +  Y IA GAT  F++ Y
Sbjct:  185 TGAGVSVGVMSDSFNYLGGYATDISTGDLPSGVNIVKEIPSGFTGTDEGRGMAQNVYKIAPGATLSFASGY 255

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: A0A845YP49_9CYAN (S8 family serine peptidase n=1 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YP49_9CYAN)

HSP 1 Score: 58.2 bits (139), Expect = 5.370e-6
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1

Query:  571 TGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGE 789
            TG    + VLSDSF+  G A   +  GDLP+V V+ ++P G  G DEG AM++L  DIA GA   F TA+ G+
Sbjct:  121 TGAGVTVGVLSDSFDNLGGATADRLSGDLPDVNVLLDLPGG--GSDEGRAMLQLIADIAPGADLAFHTAFLGQ 191

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: A0A0G4ES30_VITBC (Subtilisin n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ES30_VITBC)

HSP 1 Score: 57.4 bits (137), Expect = 9.990e-6
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1

Query:  595 VLSDSFNYFGDAATLKDLGDLPE-VEVVKEIPEGYEGV-DEGSAMIELAYDIASGAT-FKFSTAYGGE 789
             LSDS++  G+AA L++LGDLPE V V+KE   G EG+ DEG  M+EL YD+A G   F F TA+ G+
Sbjct:  304 ALSDSYDVRGNAAILRELGDLPEDVAVLKE---GVEGMSDEGQGMMELMYDVAPGLPKFAFHTAFWGQ 368

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: A0A2T2S5Q7_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium QH_10_64_37 TaxID=1919091 RepID=A0A2T2S5Q7_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-5
Identity = 47/119 (39.50%), Postives = 59/119 (49.58%), Query Frame = 1

Query:  490 STTSEAGQAH--QVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKD---LGDLP----------EVEVVKEIPEGYEGVD-----EGSAMIELAYDIASGATFKFSTAYGG 786
            S  SEA  AH    A L  G        T+G  QK+CVLSDS+N    A +  +    GDLP           V+V+    E Y+G D     EG AM++L +DIA GAT  F TA+GG
Sbjct:  191 SVESEADSAHAADTARLNTG--------TSGNGQKVCVLSDSYNTASVATSASEDVQSGDLPGNGNPAGRTTPVDVL----EDYDGTDPSPTDEGRAMLQLIHDIAPGATLGFHTAFGG 297

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BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Match: A0A7K3NRW6_9DELT (S8 family serine peptidase n=1 Tax=Desulfovibrio sulfodismutans TaxID=63561 RepID=A0A7K3NRW6_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 9.650e-5
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1

Query:  490 STTSEAGQAHQVAEL-IDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGG 786
            STT+E   AH    +  DG         TG   K+ V+SDS +Y    A L+  GDLP    V +   G  G  EG+AM+E+ YD+A  A+  F+TA GG
Sbjct:  183 STTTEGDVAHSAPTVRTDGY--------TGAGVKIGVISDSVDYL---ANLQATGDLPATVTVLQDSPGQTG--EGTAMLEIVYDLAPSASLYFATAQGG 269

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig102.854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G976_ECTSI	2.020e-174	96.59	Fibronectin type III domain-containing protein n=1...	[more]
A0A6H5KTN7_9PHAE	1.760e-116	91.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
UPI00196B5695	4.200e-9	50.70	Ig-like domain-containing protein n=1 Tax=Aquispha...	[more]
A0A845YP49_9CYAN	5.370e-6	46.58	S8 family serine peptidase n=1 Tax=Symploca sp. SI...	[more]
A0A0G4ES30_VITBC	9.990e-6	52.94	Subtilisin n=1 Tax=Vitrella brassicaformis (strain...	[more]
A0A2T2S5Q7_9BACT	1.020e-5	39.50	Uncharacterized protein n=1 Tax=Bacteroidetes bact...	[more]
A0A7K3NRW6_9DELT	9.650e-5	39.00	S8 family serine peptidase n=1 Tax=Desulfovibrio s...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig102:293023..296647-
coding sequence from alignment at Ecto-sp6_S_contig102:293023..296647-

protein sequence of mRNA_Ecto-sp6_S_contig102.854.1

>prot_Ecto-sp6_S_contig102.854.1 ID=prot_Ecto-sp6_S_contig102.854.1|Name=mRNA_Ecto-sp6_S_contig102.854.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=264bp
MSLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQ
KKLSFELWTFMKAEGSAQNPDAQRVRASCVEHEEIGVVELITPKGYTMSD
SVSAAPGSVVSETDNASSYQGATATTFEAFCEDENIERVTRVASVLEAYP
RNKQGGQTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVL
SDSFNYFGDAATLKDLGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIAS
GATFKFSTAYGGEQ

mRNA from alignment at Ecto-sp6_S_contig102:293023..296647-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig102.854.1 ID=mRNA_Ecto-sp6_S_contig102.854.1|Name=mRNA_Ecto-sp6_S_contig102.854.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3625bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:293023..296647- (Ectocarpus species6 EcLAC_371)
ATGTCTCTCCTGGGGGCACTCTTTTTGGCACTCACCAGCGGTGCAGTGAT
CGGACGCGCTTCCGGCGAAAGTGTCGAAAGCTCGGCGTGCGAGTTTTCAA
CGTTCCTTTCGCTCAGGTGCGGCGTTGCATGTGCACGGCGTGTCGTTGTT
TTTTTTGTTTTTTTTCATCGAAGAAGACCGCTGTAGGATTCCGTCGGGAT
CGTGTGCTTCGGGAATGTTTGCCTTCACTGCTGCAAACAAGCACCCAATC
GCGGGCTGATATCGAGCAGGACCACTTCTAAAGAACCACAGCGTTCTACT
CGCGTGGAGCAAGAACATTATTGCAAACAAACGTGAAGCGTGTGCGACTC
CTACCTATGATAAACCCTTTCGCTTTCATTGCGGCCGGAACATGTTTCCG
GTGTCTTTGCTTGTGGGCATTTTCCTTAAAGTTCAACGTGGCTGCTGTGT
CCATGGGAGGTCTTCTCAGCACTTGGTCATTTGACGGTGTCGAACGAAAT
AAACAGCCCAATGAACTACGGTGCATCCTCGACGCACCCCTGGAGTTCAT
GAGATGTAGACATCGAAAACGTAGTGTTGTGTTAACTTGCGGGGATCGAC
GTTCGAGAGTTCTAATGCACAGTGCCAAAACACATGTCGTATGATATCGT
TCGTTCATCAGAGCGGAGTGGGATGCGGACGACGAGCCGTGCCAGAAAAA
GCTATCCTTCGAGCTATGGACTTTCATGAAGGCCGAGGGATCAGCCCAGA
ACCCTGACGCTCAGCGCGTTCGAGCCAGCTGCGTCGAGCATGAAGAAATT
GGAGTGGTAGAACTCATCACTCCCAAGGTGCACGATTGGTTCTATGTGGT
GATGTTAGATTTGACGTACCGACACAACCATTCCTCATAGGGTGTTCGTC
TAAGCCGAACGCAAACGTTGTTGTAAGTGGTACACACAACGCTGGAGGCA
TCACAGCGACGCTACCTTTTCCATCTTGTCGGGAATGAACGGTACATACT
CTTCATCCAAGATGGGCAATTTCATTTGTTGAAAACCTACCTTCTCTGCC
TCTTCATCGCCTTTGAGTGCAGGGATACACCATGTCTGACAGCGTGAGCG
CGGCCCCAGGAAGCGTGGTCAGCGAGACCGACAATGCCTCTTCGTACCAG
GGCGCCACCGCCACGACGTTCGAAGGTGGCCATGAAACGATTGCCTCCCG
CTAGGTAGTCAGTGATAATATATAAATCGTCAAGAACGTTTTGGCGTTAC
GCATGCAATACTCCCTCCGTAGATCCTGTACTCATAGCTGCCCATCACCA
ATCAAAAGGCTGATGACGTGCACTGCTGCATCGATTGGTACCGTTCGCAC
GAATTTCAACACGTAGCGTTCTGCGAGGACGAGAACATTGAGCGAGTTAC
TCGGGTTGCCTCTGTTCTGGAGGCGTACCCGCGCAACAAACAGGGTGGCC
AAACGCGGCGCCACCTTCAAAGCACCACCAGCGAGGCAGGACAAGCGCAT
CAAGTAAGACGACCTCGACTATTGTTGCATTTGGTGGCATCGTGCAGATC
AAAAGGTTGGGGCAAGACCACCATGTTTGTCCTTTGGATTGAAGACTTGG
CGACATGAAATTCGACATATTTAACGGATTCCCGACAGTAAATCAACTAC
TTCCCTGCCTTGAAAACGGTTGGCAAAGCAAGTGGGACCCGTTTTAACCG
ACTTCTCAGAAAACCAAACACGCCACGTTTAGAATTGGACCCGTCGCACC
GCCAAATGAATGTTTGCCGAATAATGCAGATGTTGAGTTTCGTACGGGTG
CAACCTGATATGTCAACCACAGGTAGCCGAGCTCATCGACGGGCTGAAGA
ACCTCGGGTGTACGAGAACAACGGGGGAAGATCAAAAACTCTGTGTTTTG
TCAGACAGCTTCAACTACTTTGGCGATGCCGCAACCCTGAAGGATTTGGG
AGACCTGCCCGAAGTCGAGGTCGTCAAGGTACGACACAATACAAGTGGAT
GTCGACCCACAAGGACCCGGATCGTTTGATCCTGAAACCTATTGAGTTAC
TGTAGTTTCTTTTGAACAGTGATGTCGCACATTACTCGCAGGGTTTGCAG
GTTCTTCTCGTTCTCCGAAACGCCGGACAAAGTTGTTGACAACACGAACT
ACGGGCAACGACAGACATACAACCCAAGTCTCGTGTTGGGTAACAATTTT
CTGATGACCATACAGAGAGGCTGTTATCAGCAGGTATCATTCCATATATT
GTGTTTCACAAGCGATCGATATTGGGTTGCATAAGATATCGAAATTCCAC
GCAGGGAGAATCAGTAAATTGCATCTCACGCCAAACATCCGTGGGTGAGT
TCTGTTAGCGATAAAACATTCACAGATTTCTACGGAGACTCACAAACGGA
TTGCGAATGGTGGACACTTCAAATACCGGACAGTCTGACGTCAGTACGGC
ACCAATATCCGTGGAAACAGGCAAACCGGAAATTCTATACTCTCCCGTTG
GACACCACACGTCAAAAACACGAAATAGAGCCGTCGAACCGCTCTCTAGC
CATTGTTTGTGACGAGACACGAAGACGCAAACCCTATTTTTGGCAAGTCT
GCCACAGTTCTTGGTGTTGATCCCCGGCCCCAAGGCAAGCCACACGCAAT
TTGCTCCAGGTGAAATTGCGATCTGCGTGTACCTAAAATCTTACAAACGC
GATCGACCAAGACCCAAGCGCAGCGCCGACACGCAAGCTCGATATGCCCT
TATAACCCATTCCCTTGATGTTCGCTGATGTTGGTGACTAAAAAACAAAT
ACGCGTATTCTGTCATTTTCCAGGAAATCCCCGAAGGTTATGAGGGCGTT
GACGAAGGTGTGTGCGGTCTCTATCTTTGGTATGTTGACGCATGTTTGCA
CGTGCGTTCTACGTCCCATCGATTCTTGATGCCATTCTGCACGCTGTGTC
CGATTTAGGAACGCCAACCCCTTCGTCATTGGGTTACTCACTTTACCTGT
ACCACCATCCCATGAACCTATTAGCAGCACGGTTCAGCTCAGGTCCCACT
CTCCAGCTGAATCTCCATGTGCGCGTGTTGTAACCCACGAAAGATCGAAA
CGATTGCTGCACCTGCGCCTTAAGTATGAACCACAAGCAAGCACAAAGGA
GGAAAGGGTGAAAAAAATAGTACGAGTAGATAGATATCTCGGTAGACGTG
TAATTTTTTGTTTCATCGTACCTGCCGTTTCTGTTTTCAATCTGGAGAAT
GAGGGTACGCCGCCCCCTCACGGTGCCCAGGGTCACGGCCTTGAAAATAC
TTCGCCGTTTTTACCCAAACTGAGACGACGTAGTTCCGATGATTAACTGG
TGGTCGATGCAAAGAAAAACAATTACGCGCGTACACCTGTGGTCTAGTGC
GGTATTTTGGACTGAGAAACTCTTTCTCTATCCTCTGGACATGCTTCATC
TTGTCTTCATGCACGCAAGTTTCATTTTTACACTCTGCACTAGCGTCAAG
AGTTGGCGTTCTGATACGCATCCACCGCGCGTGTTTGGTATCTAGGATCT
GCCATGATAGAGCTCGCGTACGATATCGCGTCTGGAGCAACGTTCAAGTT
CAGCACGGCCTATGGTGGCGAGCAG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:293023..296647-

>mRNA_Ecto-sp6_S_contig102.854.1 ID=mRNA_Ecto-sp6_S_contig102.854.1|Name=mRNA_Ecto-sp6_S_contig102.854.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:293023..296647- (Ectocarpus species6 EcLAC_371)
ATGTCTCTCCTGGGGGCACTCTTTTTGGCACTCACCAGCGGTGCAGTGAT
CGGACGCGCTTCCGGCGAAAGTGTCGAAAGCTCGGCGTGCGAGTTTTCAA
CGTTCCTTTCGCTCAGAGCGGAGTGGGATGCGGACGACGAGCCGTGCCAG
AAAAAGCTATCCTTCGAGCTATGGACTTTCATGAAGGCCGAGGGATCAGC
CCAGAACCCTGACGCTCAGCGCGTTCGAGCCAGCTGCGTCGAGCATGAAG
AAATTGGAGTGGTAGAACTCATCACTCCCAAGGGATACACCATGTCTGAC
AGCGTGAGCGCGGCCCCAGGAAGCGTGGTCAGCGAGACCGACAATGCCTC
TTCGTACCAGGGCGCCACCGCCACGACGTTCGAAGCGTTCTGCGAGGACG
AGAACATTGAGCGAGTTACTCGGGTTGCCTCTGTTCTGGAGGCGTACCCG
CGCAACAAACAGGGTGGCCAAACGCGGCGCCACCTTCAAAGCACCACCAG
CGAGGCAGGACAAGCGCATCAAGTAGCCGAGCTCATCGACGGGCTGAAGA
ACCTCGGGTGTACGAGAACAACGGGGGAAGATCAAAAACTCTGTGTTTTG
TCAGACAGCTTCAACTACTTTGGCGATGCCGCAACCCTGAAGGATTTGGG
AGACCTGCCCGAAGTCGAGGTCGTCAAGGAAATCCCCGAAGGTTATGAGG
GCGTTGACGAAGGATCTGCCATGATAGAGCTCGCGTACGATATCGCGTCT
GGAGCAACGTTCAAGTTCAGCACGGCCTATGGTGGCGAGCAG